{"payload":{"pageCount":5,"repositories":[{"type":"Public","name":"CustomModules","owner":"UMCUGenetics","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":2,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-06T14:50:57.858Z"}},{"type":"Public","name":"DIMS","owner":"UMCUGenetics","isFork":false,"description":"Direct Infusion Mass Spectrometry pipeline","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":11,"starsCount":2,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-06T14:17:11.866Z"}},{"type":"Public","name":"Dx_resources","owner":"UMCUGenetics","isFork":false,"description":"Resources used in diagnostics pipelines","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":15,"starsCount":3,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-06T13:39:37.487Z"}},{"type":"Public","name":"rnaseq-voila","owner":"UMCUGenetics","isFork":true,"description":"Jupyter Notebook / Voila App for analysis and filtering of RNA-Seq data for clinical genetics diagnostics","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-04T13:46:23.708Z"}},{"type":"Public","name":"NanoRCS","owner":"UMCUGenetics","isFork":false,"description":"NanoRCS: Multimodal genome-wide cfDNA sequencing and analysis","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-30T13:36:56.050Z"}},{"type":"Public","name":"clarity_epp","owner":"UMCUGenetics","isFork":false,"description":"Clarity LIMS epp scripts","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-30T12:37:08.923Z"}},{"type":"Public","name":"DxNextflowRNA","owner":"UMCUGenetics","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":3,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-29T11:46:47.957Z"}},{"type":"Public","name":"DxNextflowWES","owner":"UMCUGenetics","isFork":false,"description":"Genome Diagnostics Nextflow WES workflow","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":6,"starsCount":6,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-28T13:01:32.907Z"}},{"type":"Public","name":"NextflowModules","owner":"UMCUGenetics","isFork":false,"description":"UMCU Genetics Nextflow modules","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":3,"issueCount":0,"starsCount":25,"forksCount":10,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-26T18:02:49.818Z"}},{"type":"Public","name":"mutSigExtractor","owner":"UMCUGenetics","isFork":false,"description":"An R package for extracting mutational signatures from vcf files","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":4,"starsCount":9,"forksCount":6,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-26T08:11:16.990Z"}},{"type":"Public","name":"ExonCov","owner":"UMCUGenetics","isFork":false,"description":"ExonCov: Exon coverage statistics from BAM files","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":3,"issueCount":4,"starsCount":4,"forksCount":3,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-19T09:16:11.366Z"}},{"type":"Public","name":"GIABEval","owner":"UMCUGenetics","isFork":false,"description":"Genome-in-a-bottle evaluation tool to determine statistics","allTopics":[],"primaryLanguage":null,"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-09T13:30:19.076Z"}},{"type":"Public","name":"Epi2Me_wf-human-variation","owner":"UMCUGenetics","isFork":true,"description":"","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":42,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-06T12:02:32.027Z"}},{"type":"Public","name":"USEQ_tools","owner":"UMCUGenetics","isFork":false,"description":"Utility scripts to work with Genologics Clarity LIMS","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":0,"starsCount":2,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-17T08:59:04.720Z"}},{"type":"Public","name":"ManuscriptSMNGeneConversion","owner":"UMCUGenetics","isFork":false,"description":"Scripts and files related to the SMN gene conversion manuscript","allTopics":[],"primaryLanguage":null,"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-12T13:14:28.008Z"}},{"type":"Public","name":"HapSMA","owner":"UMCUGenetics","isFork":false,"description":"Nextflow Oxford Nanopore Technologies workflow for SMA dataprocessing","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-10T08:01:56.380Z"}},{"type":"Public","name":"alissa_interpret_client","owner":"UMCUGenetics","isFork":false,"description":"Alissa Interpret Public API Client","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-02T14:40:07.677Z"}},{"type":"Public","name":"clarity_portal","owner":"UMCUGenetics","isFork":false,"description":"Clarity LIMS portal app ","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-02T11:48:14.647Z"}},{"type":"Public","name":"DIMSpect_GUI","owner":"UMCUGenetics","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-01T19:38:00.855Z"}},{"type":"Public","name":"franklin_client","owner":"UMCUGenetics","isFork":false,"description":"Python package for Franklin API","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-21T12:28:27.804Z"}},{"type":"Public","name":"DIMSdb","owner":"UMCUGenetics","isFork":false,"description":"database for Direct Infusion Mass Spectrometry pipeline ","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-11T13:39:09.653Z"}},{"type":"Public","name":"DxNextflowWGS","owner":"UMCUGenetics","isFork":false,"description":"Genome Diagnostics Nextflow WGS workflow","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":2,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-11T10:55:27.435Z"}},{"type":"Public","name":"VUSualizer","owner":"UMCUGenetics","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":2,"issueCount":4,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-10T14:28:01.185Z"}},{"type":"Public","name":"vip","owner":"UMCUGenetics","isFork":true,"description":"Variant Interpretation Pipeline","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":2,"issueCount":0,"starsCount":0,"forksCount":5,"license":"GNU Lesser General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-06T13:15:02.477Z"}},{"type":"Public","name":"nf-core_template","owner":"UMCUGenetics","isFork":false,"description":"Minimal nf-core compatible workflow template.","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-05T06:15:16.129Z"}},{"type":"Public","name":"AdvancedBioinformaticsCourse","owner":"UMCUGenetics","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":0,"license":"Creative Commons Zero v1.0 Universal","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-07T20:03:57.747Z"}},{"type":"Public","name":"Dx_tracks","owner":"UMCUGenetics","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Verilog","color":"#b2b7f8"},"pullRequestCount":0,"issueCount":1,"starsCount":2,"forksCount":0,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-02T05:55:08.111Z"}},{"type":"Public","name":"rsync_to_rdisc","owner":"UMCUGenetics","isFork":false,"description":"Daemon to rsync data from HPC to bgarray","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-26T15:36:55.678Z"}},{"type":"Public","name":"DxNextflowFP","owner":"UMCUGenetics","isFork":false,"description":"Repo with scripts to process fingerprint data.","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-08T08:54:30.629Z"}},{"type":"Public","name":"ONCODE_MC","owner":"UMCUGenetics","isFork":false,"description":"Course materials for Oncode Masterclass: Introduction to machine learning in cancer genomics on the 18th November 2020 by Jeroen de Ridder's group (UMC Utrecht) in collaboration with Lodewyk Wessel and Soufiane Mourragui (NKI).","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":2,"issueCount":0,"starsCount":1,"forksCount":3,"license":"Creative Commons Zero v1.0 Universal","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-01T21:01:44.666Z"}}],"repositoryCount":144,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"UMCUGenetics repositories"}