{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":473844049,"defaultBranch":"main","name":"BLAZE","ownerLogin":"shimlab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2022-03-25T02:37:05.000Z","ownerAvatar":"https://github.com/avatars/u/16903760?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1723779307.0","currentOid":""},"activityList":{"items":[{"before":"b030bfc700d4da20edb09785c1e500aea4ad1e9d","after":"2e4f92e68ee7bd273de44de8df77a79888295aa7","ref":"refs/heads/main","pushedAt":"2024-09-29T04:35:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"youyupei","name":"Yupei You","path":"/youyupei","primaryAvatarUrl":"https://github.com/avatars/u/38273260?s=80&v=4"},"commit":{"message":"Change of strand definition and Add restrand feature\n\nFrom this commit, the + strand stands for the transcript strand while in previous version is stand for reverse strand (the previous definition was based on the orientation of BC)","shortMessageHtmlLink":"Change of strand definition and Add restrand feature"}},{"before":"be32668808fd784cf6dc0062b652f51dba948c2c","after":"b030bfc700d4da20edb09785c1e500aea4ad1e9d","ref":"refs/heads/main","pushedAt":"2024-09-29T02:51:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"youyupei","name":"Yupei You","path":"/youyupei","primaryAvatarUrl":"https://github.com/avatars/u/38273260?s=80&v=4"},"commit":{"message":"Update format the output fastq read id: @{Cell barcode}_{UMI}#{read_id}_{strand}\\tCB:Z:{Cell barcode}\\tUB:Z:{UMI}\n\nThe UMI and BC were repeated for backwards support","shortMessageHtmlLink":"Update format the output fastq read id: @{Cell barcode}_{UMI}#{read_i…"}},{"before":"253f878a8cafa7b47b4737fbcec5072a5d483545","after":"be32668808fd784cf6dc0062b652f51dba948c2c","ref":"refs/heads/main","pushedAt":"2024-08-16T04:37:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"youyupei","name":"Yupei You","path":"/youyupei","primaryAvatarUrl":"https://github.com/avatars/u/38273260?s=80&v=4"},"commit":{"message":"add umi_len option, fix default length for v2 kits","shortMessageHtmlLink":"add umi_len option, fix default length for v2 kits"}},{"before":"33d05bc31766fb6d25d6a747afd11973ef86e2db","after":"253f878a8cafa7b47b4737fbcec5072a5d483545","ref":"refs/heads/main","pushedAt":"2024-08-16T04:04:43.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"youyupei","name":"Yupei You","path":"/youyupei","primaryAvatarUrl":"https://github.com/avatars/u/38273260?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"aac093478e96233f5844c64c1a23a7f1bdc7ff46","after":"33d05bc31766fb6d25d6a747afd11973ef86e2db","ref":"refs/heads/main","pushedAt":"2024-08-16T03:39:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"youyupei","name":"Yupei You","path":"/youyupei","primaryAvatarUrl":"https://github.com/avatars/u/38273260?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"3fd4fae57aeda605e58f2e1c118b0c2ddf1f5176","after":"aac093478e96233f5844c64c1a23a7f1bdc7ff46","ref":"refs/heads/main","pushedAt":"2024-08-16T03:35:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"youyupei","name":"Yupei You","path":"/youyupei","primaryAvatarUrl":"https://github.com/avatars/u/38273260?s=80&v=4"},"commit":{"message":"Release 2.4.0","shortMessageHtmlLink":"Release 2.4.0"}},{"before":"8436ebe9a88a7ec164fe8827855d220a3fcae8a3","after":"3fd4fae57aeda605e58f2e1c118b0c2ddf1f5176","ref":"refs/heads/main","pushedAt":"2024-08-15T07:14:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"youyupei","name":"Yupei You","path":"/youyupei","primaryAvatarUrl":"https://github.com/avatars/u/38273260?s=80&v=4"},"commit":{"message":"version bump","shortMessageHtmlLink":"version bump"}},{"before":"ee14ca784227a16004b12d91493927d498f797e1","after":"8436ebe9a88a7ec164fe8827855d220a3fcae8a3","ref":"refs/heads/main","pushedAt":"2024-08-15T07:12:34.000Z","pushType":"push","commitsCount":6,"pusher":{"login":"youyupei","name":"Yupei You","path":"/youyupei","primaryAvatarUrl":"https://github.com/avatars/u/38273260?s=80&v=4"},"commit":{"message":"Add 5' kit support (merge the support-5prim-kit branch)","shortMessageHtmlLink":"Add 5' kit support (merge the support-5prim-kit branch)"}},{"before":"58469e745df50806ef4d37b0e5efe2fa5ad10341","after":"52997b8b8d54f8259aceae22199b7ccbc2d4a43d","ref":"refs/heads/support-5prim-kit","pushedAt":"2024-08-15T05:28:17.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"youyupei","name":"Yupei You","path":"/youyupei","primaryAvatarUrl":"https://github.com/avatars/u/38273260?s=80&v=4"},"commit":{"message":"Add support for 5v3, the previous argument 5v3 is actually for 5v2.","shortMessageHtmlLink":"Add support for 5v3, the previous argument 5v3 is actually for 5v2."}},{"before":"f60973eff401337338a3ec656af3818ab9c8bec6","after":"58469e745df50806ef4d37b0e5efe2fa5ad10341","ref":"refs/heads/support-5prim-kit","pushedAt":"2024-08-15T04:48:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"youyupei","name":"Yupei You","path":"/youyupei","primaryAvatarUrl":"https://github.com/avatars/u/38273260?s=80&v=4"},"commit":{"message":"Add support for 5v3, the previous argument 5v3 is actually for 5v2.","shortMessageHtmlLink":"Add support for 5v3, the previous argument 5v3 is actually for 5v2."}},{"before":"6565e568ea02280201041fb50db4b46b519e52d8","after":"ee14ca784227a16004b12d91493927d498f797e1","ref":"refs/heads/main","pushedAt":"2024-07-28T01:47:29.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"youyupei","name":"Yupei You","path":"/youyupei","primaryAvatarUrl":"https://github.com/avatars/u/38273260?s=80&v=4"},"commit":{"message":"Critical bug fix","shortMessageHtmlLink":"Critical bug fix"}},{"before":"d0b1b2b84d00c6b3f54dcd15ddb86d0e20c23d55","after":"6565e568ea02280201041fb50db4b46b519e52d8","ref":"refs/heads/main","pushedAt":"2024-07-01T05:47:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"youyupei","name":"Yupei You","path":"/youyupei","primaryAvatarUrl":"https://github.com/avatars/u/38273260?s=80&v=4"},"commit":{"message":"add minQ option for reads assignment\n\nThe reads with putative barcode lower than the specified number will not be used. This is currently in effect when calling the read_assignment.assign_read function.","shortMessageHtmlLink":"add minQ option for reads assignment"}},{"before":"5680b8c69295738093663492ee821197311c58e6","after":"d0b1b2b84d00c6b3f54dcd15ddb86d0e20c23d55","ref":"refs/heads/main","pushedAt":"2024-06-22T10:34:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"youyupei","name":"Yupei You","path":"/youyupei","primaryAvatarUrl":"https://github.com/avatars/u/38273260?s=80&v=4"},"commit":{"message":"add --force-cells option","shortMessageHtmlLink":"add --force-cells option"}},{"before":"65a392e78c76f540a1772e648a8db5fd8c8f0a5f","after":"5680b8c69295738093663492ee821197311c58e6","ref":"refs/heads/main","pushedAt":"2024-06-22T09:41:21.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"youyupei","name":"Yupei You","path":"/youyupei","primaryAvatarUrl":"https://github.com/avatars/u/38273260?s=80&v=4"},"commit":{"message":"update the parser","shortMessageHtmlLink":"update the parser"}},{"before":"6da0b8dd3216ad600b74dd9ae4bca589655827a9","after":"65a392e78c76f540a1772e648a8db5fd8c8f0a5f","ref":"refs/heads/main","pushedAt":"2024-05-17T01:55:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"youyupei","name":"Yupei You","path":"/youyupei","primaryAvatarUrl":"https://github.com/avatars/u/38273260?s=80&v=4"},"commit":{"message":"version bump","shortMessageHtmlLink":"version bump"}},{"before":"a961d60dfe3c745f94571383be84e3ffe26dd576","after":"6da0b8dd3216ad600b74dd9ae4bca589655827a9","ref":"refs/heads/main","pushedAt":"2024-05-17T01:46:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"youyupei","name":"Yupei You","path":"/youyupei","primaryAvatarUrl":"https://github.com/avatars/u/38273260?s=80&v=4"},"commit":{"message":"start to create output folder if doesn't exist","shortMessageHtmlLink":"start to create output folder if doesn't exist"}},{"before":"c9f7b4f7a299c1a40266f960d520cee65fcd2caf","after":"a961d60dfe3c745f94571383be84e3ffe26dd576","ref":"refs/heads/main","pushedAt":"2024-05-15T01:10:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"youyupei","name":"Yupei You","path":"/youyupei","primaryAvatarUrl":"https://github.com/avatars/u/38273260?s=80&v=4"},"commit":{"message":"Update unittest.yml","shortMessageHtmlLink":"Update unittest.yml"}},{"before":"2f7409f366d17d0aeb115689131bc620ea5254d4","after":"c9f7b4f7a299c1a40266f960d520cee65fcd2caf","ref":"refs/heads/main","pushedAt":"2024-05-15T01:07:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"youyupei","name":"Yupei You","path":"/youyupei","primaryAvatarUrl":"https://github.com/avatars/u/38273260?s=80&v=4"},"commit":{"message":"add the BC length to config.py","shortMessageHtmlLink":"add the BC length to config.py"}},{"before":"2f7409f366d17d0aeb115689131bc620ea5254d4","after":"f60973eff401337338a3ec656af3818ab9c8bec6","ref":"refs/heads/support-5prim-kit","pushedAt":"2024-05-15T00:21:18.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"youyupei","name":"Yupei You","path":"/youyupei","primaryAvatarUrl":"https://github.com/avatars/u/38273260?s=80&v=4"},"commit":{"message":"Merge pull request #17 from atrull314/feature_5_prime\n\n5 Prime Support","shortMessageHtmlLink":"Merge pull request #17 from atrull314/feature_5_prime"}},{"before":null,"after":"2f7409f366d17d0aeb115689131bc620ea5254d4","ref":"refs/heads/support-5prim-kit","pushedAt":"2024-05-15T00:18:50.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"youyupei","name":"Yupei You","path":"/youyupei","primaryAvatarUrl":"https://github.com/avatars/u/38273260?s=80&v=4"},"commit":{"message":"release 2.2.0","shortMessageHtmlLink":"release 2.2.0"}},{"before":"8a13b3932953488deb4cf3bc76f5457405cbc310","after":"2f7409f366d17d0aeb115689131bc620ea5254d4","ref":"refs/heads/main","pushedAt":"2024-03-19T00:44:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"youyupei","name":"Yupei You","path":"/youyupei","primaryAvatarUrl":"https://github.com/avatars/u/38273260?s=80&v=4"},"commit":{"message":"release 2.2.0","shortMessageHtmlLink":"release 2.2.0"}},{"before":"7d89da612de47815351fed0ae327829234674463","after":"8a13b3932953488deb4cf3bc76f5457405cbc310","ref":"refs/heads/main","pushedAt":"2024-03-14T02:56:06.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"youyupei","name":"Yupei You","path":"/youyupei","primaryAvatarUrl":"https://github.com/avatars/u/38273260?s=80&v=4"},"commit":{"message":"update github action","shortMessageHtmlLink":"update github action"}},{"before":"728f5c703db07893104d23d7fee7715c41cb109b","after":"7d89da612de47815351fed0ae327829234674463","ref":"refs/heads/main","pushedAt":"2024-03-14T02:29:11.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"youyupei","name":"Yupei You","path":"/youyupei","primaryAvatarUrl":"https://github.com/avatars/u/38273260?s=80&v=4"},"commit":{"message":"update github action","shortMessageHtmlLink":"update github action"}},{"before":"2fa2ab2246ca33fecb9a25af609c82f8850fb4bc","after":"728f5c703db07893104d23d7fee7715c41cb109b","ref":"refs/heads/main","pushedAt":"2024-03-14T02:23:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"youyupei","name":"Yupei You","path":"/youyupei","primaryAvatarUrl":"https://github.com/avatars/u/38273260?s=80&v=4"},"commit":{"message":"update github action","shortMessageHtmlLink":"update github action"}},{"before":"57f94d6a83679aef223dfee02af8b5da0e4982cf","after":"2fa2ab2246ca33fecb9a25af609c82f8850fb4bc","ref":"refs/heads/trim_T","pushedAt":"2024-03-14T01:41:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"youyupei","name":"Yupei You","path":"/youyupei","primaryAvatarUrl":"https://github.com/avatars/u/38273260?s=80&v=4"},"commit":{"message":"update workflow to only trigger on main branch with tag","shortMessageHtmlLink":"update workflow to only trigger on main branch with tag"}},{"before":"caf3ae41598a36c6f87e4ba376d006631a23eaec","after":"2fa2ab2246ca33fecb9a25af609c82f8850fb4bc","ref":"refs/heads/main","pushedAt":"2024-03-14T01:41:18.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"youyupei","name":"Yupei You","path":"/youyupei","primaryAvatarUrl":"https://github.com/avatars/u/38273260?s=80&v=4"},"commit":{"message":"update workflow to only trigger on main branch with tag","shortMessageHtmlLink":"update workflow to only trigger on main branch with tag"}},{"before":"2bf73a9619e7486a740579ebe659708de9aa0b94","after":"57f94d6a83679aef223dfee02af8b5da0e4982cf","ref":"refs/heads/trim_T","pushedAt":"2024-02-27T05:30:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"youyupei","name":"Yupei You","path":"/youyupei","primaryAvatarUrl":"https://github.com/avatars/u/38273260?s=80&v=4"},"commit":{"message":"add back the missing @ from the read id","shortMessageHtmlLink":"add back the missing @ from the read id"}},{"before":"88d005d2f843b16be281619b641fe070f5432ac7","after":"2bf73a9619e7486a740579ebe659708de9aa0b94","ref":"refs/heads/trim_T","pushedAt":"2024-02-22T05:04:39.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"youyupei","name":"Yupei You","path":"/youyupei","primaryAvatarUrl":"https://github.com/avatars/u/38273260?s=80&v=4"},"commit":{"message":"bug fix","shortMessageHtmlLink":"bug fix"}},{"before":"0c717a1454849ee261f5cf45e62f9fc45ba36e4f","after":"88d005d2f843b16be281619b641fe070f5432ac7","ref":"refs/heads/trim_T","pushedAt":"2024-02-22T04:52:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"youyupei","name":"Yupei You","path":"/youyupei","primaryAvatarUrl":"https://github.com/avatars/u/38273260?s=80&v=4"},"commit":{"message":"bug fix","shortMessageHtmlLink":"bug fix"}},{"before":"5a0aa82830666b649746b18d54e8cf4b6598eda1","after":"0c717a1454849ee261f5cf45e62f9fc45ba36e4f","ref":"refs/heads/trim_T","pushedAt":"2024-02-22T00:32:43.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"youyupei","name":"Yupei You","path":"/youyupei","primaryAvatarUrl":"https://github.com/avatars/u/38273260?s=80&v=4"},"commit":{"message":"add standalone script for trimming polyT if there were not trimmed already","shortMessageHtmlLink":"add standalone script for trimming polyT if there were not trimmed al…"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0yOVQwNDozNTozMi4wMDAwMDBazwAAAATDr9pi","endCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wMi0yMlQwMDozMjo0My4wMDAwMDBazwAAAAQBb8kx"}},"title":"Activity · shimlab/BLAZE"}