{"payload":{"pageCount":2,"repositories":[{"type":"Public","name":"ionBench","owner":"CardiacModelling","isFork":false,"description":"A benchmarking tool for comparing different parameter optimization algorithms for ion channel models","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":1,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-23T17:27:00.057Z"}},{"type":"Public","name":"syncropatch_export","owner":"CardiacModelling","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":5,"starsCount":1,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-22T10:52:42.708Z"}},{"type":"Public","name":"binding_model_OED","owner":"CardiacModelling","isFork":false,"description":"Code for optimal experimental design paper ","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,4],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-20T09:58:07.944Z"}},{"type":"Public","name":"protocol-design-hERG","owner":"CardiacModelling","isFork":false,"description":"Voltage clamp protocol design for hERG.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6,1],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-19T14:40:09.654Z"}},{"type":"Public","name":"multiprotocol_data_fitting","owner":"CardiacModelling","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-18T22:31:06.671Z"}},{"type":"Public","name":"pcpostprocess","owner":"CardiacModelling","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":4,"issueCount":17,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-25T12:13:31.124Z"}},{"type":"Public","name":"BenNevis","owner":"CardiacModelling","isFork":false,"description":"\"Where is Ben Nevis\" presents the landscape of Great Britain as a testbed for optimisation and sampling methods.","allTopics":["numerical-optimization"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":5,"starsCount":2,"forksCount":1,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-20T12:51:52.345Z"}},{"type":"Public","name":"empirical_quantification_of_model_discrepancy","owner":"CardiacModelling","isFork":true,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":3,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-14T08:09:27.521Z"}},{"type":"Public","name":"model-reduction-manifold-boundaries","owner":"CardiacModelling","isFork":false,"description":"Code for model reduction using manifold boundaries","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":4,"starsCount":0,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-23T16:08:19.239Z"}},{"type":"Public","name":"MarkovModels","owner":"CardiacModelling","isFork":true,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":3,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-08T04:44:21.884Z"}},{"type":"Public","name":"hERG-binding-mechanisms","owner":"CardiacModelling","isFork":false,"description":"Source code and data for reproducing \"The impact of uncertainty in hERG binding mechanism on in silico predictions of drug-induced proarrhythmic risk\".","allTopics":["uncertainty","herg","in-silico","drug-induced-arrhythmias","drug-binding"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":3,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-25T08:54:09.299Z"}},{"type":"Public","name":"hERGRapidCharacterisation","owner":"CardiacModelling","isFork":false,"description":"Rapid characterisation of hERG channel kinetics","allTopics":["modeling","electrophysiology","high-throughput","herg","patch-clamp","voltage-clamp","ion-channels","temperature-dependence","herg-channel-kinetics"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":4,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-08T05:15:24.008Z"}},{"type":"Public","name":"markov-builder","owner":"CardiacModelling","isFork":false,"description":"Tool for building and manipulating Markov models of ion-channel kinetics","allTopics":["markov-model","herg","herg-channel-kinetics","python"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":5,"forksCount":2,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-08T14:12:02.894Z"}},{"type":"Public","name":"Gamma_0","owner":"CardiacModelling","isFork":false,"description":"Code associated with a publication on the action potential model parameter representing missing charge","allTopics":["action-potential","cardiac-electrophysiology","cardiac-modelling"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":1,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-02T13:10:41.329Z"}},{"type":"Public","name":"AtrialLowK","owner":"CardiacModelling","isFork":false,"description":"Effect on low external K on atrial myocytes via IK1 and INaK","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-02T13:10:40.298Z"}},{"type":"Public","name":"ical-model-review","owner":"CardiacModelling","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-02T11:09:48.431Z"}},{"type":"Public","name":"WIRES","owner":"CardiacModelling","isFork":false,"description":"Figures and code for examples in WIREs review on calibrating electrophysiology models","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-02T11:08:00.301Z"}},{"type":"Public","name":"RapidCharacterisationProtocols","owner":"CardiacModelling","isFork":false,"description":"Collection of experimental protocols in common patch clamp formats for rapid characterisation of ion channels","allTopics":["electrophysiology","herg","patch-clamp","voltage-clamp","ion-channels","ion-channel-kinetics"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-02T10:17:06.442Z"}},{"type":"Public","name":"action-potential-experimental-design","owner":"CardiacModelling","isFork":false,"description":"Experimental design for calibrating action potential models.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-07-07T09:56:20.682Z"}},{"type":"Public","name":"VoltageClampModel","owner":"CardiacModelling","isFork":false,"description":"Code to add a mathematical model of voltage-clamp artefacts to your ion channel simulations","allTopics":["modeling","electrophysiology","high-throughput","artefacts","herg","patch-clamp","voltage-clamp","variability","ion-channel-kinetics"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-31T09:41:36.375Z"}},{"type":"Public","name":"nonlinear-time-dependent-leak","owner":"CardiacModelling","isFork":false,"description":"Data and code for reproducing the results in the nonlinear time-dependent leak paper.","allTopics":["high-throughput","patch-clamp","voltage-clamp","calcium-fluoride"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-05-10T07:45:13.833Z"}},{"type":"Public","name":"glycan-counter","owner":"CardiacModelling","isFork":false,"description":"Scripts for counting glycans in images","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-05-05T19:57:38.926Z"}},{"type":"Public","name":"fickleheart-method-tutorials","owner":"CardiacModelling","isFork":false,"description":"Code for the tutorials in the Fickle Heart model calibration with discrepancy 2020 paper.","allTopics":["calibration","electrophysiology","bayesian-inference","uncertainty-quantification","gaussian-processes","autoregressive-moving-average","model-discrepancy"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":1,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-02-15T02:31:24.099Z"}},{"type":"Public","name":"hergModels","owner":"CardiacModelling","isFork":true,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-12-05T09:53:11.662Z"}},{"type":"Public","name":"PyHillFit","owner":"CardiacModelling","isFork":true,"description":"Code to load and fit dose response curves in a Bayesian inference framework","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":3,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-11-14T02:35:49.344Z"}},{"type":"Public","name":"VoltageClampAPI","owner":"CardiacModelling","isFork":false,"description":"A python web api for the artefacts app","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":1,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-10-20T02:23:01.599Z"}},{"type":"Public","name":"fitting-with-derivatives-cinc","owner":"CardiacModelling","isFork":false,"description":"Code for the CINC paper \"Derivative-based Inference for Cell and Channel Electrophysiology Models\"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-09-13T13:04:29.291Z"}},{"type":"Public","name":"R56Q-modelling","owner":"CardiacModelling","isFork":false,"description":"A repository to reproduce modelling results for the R56Q-hERG project","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-12-16T15:10:11.501Z"}},{"type":"Public","name":"relative-contributions","owner":"CardiacModelling","isFork":false,"description":"Relative contributions of transmembrane currents in human AP models","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":2,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-11-25T17:48:34.502Z"}},{"type":"Public","name":"FourWaysOfFitting","owner":"CardiacModelling","isFork":false,"description":"Code to compare four different ways to fit an ion current model","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":4,"forksCount":3,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-10-26T12:37:29.607Z"}}],"repositoryCount":32,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"CardiacModelling repositories"}