{"payload":{"pageCount":1,"repositories":[{"type":"Public","name":"varvis-download","owner":"LaborBerlin","isFork":false,"description":"A CLI tool to download genomic analysis files from the Varvis API. Supports authentication, file type selection, proxy settings, and destination directory specification.","allTopics":["api","cli","node","bioinformatics","authentication","genomics","proxy-support","data-download","varvis"],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":0,"issueCount":3,"starsCount":1,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-11T20:24:38.696Z"}},{"type":"Public","name":"hum-exomiser-fork","owner":"LaborBerlin","isFork":true,"description":"A Tool to Annotate and Prioritize Exome Variants","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":54,"license":"GNU Affero General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-05T12:52:32.869Z"}},{"type":"Public","name":"hum-ngs-vntyper","owner":"LaborBerlin","isFork":true,"description":"A tool to genotype MUC1 coding VNTR in ADTKD","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-31T09:14:39.383Z"}},{"type":"Public","name":"LB-tbdb","owner":"LaborBerlin","isFork":true,"description":"Standard database for the TBProfiler tool","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":18,"license":"GNU Lesser General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-13T11:07:42.399Z"}},{"type":"Public","name":"ont-assembly-snake","owner":"LaborBerlin","isFork":false,"description":"Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":18,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-23T09:51:49.320Z"}},{"type":"Public","name":"score-assemblies","owner":"LaborBerlin","isFork":false,"description":"Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).","allTopics":["bioinformatics","genome-analysis","genome-assembly","nanopore-sequencing","snakemake-pipeline","bacterial-genome-analysis","nanopore-assembly"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":24,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-05T14:10:06.450Z"}},{"type":"Public","name":"hum-cubi-tk-fork","owner":"LaborBerlin","isFork":true,"description":"CUBI Tooling for SODAR, VarFish et al.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":6,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-20T17:26:28.802Z"}},{"type":"Public","name":"hum-varfish-annotator-fork","owner":"LaborBerlin","isFork":true,"description":"Annotate variants for import into VarFish server.","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":3,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-01T12:07:59.868Z"}},{"type":"Public","name":"hum-varfish-docker-compose-fork","owner":"LaborBerlin","isFork":true,"description":"Setup VarFish as using Docker Compose","allTopics":[],"primaryLanguage":{"name":"Makefile","color":"#427819"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":3,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-01T12:07:49.903Z"}},{"type":"Public","name":"hum-varfish-server-fork","owner":"LaborBerlin","isFork":true,"description":"VarFish: comprehensive DNA variant analysis for diagnostics and research","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":11,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-01T12:07:21.677Z"}},{"type":"Public","name":"hum-varfish-db-downloader-fork","owner":"LaborBerlin","isFork":true,"description":"Download public/static databases for VarFish","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":3,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-01T12:06:17.123Z"}},{"type":"Public","name":"hum-varfish-cli-fork","owner":"LaborBerlin","isFork":true,"description":"VarFish REST API client (CLI + Python package)","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":3,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-01T12:05:46.358Z"}},{"type":"Public","name":"MultiQC","owner":"LaborBerlin","isFork":true,"description":"Aggregate results from bioinformatics analyses across many samples into a single report.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":1,"forksCount":595,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-26T10:13:53.404Z"}},{"type":"Public","name":"chatgpt-mattermost-bot","owner":"LaborBerlin","isFork":true,"description":"A very simple implementation of a service for a mattermost bot that uses ChatGPT in the backend.","allTopics":[],"primaryLanguage":{"name":"TypeScript","color":"#3178c6"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":50,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-26T09:29:09.349Z"}},{"type":"Public","name":"hum-gene-ranking-shootout","owner":"LaborBerlin","isFork":true,"description":"A small benchmark for comparing gene ranking methods","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-05-11T12:30:06.105Z"}},{"type":"Public","name":"bioconda-recipes","owner":"LaborBerlin","isFork":true,"description":"Conda recipes for the bioconda channel.","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":3205,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-05T11:21:29.969Z"}},{"type":"Public","name":"MultiQC_TestData","owner":"LaborBerlin","isFork":true,"description":"Test data for MultiQC. See https://github.com/ewels/MultiQC","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":142,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-15T15:07:01.100Z"}},{"type":"Public","name":"scramble","owner":"LaborBerlin","isFork":true,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":12,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-04-05T13:07:42.788Z"}},{"type":"Public","name":"LB-ncov2019-artic-nf","owner":"LaborBerlin","isFork":true,"description":"A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019 ","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":89,"license":"GNU Affero General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-03-14T08:53:15.445Z"}},{"type":"Public","name":"TBProfiler","owner":"LaborBerlin","isFork":true,"description":"Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":43,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-11-24T20:22:56.479Z"}}],"repositoryCount":20,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"LaborBerlin repositories"}