Official 3rd-party apps do not get enabled after upgrade

[grimlck]

Steps to reproduce

1. Update Nextcloud version

Expected behaviour

After the upgrade is finished, all official 3rd-party apps disabled by the upgrade process should be enabled afterwards. (As far as I understand this should be fixed with #239)

Actual behaviour

I have to manually enable those apps after every update.

Info: Pressing Ctrl-C will finish the currently running step and then stops the updater.

[✔] Check for expected files
[✔] Check for write permissions
[✔] Enable maintenance mode
[✔] Create backup
[✔] Downloading
[✔] Verify integrity
[✔] Extracting
[✔] Replace entry points
[✔] Delete old files
[✔] Move new files in place
[✔] Done

Update of code successful.

Should the "occ upgrade" command be executed? [Y/n] Y
Nextcloud or one of the apps require upgrade - only a limited number of commands are available
You may use your browser or the occ upgrade command to do the upgrade
Set log level to debug
Updating database schema
Updated database
Disabled 3rd-party app: bookmarks
Disabled 3rd-party app: bruteforcesettings
Disabled 3rd-party app: calendar
Disabled 3rd-party app: contacts
Disabled 3rd-party app: quota_warning
Disabled 3rd-party app: twofactor_totp
Disabled 3rd-party app: twofactor_u2f
Updating <oauth2> ...
Updated <oauth2> to 1.1.1
Updating <dav> ...
Fix broken values of calendar objects
[...]
Checking for update of app workflowengine in appstore
Checked for update of app "workflowengine" in appstore
Starting code integrity check...
Finished code integrity check
Update successful
Maintenance mode is kept active
Reset log level

Keep maintenance mode active? [y/N] N

Maintenance mode is disabled

Server configuration

Operating system:

Distributor ID: Debian
Description:    Debian GNU/Linux 8.11 (jessie)
Release:        8.11
Codename:       jessie

Web server:
does not matter, also happens when using the CLI updater

Database:

mysql Ver 15.1 Distrib 10.0.32-MariaDB

PHP version:

PHP 5.6.33-0+deb8u1 (cli) (built: Jan  5 2018 15:46:26)
Copyright (c) 1997-2016 The PHP Group
Zend Engine v2.6.0, Copyright (c) 1998-2016 Zend Technologies
    with Zend OPcache v7.0.6-dev, Copyright (c) 1999-2016, by Zend Technologies

Nextcloud version: (see Nextcloud admin page)

13.0.4.0, does not matter though, happens with every update

Where did you install Nextcloud from:

Official Nextcloud download site

Signing status:

Signing status

No errors have been found.

List of activated apps:

App list

Enabled:
  - activity: 2.6.1
  - bookmarks: 0.11.0
  - bruteforcesettings: 1.0.3
  - calendar: 1.6.1
  - comments: 1.3.0
  - contacts: 2.1.5
  - dav: 1.4.7
  - federatedfilesharing: 1.3.1
  - files: 1.8.0
  - files_pdfviewer: 1.2.1
  - files_sharing: 1.5.0
  - files_texteditor: 2.5.1
  - files_trashbin: 1.3.0
  - files_versions: 1.6.0
  - firstrunwizard: 2.2.1
  - gallery: 18.0.0
  - logreader: 2.0.0
  - lookup_server_connector: 1.1.0
  - nextcloud_announcements: 1.2.0
  - notifications: 2.1.2
  - oauth2: 1.1.1
  - password_policy: 1.3.0
  - provisioning_api: 1.3.0
  - quota_warning: 1.2.0
  - serverinfo: 1.3.0
  - sharebymail: 1.3.0
  - systemtags: 1.3.0
  - theming: 1.4.5
  - twofactor_backupcodes: 1.2.3
  - twofactor_totp: 1.4.1
  - twofactor_u2f: 1.5.5
  - updatenotification: 1.3.0
  - workflowengine: 1.3.0
Disabled:
  - admin_audit
  - encryption
  - federation
  - files_external
  - files_retention
  - files_videoplayer
  - socialsharing_email
  - survey_client
  - user_external
  - user_ldap

Nextcloud configuration:

Config report

    "system": {
        "passwordsalt": "***REMOVED SENSITIVE VALUE***",
        "secret": "***REMOVED SENSITIVE VALUE***",
        "trusted_domains": [
            "localhost",
            "***REMOVED SENSITIVE VALUE***"
        ],
        "datadirectory": "***REMOVED SENSITIVE VALUE***",
        "overwrite.cli.url": "http:\/\/localhost",
        "dbtype": "mysql",
        "version": "13.0.4.0",
        "dbname": "***REMOVED SENSITIVE VALUE***",
        "dbhost": "***REMOVED SENSITIVE VALUE***",
        "dbport": "",
        "dbtableprefix": "oc_",
        "dbuser": "***REMOVED SENSITIVE VALUE***",
        "dbpassword": "***REMOVED SENSITIVE VALUE***",
        "logtimezone": "UTC",
        "installed": true,
        "instanceid": "***REMOVED SENSITIVE VALUE***",
        "memcache.local": "\\OC\\Memcache\\APCu",
        "mail_from_address": "***REMOVED SENSITIVE VALUE***",
        "mail_smtpmode": "php",
        "mail_domain": "***REMOVED SENSITIVE VALUE***",
        "maintenance": false,
        "loglevel": 2,
        "theme": ""
    },
"core": {
            "backgroundjobs_mode": "cron",
            "installed.bundles": "[\"CoreBundle\"]",
            "installedat": "1487876789.4364",
            "lastcron": "1529845202",
            "lastupdateResult": "{\"version\":\"13.0.4.0\",\"versionstring\":\"Nextcloud 13.0.4\",\"url\":\"https:\\\/\\\/download.nextcloud.com\\\/server\\\/releases\\\/nextclou
d-13.0.4.zip\",\"web\":\"https:\\\/\\\/docs.nextcloud.com\\\/server\\\/13\\\/admin_manual\\\/maintenance\\\/upgrade.html\",\"autoupdater\":\"1\",\"eol\":\"0\"}",
            "lastupdatedat": "0",
            "moveavatarsdone": "yes",
            "oc.integritycheck.checker": "[]",
            "previewsCleanedUp": "1",
            "public_files": "files_sharing\/public.php",
            "public_webdav": "dav\/appinfo\/v1\/publicwebdav.php",
            "repairlegacystoragesdone": "yes",
            "scss.variables": "d3712e8149284883e553234f6c411a69",
            "shareapi_allow_public_upload": "yes",
            "shareapi_allow_resharing": "no",
            "shareapi_allow_share_dialog_user_enumeration": "yes",
            "shareapi_default_expire_date": "yes",
            "shareapi_enforce_expire_date": "no",
            "shareapi_enforce_links_password": "no",
            "umgmt_send_email": "true",
            "umgmt_show_backend": "false",
            "umgmt_show_email": "true",
            "umgmt_show_last_login": "true",
            "umgmt_show_storage_location": "false",
            "updater.secret.created": "1521236262",
            "vendor": "nextcloud"
        },

Are you using encryption: no

Are you using an external user-backend, if yes which one: no

[nextcloud-bot]

GitMate.io thinks possibly related issues are #7141 (Enabling apps issue), #4482 (Can't enable apps after upgrade from 11.0.2.7 to 11.0.3.2 Chrome only), #6614 (Cannot enable oAuth2 app after upgrading from 11 to 12.), #239 (Re-enable disabled »Official« apps during update), and #2738 ([Feature request] Re-enable - installed - apps after server upgrade, with their latest version).

[MorrisJobke]

This is due to Php 5.6. this will not happen on PHP 7.0+ anymore