{"payload":{"pageCount":1,"repositories":[{"type":"Public","name":"LocusMasterTE_paper","owner":"jasonwong-lab","isFork":false,"description":"Scripts for figures and results in LocusMasterTE paper","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-05T07:03:34.429Z"}},{"type":"Public","name":"smk_sv","owner":"jasonwong-lab","isFork":false,"description":"A snakemake pipeline to call structure variants from ONT data","allTopics":["bioinformatics","bioinformatics-pipeline","structural-variations","structural-variants","long-read-sequencing","structural-variation-calling","oxford-nanopore-sequencing"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-24T03:58:27.186Z"}},{"type":"Public","name":"ERCC2","owner":"jasonwong-lab","isFork":false,"description":"Scripts for Barbour et al. ERCC2 mutations alter the genomic distribution pattern of somatic mutations and are independently prognostic in bladder cancer ","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-07T00:52:48.263Z"}},{"type":"Public","name":"withings_api_dev","owner":"jasonwong-lab","isFork":false,"description":"Template for flask application to access Withings API","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-21T07:37:07.640Z"}},{"type":"Public","name":"GenomicsWorkshop","owner":"jasonwong-lab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-28T06:54:43.266Z"}},{"type":"Public","name":"LocusMasterTE","owner":"jasonwong-lab","isFork":false,"description":" Integrating long read sequencing enhances short read-based locus-specific transposable element quantification ","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-24T10:06:18.590Z"}},{"type":"Public","name":"HKU-Practical-Bioinformatics","owner":"jasonwong-lab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-24T10:21:58.125Z"}},{"type":"Public","name":"HKU_STEM","owner":"jasonwong-lab","isFork":false,"description":"HKU STEM Data Science Lab for SARS-CoV2 bioinformatics","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-07-22T16:47:12.661Z"}},{"type":"Public","name":"genomics-exercise","owner":"jasonwong-lab","isFork":false,"description":"Genomics exercise from Jason Wong lab @ HKU","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-10-14T04:14:27.293Z"}},{"type":"Public","name":"TMB","owner":"jasonwong-lab","isFork":false,"description":"Tumour mutation burden correction","allTopics":[],"primaryLanguage":null,"pullRequestCount":1,"issueCount":0,"starsCount":2,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-10-14T01:46:28.335Z"}},{"type":"Public","name":"cBioportalDataClawler","owner":"jasonwong-lab","isFork":false,"description":"Some simple Python scripts to download data files from <a href=\"https://www.cbioportal.org/\" rel=\"nofollow\">https://www.cbioportal.org/</a>","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-01-04T13:28:21.212Z"}},{"type":"Public","name":"RNAseq-analysis-pipeline","owner":"jasonwong-lab","isFork":false,"description":"This guidebook aims to demonstrate the RNA-seq analysis pipeline and the basics statistical analysis behind Differential Gene expression detection ","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-06-09T03:22:24.336Z"}},{"type":"Public","name":"MMR","owner":"jasonwong-lab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-10-09T04:46:45.424Z"}}],"repositoryCount":13,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"jasonwong-lab repositories"}