{"payload":{"pageCount":1,"repositories":[{"type":"Public","name":"limbus","owner":"AberystwythSystemsBiology","isFork":false,"description":"LImBuS is an open source, standards compliant Biobank Information Management System developed by researchers from Aberystwyth University.","allTopics":["lims","biobank","biospecimen","biobanking"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":5,"issueCount":5,"starsCount":29,"forksCount":4,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-24T11:13:04.282Z"}},{"type":"Public","name":"limbus-qrtk","owner":"AberystwythSystemsBiology","isFork":false,"description":"An extremely simplistic QR/DataMatrix/Barcode toolkit for the LImBuS project.","allTopics":["barcode","datamatrix"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":3,"issueCount":0,"starsCount":5,"forksCount":1,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-03T23:44:34.124Z"}},{"type":"Public","name":"pyISOPACh","owner":"AberystwythSystemsBiology","isFork":false,"description":"A \"fairly fast\" ISOtope PAttern Calculator for Python","allTopics":["python","generator","cheminformatics","pattern","isotopic"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":9,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-27T22:57:59.812Z"}},{"type":"Public","name":"matilda","owner":"AberystwythSystemsBiology","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Clojure","color":"#db5855"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-01-18T21:46:44.718Z"}},{"type":"Public","name":"D-cOG","owner":"AberystwythSystemsBiology","isFork":false,"description":"cOG Annotation of protein sequences using deep learning","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":8,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-12-08T03:54:06.338Z"}},{"type":"Public","name":"dimedbpy","owner":"AberystwythSystemsBiology","isFork":false,"description":"Python wrapper for the DIMEdb REST API. ","allTopics":["bioinformatics","metabolomics","chemical-elements","chemical-formulas","metabolic-models","python"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":0,"starsCount":5,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-06-22T02:39:58.164Z"}},{"type":"Public","name":"dimedb-lts","owner":"AberystwythSystemsBiology","isFork":false,"description":"Long Term Support version of the DIMEdb Metabolite identification web service.","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-06-09T11:21:33.640Z"}},{"type":"Public","name":"SCTTSRApy","owner":"AberystwythSystemsBiology","isFork":false,"description":"A Python Interface to the SNOMED CT Snowstorm API","allTopics":["python","snomed","snomed-ct","snowstorm"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":2,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-04-25T08:29:22.705Z"}},{"type":"Public","name":"MEDIALpy","owner":"AberystwythSystemsBiology","isFork":false,"description":"A small python package that allows the user to look up common medical abbreviations.","allTopics":["medicine","glossary","terminology","medical-information","medical-abbreviations","medical-terminology","medical-glossary"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":12,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-04-19T12:05:43.559Z"}},{"type":"Public","name":"CLICOSTA","owner":"AberystwythSystemsBiology","isFork":false,"description":"National Clinical Coding Standardiser","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-03-29T12:53:40.018Z"}},{"type":"Public","name":"sog","owner":"AberystwythSystemsBiology","isFork":false,"description":"Simple Ontology Grep - A REST service for searching near-matches in ontology labels","allTopics":[],"primaryLanguage":{"name":"Clojure","color":"#db5855"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"Eclipse Public License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-03-28T18:57:16.824Z"}},{"type":"Public","name":"DIMEdb","owner":"AberystwythSystemsBiology","isFork":false,"description":"DIMEdb: Metabolite identification web service.","allTopics":["bioinformatics","metabolomics"],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":1,"starsCount":3,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-03-14T10:36:58.572Z"}},{"type":"Public","name":"pyMEAN","owner":"AberystwythSystemsBiology","isFork":false,"description":"A Python package for metabolite enrichment analysis.","allTopics":["metabolomics","integrative-analysis","pathway-enrichment-analysis","metabolomics-pipeline"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":2,"starsCount":8,"forksCount":2,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-03-11T13:37:05.415Z"}},{"type":"Public","name":"icd10-cm-ng","owner":"AberystwythSystemsBiology","isFork":true,"description":"ICD-10 CM medical classification list by the World Health Organization","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":27,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-02-01T11:38:33.873Z"}},{"type":"Public","name":"MIMIC-III-to-SNOMED","owner":"AberystwythSystemsBiology","isFork":true,"description":"Preprocessed SNOMED relations files that connect drugs and diagnoses from MIMIC-III to SNOMED. Fork of cscihkbu/Snomed-Proprocessed.","allTopics":["snomed","icd-10","mimic-iii","icd-9","icd"],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-01-27T13:57:41.526Z"}},{"type":"Public archive","name":"DIMEpy","owner":"AberystwythSystemsBiology","isFork":false,"description":"Python package for the high-throughput nontargeted metabolite fingerprinting of nominal mass direct injection mass spectrometry directly from mzML files.","allTopics":["statistics","metabolomics","python","direct-infusion-metablomics"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":3,"starsCount":9,"forksCount":3,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-11-10T11:50:26.568Z"}},{"type":"Public","name":"n2c22018t12sql","owner":"AberystwythSystemsBiology","isFork":true,"description":"Tool for importing n2c2 2018 Track 1 \"Cohort Selection for Clinical Trials\" data into SQL","allTopics":[],"primaryLanguage":{"name":"Clojure","color":"#db5855"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-11-08T14:35:23.555Z"}},{"type":"Public","name":"ann2sql","owner":"AberystwythSystemsBiology","isFork":true,"description":"Script to iterate over rows in a SQL database, annotate with MedCATservice, and store in a destination database.","allTopics":[],"primaryLanguage":{"name":"Clojure","color":"#db5855"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-11-08T12:23:15.579Z"}},{"type":"Public","name":"icd9-to-snomedct","owner":"AberystwythSystemsBiology","isFork":false,"description":"Shell script to create TTL file of annotations to augment an existing ICD9 triple graph to point to SNOMEDCT concepts.","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-10-15T16:10:32.288Z"}},{"type":"Public","name":"limbus-ova","owner":"AberystwythSystemsBiology","isFork":false,"description":"Repostiory Containing the Open Virtualisation Appliance for various releases of LImBuS","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-01-28T13:39:26.388Z"}},{"type":"Public","name":"deep-annot","owner":"AberystwythSystemsBiology","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-04-04T06:29:52.124Z"}},{"type":"Public","name":"deepseq2vec-repo","owner":"AberystwythSystemsBiology","isFork":false,"description":"Repositories for the DeepSeq2Vec web portal","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-09-13T15:59:57.065Z"}}],"repositoryCount":22,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"AberystwythSystemsBiology repositories"}