{"payload":{"pageCount":2,"repositories":[{"type":"Public","name":"Freyja-SRA","owner":"andersen-lab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":1,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-24T02:35:23.567Z"}},{"type":"Public","name":"Freyja-data","owner":"andersen-lab","isFork":false,"description":"Previous versions of Freyja barcodes and metadata files","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-24T00:47:34.766Z"}},{"type":"Public","name":"bjorn","owner":"andersen-lab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":11,"starsCount":20,"forksCount":4,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-23T17:20:04.799Z"}},{"type":"Public","name":"Freyja","owner":"andersen-lab","isFork":false,"description":"Depth-weighted De-Mixing ","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":5,"starsCount":100,"forksCount":29,"license":"BSD 2-Clause \"Simplified\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-23T01:29:14.950Z"}},{"type":"Public","name":"avian-influenza","owner":"andersen-lab","isFork":false,"description":"Consensus sequences for U.S. H5N1 clade 2.3.4.4b","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":1,"starsCount":23,"forksCount":5,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-22T18:03:53.041Z"}},{"type":"Public","name":"MixAmp","owner":"andersen-lab","isFork":false,"description":"Amplicon read simulator","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-22T15:48:44.712Z"}},{"type":"Public","name":"ivar","owner":"andersen-lab","isFork":true,"description":"iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.","allTopics":["variant-calling","amplicon-sequencing"],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":9,"issueCount":42,"starsCount":115,"forksCount":41,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-21T21:52:53.647Z"}},{"type":"Public","name":"SARS-CoV-2_WasteWater_San-Diego","owner":"andersen-lab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":12,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-20T22:55:39.449Z"}},{"type":"Public","name":"HCoV-19-Genomics","owner":"andersen-lab","isFork":false,"description":"SARS-CoV-2 genomics","allTopics":["genomics","hcov-19"],"primaryLanguage":null,"pullRequestCount":0,"issueCount":2,"starsCount":14,"forksCount":4,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-12T23:33:17.859Z"}},{"type":"Public","name":"SARS-CoV-2_SGTF_San-Diego","owner":"andersen-lab","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-26T16:55:36.929Z"}},{"type":"Public","name":"MPXV_zoonotic_transmission_West_Africa","owner":"andersen-lab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-19T16:16:15.665Z"}},{"type":"Public","name":"hMPXV-1_Nigeria","owner":"andersen-lab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-19T16:15:33.551Z"}},{"type":"Public","name":"emails_mcneil","owner":"andersen-lab","isFork":false,"description":"Emails between Dr. Kristian Andersen and Mr. Donald McNeil","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-12T00:29:29.080Z"}},{"type":"Public","name":"MPX_WasteWater_San-Diego","owner":"andersen-lab","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-07T14:00:59.409Z"}},{"type":"Public","name":"bjorn_utils","owner":"andersen-lab","isFork":false,"description":"Key utils for sequence processing moved to a new home from bjorn","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":13,"starsCount":0,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-23T01:17:47.102Z"}},{"type":"Public","name":"project_2023_SARS-CoV-2_Connectivity","owner":"andersen-lab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-04T16:38:06.930Z"}},{"type":"Public","name":"Cryptic-Variants","owner":"andersen-lab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":1,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-06T16:30:42.008Z"}},{"type":"Public","name":"SARS-CoV-1_Evolution","owner":"andersen-lab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-10-26T23:19:33.831Z"}},{"type":"Public","name":"SARS-CoV-2_Evolution","owner":"andersen-lab","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":1,"issueCount":0,"starsCount":3,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-10-23T03:07:04.621Z"}},{"type":"Public","name":"paper_2022_jordan-sars2-phylogenetics","owner":"andersen-lab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-08-04T10:53:06.817Z"}},{"type":"Public","name":"SARS2_tianyancha_screenshots","owner":"andersen-lab","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-07-02T20:46:21.252Z"}},{"type":"Public","name":"outbreak.info","owner":"andersen-lab","isFork":true,"description":"During outbreaks of emerging diseases such as COVID-19, efficiently collecting, sharing, and integrating data is critical to scientific research. outbreak.info is a resource to aggregate all this information into a single location.","allTopics":[],"primaryLanguage":{"name":"Vue","color":"#41b883"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":13,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-03-10T20:26:11.221Z"}},{"type":"Public","name":"SARS2_doc_article_translations","owner":"andersen-lab","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-02-26T02:13:32.038Z"}},{"type":"Public","name":"paper_2022_zika-functional-evolution","owner":"andersen-lab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-01-24T22:09:58.612Z"}},{"type":"Public","name":"outbreak.api","owner":"andersen-lab","isFork":true,"description":"The data API server for outbreak.info","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":9,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-09-22T02:12:38.301Z"}},{"type":"Public","name":"paper_2020_new-orleans-hcov-genomics","owner":"andersen-lab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-07-15T03:28:05.786Z"}},{"type":"Public","name":"ebola-drc-epidemiology","owner":"andersen-lab","isFork":false,"description":"Repo for epidemiological data for the ongoing Ebola outbreak in the DRC","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-06-30T22:16:17.555Z"}},{"type":"Public","name":"west-nile-genomics-wnv4k","owner":"andersen-lab","isFork":false,"description":"West Nile virus genomic data produced as part of the WestNile 4K Project","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-06-15T20:48:13.317Z"}},{"type":"Public","name":"NHP-survival-analysis","owner":"andersen-lab","isFork":true,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-05-24T22:50:39.691Z"}},{"type":"Public","name":"HCoV-19-Genomics-Nextstrain","owner":"andersen-lab","isFork":false,"description":"Repo for local NextStrain build","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":1,"starsCount":1,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-04-23T00:22:32.674Z"}}],"repositoryCount":50,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"andersen-lab repositories"}