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registration in starfish, Part 2: expose image translation #409
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I think I have a version of this implemented. It looks something like below. Does this serve your needs? If so I can update the registration module to look like this, and potentially incorporate #408 to zero out values as well.
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as implemented above, compute_shifts takes as input an index to an image in the input stack to use as the 'reference' image. But this can be easily generalized to compute a max projection, or accept a reference image. |
yeah, this is great. maybe without the crop per #408 discussion. |
If the registration interface is getting reworked to define a reference image #373, and will continue to be used, we should expose the shift method as functionality within the registration module. This would be used so we can (for example) move around images that arrive with non-zero shifts in the metadata, unless this is already handled in
slicedimage
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