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global_cycle.sh
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global_cycle.sh
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#!/bin/ksh
################################################################################
#### UNIX Script Documentation Block
# . .
# Script name: global_cycle.sh
# Script description: Makes a global spectral model surface analysis
#
# Author: Mark Iredell Org: NP23 Date: 2005-02-03
#
# Abstract: This script makes a global spectral model surface analysis.
#
# Script history log:
# 2005-02-03 Iredell extracted from global_analysis.sh
# 2014-11-30 xuli add NST_ANL
# 2017-08-19 Gayno updates for FV3GFS.
#
# Usage: global_cycle.sh
#
# Imported Shell Variables:
# CASE Model resolution. Defaults to C768.
# JCAP Spectral truncation of the global fixed climatology files
# (such as albedo), which are on the old GFS gaussian grid.
# Computed from CASE by default.
# LATB i-dimension of the global climatology files. NOT the
# i-dimension of the model grid. Computed from CASE by default.
# LONB j-dimension of the global climatology files. NOT the
# j-dimension of the model grid. Computed from CASE by default.
# BASEDIR Root directory where all scripts and fixed files reside.
# Default is /nwprod2.
# HOMEglobal Directory for global_shared. Default is
# $BASEDIR/global_shared.v15.0.0.
# FIXSUBDA Sub-directory where fixed climatology files reside.
# Defaults to fix/fix_am.
# FIXgsm Directory for the global fixed climatology files.
# Defaults to $HOMEglobal/fix/fix_am
# FIXfv3 Directory for the model grid and orography netcdf
# files. Defaults to $HOMEglobal/fix/fix_fv3/${CASE}
# EXECgsm Directory of the program executable. Defaults to
# $HOMEglobal/exec
# DATA Working directory
# (if nonexistent will be made, used and deleted)
# Defaults to current working directory
# COMIN Directory containing the input analysis data
# (such as sea ice). Defaults to current
# working directory.
# COMOUT Output directory
# (if nonexistent will be made)
# defaults to current working directory
# XC Suffix to add to executables. Defaults to none.
# PREINP Prefix to add to input analysis files.
# Defaults to none.
# SUFINP Suffix to add to input analysis files.
# Defaults to none.
# CYCLEXEC Program executable.
# Defaults to ${EXECgsm}/global_cycle$XC
# FNGLAC Input glacier climatology GRIB file.
# Defaults to ${FIXgsm}/global_glacier.2x2.grb
# FNMXIC Input maximum sea ice climatology GRIB file.
# Defaults to ${FIXgsm}/global_maxice.2x2.grb
# FNTSFC Input SST climatology GRIB file.
# Defaults to ${FIXgsm}/RTGSST.1982.2012.monthly.clim.grb
# FNSNOC Input snow climatology GRIB file.
# Defaults to ${FIXgsm}/global_snoclim.1.875.grb
# FNZORC Input roughness climatology.
# Defaults to igbp vegetation type-based lookup table
# FNVETC must be set to igbp file:
# ${FIXgsm}/global_vegtype.igbp.t$JCAP_CASE.$LONB_CASE.$LATB_CASE.rg.grb
# FNALBC Input 4-component albedo climatology GRIB file.
# defaults to ${FIXgsm}/global_snowfree_albedo.bosu.t$JCAP_CASE.$LONB_CASE.$LATB_CASE.rg.grb
# FNALBC2 Input 'facsf' and 'facwf' albedo climatology GRIB file.
# Defaults to ${FIXgsm}/global_albedo4.1x1.grb
# FNAISC Input sea ice climatology GRIB file.
# Defaults to ${FIXgsm}/CFSR.SEAICE.1982.2012.monthly.clim.grb
# FNTG3C Input deep soil temperature climatology GRIB file.
# Defaults to ${FIXgsm}/global_tg3clim.2.6x1.5.grb
# FNVEGC Input vegetation fraction climatology GRIB file.
# Defaults to ${FIXgsm}/global_vegfrac.0.144.decpercent.grb
# FNVETC Input vegetation type climatology GRIB file.
# Defaults to ${FIXgsm}/global_vegtype.igbp.t$JCAP_CASE.$LONB_CASE.$LATB_CASE.rg.grb
# FNSOTC Input soil type climatology GRIB file.
# Defaults to ${FIXgsm}/global_soiltype.statsgo.t$JCAP_CASE.$LONB_CASE.$LATB_CASE.rg.grb
# FNSMCC Input soil moisture climatology GRIB file.
# Defaults to ${FIXgsm}/global_soilmgldas.t$JCAP_CASE.$LONB_CASE.$LATB_CASE.grb
# FNVMNC Input min veg frac climatology GRIB file.
# Defaults to ${FIXgsm}/global_shdmin.0.144x0.144.grb
# FNVMXC Input max veg frac climatology GRIB file.
# Defaults to ${FIXgsm}/global_shdmax.0.144x0.144.grb
# FNSLPC Input slope type climatology GRIB file.
# Defaults to ${FIXgsm}/global_slope.1x1.grb
# FNABSC Input max snow albedo climatology GRIB file.
# Defaults to ${FIXgsm}/global_mxsnoalb.uariz.t$JCAP_CASE.$LONB_CASE.$LATB_CASE.rg.grb
# FNMSKH Input high resolution land mask GRIB file. Use to set mask for
# some of the input climatology fields. This is NOT the model mask.
# Defaults to ${FIXgsm}/seaice_newland.grb
# GSI_FILE GSI file on the gaussian grid containing NST increments.
# Defaults to NULL (no file).
# FNTSFA Input SST analysis GRIB file.
# Defaults to ${COMIN}/${PREINP}sstgrb${SUFINP}
# FNACNA Input sea ice analysis GRIB file.
# Defaults to ${COMIN}/${PREINP}engicegrb${SUFINP}
# FNSNOA Input snow analysis GRIB file.
# Defaults to ${COMIN}/${PREINP}snogrb${SUFINP}
# INISCRIPT Preprocessing script. Defaults to none.
# LOGSCRIPT Log posting script. Defaults to none.
# ERRSCRIPT Error processing script
# defaults to 'eval [[ $err = 0 ]]'
# ENDSCRIPT Postprocessing script
# defaults to none
# CDATE Output analysis date in yyyymmddhh format. Required.
# FHOUR Output forecast hour. Defaults to 00hr.
# LSOIL Number of soil layers. Defaults to 4.
# FSMCL2 Scale in days to relax to soil moisture climatology.
# Defaults to 60.
# FSLPL Scale in days to relax to slope type climatology.
# Defaults to 99999 (use first guess)
# FSOTL Scale in days to relax to soil type climatology.
# Defaults to 99999 (use first guess)
# FVETL Scale in days to relax to veg type climatology.
# Defaults to 99999 (use first guess)
# DELTSFC Cycling frequency in hours. Defaults to 0.
# IALB Integer flag for Albedo - 0 for Brigleb and 1 for Modis
# based albedo - defaults to 1
# ISOT Integer flag for soil type - 0 for zobler, 1 for statsgo
# Defaults to 1.
# IVEGSRC Integer flag for veg type - 1 for igbp, 2 for sib
# Defaults to 1.
# CYCLVARS Other namelist inputs to the cycle executable
# defaults to none set
# PGMOUT Executable standard output
# defaults to $pgmout, then to '&1'
# PGMERR Executable standard error
# defaults to $pgmerr, then to '&1'
# pgmout Executable standard output default
# pgmerr Executable standard error default
# REDOUT standard output redirect ('1>' or '1>>')
# defaults to '1>', or to '1>>' to append if $PGMOUT is a file
# REDERR standard error redirect ('2>' or '2>>')
# defaults to '2>', or to '2>>' to append if $PGMERR is a file
# VERBOSE Verbose flag (YES or NO)
# defaults to NO
# use_ufo Adjust sst and soil substrate temperature for differences
# between the filtered and unfiltered terrain. Default is true.
# DONST Process NST records when using NST model. Default is 'no'.
# ADJT_NSST_
# ONLY When .true. only do the NSST update (don't call the sfcsub
# component). Default is .false. - call sfcsub and update
# NSST.
# zsea1/zsea2 When running with NST model, this is the lower/upper bound
# of depth of sea temperature. In whole mm.
# MAX_TASKS_CY Normally, program should be run with a number of mpi tasks
# equal to the number of cubed-sphere tiles being processed.
# However, the current parallel scripts may over-specify the
# number of tasks. Set this variable to not process
# any ranks greater than max_tasks-1. Default is '99999',
# which means to process using all tasks.
# global_
# shared_ver Version number of global shared directory. Default is
# v15.0.0.
# OMP_NUM_
# THREADS_CY Number of omp threads to use. Default is 1.
# APRUNC Machine specific command to invoke the executable.
# Default is none.
#
# Exported Shell Variables:
# PGM Current program name
# pgm
# ERR Last return code
# err
#
# Modules and files referenced:
# scripts : $INISCRIPT
# $LOGSCRIPT
# $ERRSCRIPT
# $ENDSCRIPT
#
# programs : $CYCLEXEC
#
# fixed data : $FNGLAC
# $FNMXIC
# $FNTSFC
# $FNSNOC
# $FNZORC
# $FNALBC
# $FNALBC2
# $FNAISC
# $FNTG3C
# $FNVEGC
# $FNVETC
# $FNSOTC
# $FNSMCC
# $FNVMNC
# $FNVMXC
# $FNSLPC
# $FNABSC
# $FNMSKH
#
# input data : $FNTSFA
# $FNACNA
# $FNSNOA
#
# output data: $PGMOUT
# $PGMERR
#
# Remarks:
#
# Condition codes
# 0 - no problem encountered
# >0 - some problem encountered
#
# Control variable resolution priority
# 1 Command line argument.
# 2 Environment variable.
# 3 Inline default.
#
# Attributes:
# Language: POSIX shell
# Machine: IBM SP
#
################################################################################
# Set environment.
VERBOSE=${VERBOSE:-"NO"}
if [[ "$VERBOSE" = "YES" ]] ; then
echo $(date) EXECUTING $0 $* >&2
set -x
fi
CASE=${CASE:-C768}
# Directories.
global_shared_ver=${global_shared_ver:-v15.0.0}
BASEDIR=${BASEDIR:-${NWROOT:-/nwprod2}}
HOMEglobal=${HOMEglobal:-$BASEDIR/global_shared.${global_shared_ver}}
EXECgsm=${EXECgsm:-$HOMEglobal/exec}
FIXSUBDA=${FIXSUBDA:-fix/fix_am}
FIXgsm=${FIXgsm:-$HOMEglobal/$FIXSUBDA}
FIXfv3=${FIXfv3:-$HOMEglobal/fix/fix_fv3_gmted2010/$CASE}
DATA=${DATA:-$(pwd)}
COMIN=${COMIN:-$(pwd)}
COMOUT=${COMOUT:-$(pwd)}
# Filenames.
XC=${XC}
PREINP=${PREINP}
SUFINP=${SUFINP}
CYCLEXEC=${CYCLEXEC:-$EXECgsm/global_cycle$XC}
CDATE=${CDATE:?}
FHOUR=${FHOUR:-00}
CRES=$(echo $CASE | cut -c2-)
JCAP_CASE=$((2*CRES-2))
LONB_CASE=$((4*CRES))
LATB_CASE=$((2*CRES))
DELTSFC=${DELTSFC:-0}
LSOIL=${LSOIL:-4}
FSMCL2=${FSMCL2:-60}
FSLPL=${FSLPL:-99999.}
FSOTL=${FSOTL:-99999.}
FVETL=${FVETL:-99999.}
IALB=${IALB:-1}
ISOT=${ISOT:-1}
IVEGSRC=${IVEGSRC:-1}
CYCLVARS=${CYCLVARS:-""}
use_ufo=${use_ufo:-.true.}
DONST=${DONST:-"NO"}
ADJT_NST_ONLY=${ADJT_NST_ONLY:-.false.}
zsea1=${zsea1:-0}
zsea2=${zsea2:-0}
MAX_TASKS_CY=${MAX_TASKS_CY:-99999}
FNGLAC=${FNGLAC:-${FIXgsm}/global_glacier.2x2.grb}
FNMXIC=${FNMXIC:-${FIXgsm}/global_maxice.2x2.grb}
FNTSFC=${FNTSFC:-${FIXgsm}/RTGSST.1982.2012.monthly.clim.grb}
FNSNOC=${FNSNOC:-${FIXgsm}/global_snoclim.1.875.grb}
FNZORC=${FNZORC:-igbp}
FNALBC2=${FNALBC2:-${FIXgsm}/global_albedo4.1x1.grb}
FNAISC=${FNAISC:-${FIXgsm}/CFSR.SEAICE.1982.2012.monthly.clim.grb}
FNTG3C=${FNTG3C:-${FIXgsm}/global_tg3clim.2.6x1.5.grb}
FNVEGC=${FNVEGC:-${FIXgsm}/global_vegfrac.0.144.decpercent.grb}
FNALBC=${FNALBC:-${FIXgsm}/global_snowfree_albedo.bosu.t$JCAP_CASE.$LONB_CASE.$LATB_CASE.rg.grb}
FNVETC=${FNVETC:-${FIXgsm}/global_vegtype.igbp.t$JCAP_CASE.$LONB_CASE.$LATB_CASE.rg.grb}
FNSOTC=${FNSOTC:-${FIXgsm}/global_soiltype.statsgo.t$JCAP_CASE.$LONB_CASE.$LATB_CASE.rg.grb}
FNSMCC=${FNSMCC:-${FIXgsm}/global_soilmgldas.t$JCAP_CASE.$LONB_CASE.$LATB_CASE.grb}
FNABSC=${FNABSC:-${FIXgsm}/global_mxsnoalb.uariz.t$JCAP_CASE.$LONB_CASE.$LATB_CASE.rg.grb}
FNVMNC=${FNVMNC:-${FIXgsm}/global_shdmin.0.144x0.144.grb}
FNVMXC=${FNVMXC:-${FIXgsm}/global_shdmax.0.144x0.144.grb}
FNSLPC=${FNSLPC:-${FIXgsm}/global_slope.1x1.grb}
FNMSKH=${FNMSKH:-${FIXgsm}/seaice_newland.grb}
GSI_FILE=${GSI_FILE:-"NULL"}
FNTSFA=${FNTSFA:-${COMIN}/${PREINP}sstgrb${SUFINP}}
FNACNA=${FNACNA:-${COMIN}/${PREINP}engicegrb${SUFINP}}
FNSNOA=${FNSNOA:-${COMIN}/${PREINP}snogrb${SUFINP}}
export INISCRIPT=${INISCRIPT}
export ERRSCRIPT=${ERRSCRIPT:-'eval [[ $err = 0 ]]'}
export LOGSCRIPT=${LOGSCRIPT}
export ENDSCRIPT=${ENDSCRIPT}
# Other variables.
export PGMOUT=${PGMOUT:-${pgmout:-'&1'}}
export PGMERR=${PGMERR:-${pgmerr:-'&2'}}
export REDOUT=${REDOUT:-'1>'}
export REDERR=${REDERR:-'2>'}
# Set defaults
################################################################################
# Preprocessing
$INISCRIPT
pwd=$(pwd)
if [[ -d $DATA ]]
then
mkdata=NO
else
mkdir -p $DATA
mkdata=YES
fi
cd $DATA||exit 99
[[ -d $COMOUT ]]||mkdir -p $COMOUT
# If the appropriate resolution fix file is not present, use the highest resolution available (T1534)
[[ ! -f $FNALBC ]] && FNALBC="$FIXgsm/global_snowfree_albedo.bosu.t1534.3072.1536.rg.grb"
[[ ! -f $FNVETC ]] && FNVETC="$FIXgsm/global_vegtype.igbp.t1534.3072.1536.rg.grb"
[[ ! -f $FNSOTC ]] && FNSOTC="$FIXgsm/global_soiltype.statsgo.t1534.3072.1536.rg.grb"
[[ ! -f $FNABSC ]] && FNABSC="$FIXgsm/global_mxsnoalb.uariz.t1534.3072.1536.rg.grb"
[[ ! -f $FNSMCC ]] && FNSMCC="$FIXgsm/global_soilmgldas.t1534.3072.1536.grb"
################################################################################
# Make surface analysis
export PGM=$CYCLEXEC
export pgm=$PGM
$LOGSCRIPT
iy=$(echo $CDATE|cut -c1-4)
im=$(echo $CDATE|cut -c5-6)
id=$(echo $CDATE|cut -c7-8)
ih=$(echo $CDATE|cut -c9-10)
export OMP_NUM_THREADS=${OMP_NUM_THREADS_CY:-${CYCLETHREAD:-1}}
cat << EOF > fort.35
&NAMSFC
FNGLAC="$FNGLAC",
FNMXIC="$FNMXIC",
FNTSFC="$FNTSFC",
FNSNOC="$FNSNOC",
FNZORC="$FNZORC",
FNALBC="$FNALBC",
FNALBC2="$FNALBC2",
FNAISC="$FNAISC",
FNTG3C="$FNTG3C",
FNVEGC="$FNVEGC",
FNVETC="$FNVETC",
FNSOTC="$FNSOTC",
FNSMCC="$FNSMCC",
FNVMNC="$FNVMNC",
FNVMXC="$FNVMXC",
FNSLPC="$FNSLPC",
FNABSC="$FNABSC",
FNMSKH="$FNMSKH",
FNTSFA="$FNTSFA",
FNACNA="$FNACNA",
FNSNOA="$FNSNOA",
LDEBUG=.false.,
FSLPL=$FSLPL,
FSOTL=$FSOTL,
FVETL=$FVETL,
FSMCL(2)=$FSMCL2,
FSMCL(3)=$FSMCL2,
FSMCL(4)=$FSMCL2,
$CYCLVARS
/
EOF
cat << EOF > fort.36
&NAMCYC
idim=$CRES, jdim=$CRES, lsoil=$LSOIL,
iy=$iy, im=$im, id=$id, ih=$ih, fh=$FHOUR,
deltsfc=$DELTSFC,ialb=$IALB,use_ufo=$use_ufo,donst=$DONST,
adjt_nst_only=$ADJT_NST_ONLY,isot=$ISOT,ivegsrc=$IVEGSRC,
zsea1_mm=$zsea1,zsea2_mm=$zsea2,MAX_TASKS=$MAX_TASKS_CY
/
EOF
cat << EOF > fort.37
&NAMSFCD
GSI_FILE="$GSI_FILE",
/
EOF
#$APRUNCY $CYCLEXEC $REDOUT$PGMOUT $REDERR$PGMERR
export OMP_NUM_THREADS=4
export OMP_STACKSIZE=256M
nprocs=6 mpitaskspernode=6 OMP_STACKSIZE=$OMP_STACKSIZE OMP_NUM_THREADS=$OMP_NUM_THREADS ${scriptsdir}/runmpi
export ERR=$?
export err=$ERR
$ERRSCRIPT||exit 2
################################################################################
# Postprocessing
cd $pwd
[[ $mkdata = YES ]]&&rmdir $DATA
$ENDSCRIPT
set +x
if [[ "$VERBOSE" = "YES" ]]
then
echo $(date) EXITING $0 with return code $err >&2
fi
exit $err