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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method(print,Analysis)
S3method(print,MassSpecAnalysis)
S3method(print,ProcessingSettings)
S3method(print,ProjectHeaders)
S3method(print,RamanAnalysis)
S3method(print,StatisticAnalysis)
S3method(validate,Analysis)
S3method(validate,MassSpecAnalysis)
S3method(validate,MassSpecSettings_AnnotateFeatures_StreamFind)
S3method(validate,MassSpecSettings_AverageSpectra_StreamFind)
S3method(validate,MassSpecSettings_BinSpectra_StreamFind)
S3method(validate,MassSpecSettings_CalculateQuality_StreamFind)
S3method(validate,MassSpecSettings_CalculateSpectraCharges_StreamFind)
S3method(validate,MassSpecSettings_CentroidSpectra_qCentroids)
S3method(validate,MassSpecSettings_ClusterSpectra_StreamFind)
S3method(validate,MassSpecSettings_CorrectChromatogramsBaseline_airpls)
S3method(validate,MassSpecSettings_CorrectChromatogramsBaseline_baseline)
S3method(validate,MassSpecSettings_CorrectSpectraBaseline_airpls)
S3method(validate,MassSpecSettings_CorrectSpectraBaseline_baseline)
S3method(validate,MassSpecSettings_DeconvoluteSpectra_StreamFind)
S3method(validate,MassSpecSettings_FillFeatures_StreamFind)
S3method(validate,MassSpecSettings_FilterFeatures_StreamFind)
S3method(validate,MassSpecSettings_FilterFeatures_patRoon)
S3method(validate,MassSpecSettings_FindFeatures_kpic2)
S3method(validate,MassSpecSettings_FindFeatures_openms)
S3method(validate,MassSpecSettings_FindFeatures_qPeaks)
S3method(validate,MassSpecSettings_FindFeatures_xcms3_centwave)
S3method(validate,MassSpecSettings_FindFeatures_xcms3_matchedfilter)
S3method(validate,MassSpecSettings_FindInternalStandards_StreamFind)
S3method(validate,MassSpecSettings_GenerateCompounds_metfrag)
S3method(validate,MassSpecSettings_GenerateFormulas_genform)
S3method(validate,MassSpecSettings_GroupFeatures_openms)
S3method(validate,MassSpecSettings_GroupFeatures_xcms3_peakdensity)
S3method(validate,MassSpecSettings_GroupFeatures_xcms3_peakdensity_peakgroups)
S3method(validate,MassSpecSettings_IntegrateChromatograms_StreamFind)
S3method(validate,MassSpecSettings_LoadFeaturesEIC_StreamFind)
S3method(validate,MassSpecSettings_LoadFeaturesMS1_StreamFind)
S3method(validate,MassSpecSettings_LoadFeaturesMS2_StreamFind)
S3method(validate,MassSpecSettings_LoadMSPeakLists_StreamFind)
S3method(validate,MassSpecSettings_LoadMSPeakLists_patRoon)
S3method(validate,MassSpecSettings_NormalizeSpectra_blockweight)
S3method(validate,MassSpecSettings_NormalizeSpectra_meancenter)
S3method(validate,MassSpecSettings_NormalizeSpectra_minmax)
S3method(validate,MassSpecSettings_NormalizeSpectra_scale)
S3method(validate,MassSpecSettings_NormalizeSpectra_snv)
S3method(validate,MassSpecSettings_SmoothChromatograms_movingaverage)
S3method(validate,MassSpecSettings_SmoothChromatograms_savgol)
S3method(validate,MassSpecSettings_SmoothSpectra_movingaverage)
S3method(validate,MassSpecSettings_SmoothSpectra_savgol)
S3method(validate,MassSpecSettings_SubtractBlankSpectra_StreamFind)
S3method(validate,MassSpecSettings_SuspectScreening_StreamFind)
S3method(validate,MassSpecSettings_SuspectScreening_forident)
S3method(validate,MassSpecSettings_SuspectScreening_patRoon)
S3method(validate,ProcessingSettings)
S3method(validate,ProjectHeaders)
S3method(validate,RamanAnalysis)
S3method(validate,RamanSettings_AverageSpectra_StreamFind)
S3method(validate,RamanSettings_BinSpectra_StreamFind)
S3method(validate,RamanSettings_CorrectSpectraBaseline_airpls)
S3method(validate,RamanSettings_CorrectSpectraBaseline_baseline)
S3method(validate,RamanSettings_DeleteSpectraSection_StreamFind)
S3method(validate,RamanSettings_MergeSpectraTimeSeries_StreamFind)
S3method(validate,RamanSettings_NormalizeSpectra_blockweight)
S3method(validate,RamanSettings_NormalizeSpectra_meancenter)
S3method(validate,RamanSettings_NormalizeSpectra_minmax)
S3method(validate,RamanSettings_NormalizeSpectra_scale)
S3method(validate,RamanSettings_NormalizeSpectra_snv)
S3method(validate,RamanSettings_SmoothSpectra_movingaverage)
S3method(validate,RamanSettings_SmoothSpectra_savgol)
S3method(validate,RamanSettings_SubtractBlankSpectra_StreamFind)
S3method(validate,RamanSettings_SubtractSpectraSection_StreamFind)
S3method(validate,StatisticAnalysis)
S3method(validate,StatisticSettings_MakeModel_mcrals_mdatools)
S3method(validate,StatisticSettings_MakeModel_mcrpure_mdatools)
S3method(validate,StatisticSettings_MakeModel_pca_mdatools)
S3method(validate,StatisticSettings_PrepareClassification_knn)
S3method(validate,StatisticSettings_PrepareData_autoscale)
export("%>%")
export(Analysis)
export(CoreEngine)
export(MassSpecAnalysis)
export(MassSpecEngine)
export(MassSpecSettings_AnnotateFeatures_StreamFind)
export(MassSpecSettings_AverageSpectra_StreamFind)
export(MassSpecSettings_BinSpectra_StreamFind)
export(MassSpecSettings_CalculateQuality_StreamFind)
export(MassSpecSettings_CalculateSpectraCharges_StreamFind)
export(MassSpecSettings_CentroidSpectra_qCentroids)
export(MassSpecSettings_ClusterSpectra_StreamFind)
export(MassSpecSettings_CorrectChromatogramsBaseline_airpls)
export(MassSpecSettings_CorrectChromatogramsBaseline_baseline)
export(MassSpecSettings_CorrectSpectraBaseline_airpls)
export(MassSpecSettings_CorrectSpectraBaseline_baseline)
export(MassSpecSettings_DeconvoluteSpectra_StreamFind)
export(MassSpecSettings_FillFeatures_StreamFind)
export(MassSpecSettings_FilterFeatures_StreamFind)
export(MassSpecSettings_FilterFeatures_patRoon)
export(MassSpecSettings_FindFeatures_kpic2)
export(MassSpecSettings_FindFeatures_openms)
export(MassSpecSettings_FindFeatures_qPeaks)
export(MassSpecSettings_FindFeatures_xcms3_centwave)
export(MassSpecSettings_FindFeatures_xcms3_matchedfilter)
export(MassSpecSettings_FindInternalStandards_StreamFind)
export(MassSpecSettings_GenerateCompounds_metfrag)
export(MassSpecSettings_GenerateFormulas_genform)
export(MassSpecSettings_GroupFeatures_openms)
export(MassSpecSettings_GroupFeatures_xcms3_peakdensity)
export(MassSpecSettings_GroupFeatures_xcms3_peakdensity_peakgroups)
export(MassSpecSettings_IntegrateChromatograms_StreamFind)
export(MassSpecSettings_LoadFeaturesEIC_StreamFind)
export(MassSpecSettings_LoadFeaturesMS1_StreamFind)
export(MassSpecSettings_LoadFeaturesMS2_StreamFind)
export(MassSpecSettings_LoadMSPeakLists_StreamFind)
export(MassSpecSettings_LoadMSPeakLists_patRoon)
export(MassSpecSettings_NormalizeSpectra_blockweight)
export(MassSpecSettings_NormalizeSpectra_meancenter)
export(MassSpecSettings_NormalizeSpectra_minmax)
export(MassSpecSettings_NormalizeSpectra_scale)
export(MassSpecSettings_NormalizeSpectra_snv)
export(MassSpecSettings_SmoothChromatograms_movingaverage)
export(MassSpecSettings_SmoothChromatograms_savgol)
export(MassSpecSettings_SmoothSpectra_movingaverage)
export(MassSpecSettings_SmoothSpectra_savgol)
export(MassSpecSettings_SubtractBlankSpectra_StreamFind)
export(MassSpecSettings_SuspectScreening_StreamFind)
export(MassSpecSettings_SuspectScreening_forident)
export(MassSpecSettings_SuspectScreening_patRoon)
export(ProcessingSettings)
export(ProjectHeaders)
export(RamanAnalysis)
export(RamanEngine)
export(RamanSettings_AverageSpectra_StreamFind)
export(RamanSettings_BinSpectra_StreamFind)
export(RamanSettings_CorrectSpectraBaseline_airpls)
export(RamanSettings_CorrectSpectraBaseline_baseline)
export(RamanSettings_DeleteSpectraSection_StreamFind)
export(RamanSettings_MergeSpectraTimeSeries_StreamFind)
export(RamanSettings_NormalizeSpectra_blockweight)
export(RamanSettings_NormalizeSpectra_meancenter)
export(RamanSettings_NormalizeSpectra_minmax)
export(RamanSettings_NormalizeSpectra_scale)
export(RamanSettings_NormalizeSpectra_snv)
export(RamanSettings_SmoothSpectra_movingaverage)
export(RamanSettings_SmoothSpectra_savgol)
export(RamanSettings_SubtractBlankSpectra_StreamFind)
export(RamanSettings_SubtractSpectraSection_StreamFind)
export(StatisticAnalysis)
export(StatisticEngine)
export(StatisticSettings_MakeModel_mcrals_mdatools)
export(StatisticSettings_MakeModel_mcrpure_mdatools)
export(StatisticSettings_MakeModel_pca_mdatools)
export(StatisticSettings_PrepareClassification_knn)
export(StatisticSettings_PrepareData_autoscale)
export(clear_cache)
export(convert_ms_files)
export(get_default_ProcessingSettings)
export(import_MassSpecEngine)
export(make_ms_targets)
export(run_app)
export(save_default_ProcessingSettings)
export(trim_ms_files_spectra)
export(validate)
import(R6)
import(S7)
import(checkmate)
import(data.table)
import(zlibbioc)
importFrom(DBI,dbConnect)
importFrom(DBI,dbDisconnect)
importFrom(DBI,dbExecute)
importFrom(DBI,dbListTables)
importFrom(RColorBrewer,brewer.pal)
importFrom(RSQLite,SQLite)
importFrom(Rcpp,sourceCpp)
importFrom(Rdpack,reprompt)
importFrom(digest,digest)
importFrom(fst,compress_fst)
importFrom(golem,with_golem_options)
importFrom(grDevices,col2rgb)
importFrom(grDevices,colorRamp)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,rgb)
importFrom(graphics,axis)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,points)
importFrom(graphics,polygon)
importFrom(graphics,rect)
importFrom(graphics,text)
importFrom(jsonlite,fromJSON)
importFrom(jsonlite,toJSON)
importFrom(magrittr,"%>%")
importFrom(methods,"slot<-")
importFrom(methods,as)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,slot)
importFrom(methods,slotNames)
importFrom(plotly,add_annotations)
importFrom(plotly,add_lines)
importFrom(plotly,add_segments)
importFrom(plotly,add_trace)
importFrom(plotly,group_by)
importFrom(plotly,hide_colorbar)
importFrom(plotly,hide_legend)
importFrom(plotly,layout)
importFrom(plotly,plot_ly)
importFrom(plotly,subplot)
importFrom(plotly,toRGB)
importFrom(plyr,round_any)
importFrom(scales,col_numeric)
importFrom(scales,show_col)
importFrom(shiny,shinyApp)
importFrom(stats,coef)
importFrom(stats,cor)
importFrom(stats,lm)
importFrom(stats,nls)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,var)
importFrom(tools,file_ext)
importFrom(utils,head)
importFrom(utils,packageVersion)
importFrom(utils,setTxtProgressBar)
importFrom(utils,tail)
importFrom(utils,txtProgressBar)
importFrom(utils,write.csv)
importFrom(withr,defer)
importFrom(withr,local_)
useDynLib(StreamFind, .registration=TRUE)