{"payload":{"pageCount":3,"repositories":[{"type":"Public","name":"pantas","owner":"AlgoLab","isFork":false,"description":"Differential quantification of alternative splicing events on spliced pangenome graphs","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":5,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-11T09:34:54.458Z"}},{"type":"Public","name":"pangeblocks","owner":"AlgoLab","isFork":false,"description":"pangenome from maximal blocks in an MSA","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":1,"issueCount":1,"starsCount":3,"forksCount":1,"license":"GNU General Public License v3.0","participation":[0,0,0,1,6,14,5,3,0,0,0,0,0,12,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,2,0,1,2,3,2,0,0,0,0,0,0,0,0,0,0,0,1],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-10T09:19:24.804Z"}},{"type":"Public","name":"cpm2025","owner":"AlgoLab","isFork":false,"description":"Combinatorial Pattern Matching 2025","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"GNU General Public License v2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-08T12:43:21.714Z"}},{"type":"Public","name":"RecGraph-exps","owner":"AlgoLab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,1,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-17T20:58:28.455Z"}},{"type":"Public","name":"RecGraph","owner":"AlgoLab","isFork":false,"description":"Optimal sequence-to-graph alignment with recombinations","allTopics":["alignment","poa","pangenomics","rust"],"primaryLanguage":{"name":"Rust","color":"#dea584"},"pullRequestCount":0,"issueCount":3,"starsCount":23,"forksCount":2,"license":"MIT License","participation":[0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-11T14:34:04.148Z"}},{"type":"Public","name":"complexCGR","owner":"AlgoLab","isFork":false,"description":"complex Chaos Game Representation for DNA sequences","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":14,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-26T10:29:49.629Z"}},{"type":"Public","name":"COPA24","owner":"AlgoLab","isFork":true,"description":"PhD school on Evolution in Computational Pangenomics","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":59,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-14T09:57:05.957Z"}},{"type":"Public","name":"materiale-stage-tesi","owner":"AlgoLab","isFork":false,"description":"Una raccolta di materiale utile per tutti gli studenti che iniziano a lavorare","allTopics":[],"primaryLanguage":{"name":"Rust","color":"#dea584"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Creative Commons Zero v1.0 Universal","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-31T10:00:48.498Z"}},{"type":"Public","name":"rs-gax","owner":"AlgoLab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Rust","color":"#dea584"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-02T11:22:44.793Z"}},{"type":"Public","name":"ESGq","owner":"AlgoLab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-07-01T13:25:11.624Z"}},{"type":"Public","name":"meta_cancer","owner":"AlgoLab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-06-27T10:19:08.452Z"}},{"type":"Public","name":"LightStringGraph","owner":"AlgoLab","isFork":false,"description":"Lightweight String Graph Construction","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":0,"starsCount":10,"forksCount":1,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-05-10T16:05:04.554Z"}},{"type":"Public","name":"pangeblocks-experiments","owner":"AlgoLab","isFork":false,"description":"Experiments to evaluate graph constructions made with pangeblocks and other tools","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-04T21:53:10.203Z"}},{"type":"Public","name":"Wild-pBWT","owner":"AlgoLab","isFork":true,"description":"PBWT-based algorithm for identifying all Maximal Perfect Haplotype Blocks with Wildcards","allTopics":["haplotypes","bwt","haplotype-blocks","pbwt"],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-03T14:19:09.378Z"}},{"type":"Public","name":"malva","owner":"AlgoLab","isFork":false,"description":"genotyping by Mapping-free ALternate-allele detection of known VAriants","allTopics":["bioinformatics","ngs","vcf","alignment-free","genotyping"],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":3,"starsCount":10,"forksCount":4,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-06T09:14:14.800Z"}},{"type":"Public","name":"pygfa","owner":"AlgoLab","isFork":false,"description":"A library to manage GFA files","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":3,"starsCount":7,"forksCount":3,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-01T18:12:50.825Z"}},{"type":"Public","name":"cancer_ea","owner":"AlgoLab","isFork":false,"description":"cancer phylogeny genetic programming","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-02-08T10:19:05.303Z"}},{"type":"Public","name":"deap","owner":"AlgoLab","isFork":true,"description":"Distributed Evolutionary Algorithms in Python","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":1120,"license":"GNU Lesser General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-02-08T08:37:17.290Z"}},{"type":"Public","name":"galig","owner":"AlgoLab","isFork":false,"description":"A graph aligner","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":8,"starsCount":24,"forksCount":12,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-12-15T15:12:46.527Z"}},{"type":"Public","name":"MALVIRUS","owner":"AlgoLab","isFork":false,"description":"A fast and accurate tool for genotyping haploid individuals (such as SARS-CoV-2)","allTopics":["kmer","alignment-free","virology","genotyping-by-sequencing","genotyping","sars-cov-2"],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":2,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-12-13T22:19:37.735Z"}},{"type":"Public","name":"CouGaR-g","owner":"AlgoLab","isFork":false,"description":"Frequence Chaos Game Representation of DNA with Deep Learning","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":4,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-09-25T20:03:06.177Z"}},{"type":"Public","name":"rs-vgaligner","owner":"AlgoLab","isFork":false,"description":"Rust implementation of ekg's dozyg","allTopics":["bioinformatics","anchors","alignment","kmer","poa","chaining","rust"],"primaryLanguage":{"name":"Rust","color":"#dea584"},"pullRequestCount":0,"issueCount":0,"starsCount":9,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-06-27T15:06:25.547Z"}},{"type":"Public","name":"Rearrangement-Distances","owner":"AlgoLab","isFork":false,"description":"Rearrangement Distances journal paper","allTopics":[],"primaryLanguage":{"name":"TeX","color":"#3D6117"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-04-19T12:34:24.545Z"}},{"type":"Public","name":"MALVIRUS-data","owner":"AlgoLab","isFork":false,"description":"Datasets accompanying MALVIRUS ","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-03-28T06:03:49.943Z"}},{"type":"Public","name":"persistent-phylogeny","owner":"AlgoLab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-02-22T17:52:03.557Z"}},{"type":"Public","name":"supervised-dna","owner":"AlgoLab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-02-22T16:02:23.564Z"}},{"type":"Public","name":"kfinger","owner":"AlgoLab","isFork":false,"description":"A pipeline for computing overlaps between long reads based on theoretical properties of Lyndon factorizations.","allTopics":["overlap","pacbio","lyndon-factors"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-01-31T21:34:36.447Z"}},{"type":"Public","name":"MALVIRUS-repro","owner":"AlgoLab","isFork":false,"description":"Reproducibility of MALVIRUS experiments","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-10-08T09:34:07.646Z"}},{"type":"Public","name":"celluloid","owner":"AlgoLab","isFork":false,"description":"Celluloid: clustering single cell sequencing data around centroids","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-06-13T21:14:47.885Z"}},{"type":"Public","name":"shark","owner":"AlgoLab","isFork":false,"description":"Mapping-free software for fishing relevant reads in an RNA-Seq sample","allTopics":["bioinformatics","rna-seq","filtering","alignment-free"],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":0,"starsCount":18,"forksCount":1,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-12-09T10:38:39.435Z"}}],"repositoryCount":67,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"AlgoLab repositories"}