{"payload":{"pageCount":2,"repositories":[{"type":"Public","name":"miaTime","owner":"microbiome","isFork":false,"description":"Microbiome time series analysis","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":3,"issueCount":17,"starsCount":5,"forksCount":4,"license":"Artistic License 2.0","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,1,0,0,0,0,1,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T07:04:32.801Z"}},{"type":"Public","name":"mia","owner":"microbiome","isFork":false,"description":"Microbiome analysis","allTopics":["analysis","bioconductor","microbiome"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":6,"issueCount":26,"starsCount":47,"forksCount":28,"license":"Artistic License 2.0","participation":[4,3,0,2,7,4,0,0,0,1,0,0,0,0,0,0,0,0,1,0,1,2,2,5,0,1,0,3,1,3,6,5,4,1,18,2,1,6,4,0,6,6,2,5,2,2,4,1,1,1,2,2],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T05:28:09.743Z"}},{"type":"Public","name":"outreach","owner":"microbiome","isFork":false,"description":"Publications, slides, and posters","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":2,"starsCount":0,"forksCount":3,"license":null,"participation":[0,1,1,0,0,0,0,0,0,0,3,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,5,1,0,1,2,6,0,0,2,14,1,0,0,0,2,2,0,0,0,4],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-17T12:04:57.520Z"}},{"type":"Public","name":"miaDemo","owner":"microbiome","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Dockerfile","color":"#384d54"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":2,"license":"Other","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5,3,0,0,7,0,44],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-16T19:41:02.638Z"}},{"type":"Public","name":"miaViz","owner":"microbiome","isFork":false,"description":"Microbiome Analysis Plotting and Visualization","allTopics":["visualization","bioconductor","plotting","microbiome","microbiome-analysis"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":2,"issueCount":11,"starsCount":10,"forksCount":11,"license":"Artistic License 2.0","participation":[0,2,3,3,2,1,0,0,0,0,1,0,0,0,0,0,0,0,1,0,0,0,0,2,0,0,0,0,0,1,0,2,1,0,1,0,1,1,0,0,6,2,4,2,2,1,2,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-16T08:21:34.579Z"}},{"type":"Public","name":"OMA","owner":"microbiome","isFork":false,"description":"Orchestrating Microbiome Analysis","allTopics":["r","bioconductor","microbiome","microbiome-analysis-book"],"primaryLanguage":{"name":"TeX","color":"#3D6117"},"pullRequestCount":7,"issueCount":33,"starsCount":84,"forksCount":43,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-16T05:29:33.178Z"}},{"type":"Public","name":"iSEEtree","owner":"microbiome","isFork":false,"description":"extension of iSEE for TreeSE","allTopics":["visualisation","microbiome","shiny-apps"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":2,"starsCount":3,"forksCount":2,"license":null,"participation":[0,0,0,0,11,24,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23,12,4,6,10,16,22,5,20,6,6,0,4,10,0,1,0,2,0,0,2,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-11T15:38:19.616Z"}},{"type":"Public","name":"microbiome.github.com","owner":"microbiome","isFork":false,"description":"microbiome project - home page","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":1,"starsCount":1,"forksCount":3,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,1,3,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-17T16:07:59.351Z"}},{"type":"Public","name":"microbiomeDataSets","owner":"microbiome","isFork":false,"description":"Experiment Hub based microbiome datasets","allTopics":["bioconductor","microbiome","microbiome-datasets","experiment-hub"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":1,"issueCount":1,"starsCount":5,"forksCount":4,"license":null,"participation":[0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,18,1,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-15T11:19:57.910Z"}},{"type":"Public","name":"miaSim","owner":"microbiome","isFork":false,"description":"microbiome data simulation package","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":1,"issueCount":4,"starsCount":18,"forksCount":10,"license":"Artistic License 2.0","participation":[0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,4,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5,1,0,0,1,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-06T09:56:55.627Z"}},{"type":"Public","name":"data","owner":"microbiome","isFork":false,"description":"Microbiome datasets of the mia ecosystem","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-26T07:33:25.556Z"}},{"type":"Public","name":"qiime2R","owner":"microbiome","isFork":true,"description":"Import qiime2 artifacts to R","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":50,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-22T09:44:14.868Z"}},{"type":"Public","name":"MGnifyR","owner":"microbiome","isFork":true,"description":"R package for searching, downloading and analysis of EBI MGnify metagenomics data","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":11,"license":"Artistic License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-28T15:16:24.831Z"}},{"type":"Public","name":"course_2023_bergen","owner":"microbiome","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"TeX","color":"#3D6117"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-01T08:14:48.088Z"}},{"type":"Public","name":"microbiome","owner":"microbiome","isFork":false,"description":"microbiome R package","allTopics":["human-microbiome","population-study","hitchip","hitchip-atlas","r","microbiology","microbiome","microbiome-analysis","phyloseq"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":30,"starsCount":285,"forksCount":54,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-04T09:38:40.882Z"}},{"type":"Public","name":"bluster","owner":"microbiome","isFork":true,"description":"Clone of the Bioconductor repository for the bluster package.","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-02T09:19:22.761Z"}},{"type":"Public","name":"ANCOMBC","owner":"microbiome","isFork":true,"description":"Differential abundance (DA) and correlation analyses for microbial absolute abundance data","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":27,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-07-06T16:24:26.578Z"}},{"type":"Public","name":"course_2023_oulu","owner":"microbiome","isFork":false,"description":"Oulu 2023 course","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-06-20T12:32:23.839Z"}},{"type":"Public","name":"RPA","owner":"microbiome","isFork":false,"description":"Robust Probabilistic Averaging","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-08T10:24:52.129Z"}},{"type":"Public","name":"phyloseq","owner":"microbiome","isFork":true,"description":"phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":188,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-14T13:52:58.987Z"}},{"type":"Public","name":"scater","owner":"microbiome","isFork":true,"description":"Clone of the Bioconductor repository for the scater package.","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":38,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-09T21:15:56.002Z"}},{"type":"Public","name":"course_mia","owner":"microbiome","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-02-19T17:21:08.787Z"}},{"type":"Public","name":"miacourse","owner":"microbiome","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"TeX","color":"#3D6117"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-02-19T13:44:54.797Z"}},{"type":"Public","name":"dada2","owner":"microbiome","isFork":true,"description":"Accurate sample inference from amplicon data with single nucleotide resolution","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":142,"license":"GNU Lesser General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-12-10T19:29:50.535Z"}},{"type":"Public","name":"examples","owner":"microbiome","isFork":false,"description":"Example solutions to programming tasks","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-11-30T15:47:23.484Z"}},{"type":"Public","name":"course_2022_radboud","owner":"microbiome","isFork":true,"description":"Radboud summer school 2022","allTopics":[],"primaryLanguage":{"name":"TeX","color":"#3D6117"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":5,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-07-11T10:37:56.975Z"}},{"type":"Public template","name":"course_2022_oulu","owner":"microbiome","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"TeX","color":"#3D6117"},"pullRequestCount":1,"issueCount":2,"starsCount":0,"forksCount":5,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-07-10T22:09:57.689Z"}},{"type":"Public","name":"course_2022_turku","owner":"microbiome","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"TeX","color":"#3D6117"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-05-17T13:19:54.493Z"}},{"type":"Public","name":"tutorials","owner":"microbiome","isFork":false,"description":"Tutorials","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":3,"starsCount":13,"forksCount":10,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-04-02T19:21:17.016Z"}},{"type":"Public","name":"benchmarking","owner":"microbiome","isFork":false,"description":"Benchmarking miaverse performance ","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":0,"license":"Artistic License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-03-06T19:33:04.348Z"}}],"repositoryCount":41,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"microbiome repositories"}