Secondary analysis pipelines for the Human Cell Atlas.
- Smart-seq2 secondary analysis pipeline
Bold indicates that this pipeline is blessed
For now, use git clone git clone git@github.com:HumanCellAtlas/skylab.git and run the pipeline in cromwell.
- WDL and Cromwell Documentation
- Running WDLs in Cromwell
[TODO] Update this section with better instructions on how to easily try our pipelines.
- Agora
- Dockstore
Pipelines are released in tagged releases to track changes in version of pipeline, and to track when a pipeline is blessed.