diff --git a/CHANGELOG.md b/CHANGELOG.md new file mode 100644 index 0000000..04e9eda --- /dev/null +++ b/CHANGELOG.md @@ -0,0 +1,44 @@ +# Change Log + +## Version 0.1.3 (08/27/2021) + +### Changed +- Migrated from Travis CI to GitHub Actions (#127). +- Made `--map-as-rank` default when only mapping file(s) are provided (#132). +- Renamed `--normalize|-z` as `--frac|-f` (#128). +- Modified core algorithm which slightly improved performance (#124). + +### Added +- Added `tool normalize` command, with multiple features (#124). +- Added the feature to collapse a stratified table (#126). +- Created an WoL FTP server, and added link to it (#118). +- Added an WoL standard operating procedure (`wolsop.sh`) and documentation (#116). +- Added first [citation](https://www.biorxiv.org/content/10.1101/2021.04.04.438427v1.abstract) of Woltka (#111). +- Added protocols for Bowtie2 / SHOGUN and Fastp (#121). +- Added discussion about mapping uniqueness (#131). + +### Fixed +- Fixed free-rank classification subject not found issue (#120). +- Corrected paths to example files and directories (#117). + + +## Version 0.1.2 (03/31/2021) + +### Changed +- Updated Qiita documentation (#107). +- Renamed "gOTU" with "OGU" (#104). + +### Added +- Published at PyPI. Can be installed by `pip install woltka` (#108). +- Added instructions for using MetaCyc and KEGG (#99, #101). +- Added `tool collapse` command, which supports one-to-many classification (#99). + +### Fixed +- Fixed Handling of zero length alignment (#105). + + +## Version 0.1.1 (02/17/2021) + +### Added +- First official release. + diff --git a/woltka/__init__.py b/woltka/__init__.py index 98f5557..2b72289 100644 --- a/woltka/__init__.py +++ b/woltka/__init__.py @@ -10,7 +10,7 @@ __name__ = 'woltka' __description__ = 'Web of Life ToolKit App' -__version__ = '0.1.2' +__version__ = '0.1.3' __license__ = 'BSD-3-Clause' __author__ = 'Qiyun Zhu' __email__ = 'qiyunzhu@gmail.com'