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manifest.imjoy.json
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manifest.imjoy.json
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{
"name": "RNA-loc",
"description": "ImJoy plugins to study RNA localization",
"version": "0.2.0",
"uri_root": "",
"plugins": [
{
"name": "CellMembraneDistance",
"type": "native-python",
"version": "0.1.9",
"description": "Plugin to analyze enrichment of RNAs relative to cell membranes.",
"tags": [
"stable",
"dev"
],
"ui": [
"dZ: {id: 'dZ', type: 'number', placeholder: 2}",
"Zmin [pix; 0 for all]: {id: 'Z_min', type: 'number', placeholder: 0}",
"Zmax [pix; 0 for all]: {id: 'Z_max', type: 'number', placeholder: 0}",
"Channel [Cells]: {id: 'cell_ident', type: 'string', placeholder: 'C3-'}",
"Hist [bin]: {id: 'hist_bin_size', type: 'number', placeholder: 20}",
"Hist [max]: {id: 'hist_max', type: 'number', placeholder: 100}",
"FQ file: {id: 'file_FQ', type: 'string', placeholder: 'paste-path-to-file'}"
],
"cover": "",
"inputs": null,
"outputs": null,
"flags": [],
"icon": "border_outer",
"api_version": "0.1.7",
"env": "",
"permissions": [],
"requirements": {
"stable": [
"pip: -U git+https://github.com/muellerflorian/parker-rna-loc-elegans@master"
],
"dev": [
"pip: -U --editable D:\\Documents\\code\\GitHub\\projects\\parker-rna-loc-elegans"
]
},
"dependencies": [
"muellerflorian/parker-rna-loc-elegans:MembraneDistProgress"
],
"uri": "imjoy-plugins\\CellMembraneDistance.imjoy.html"
},
{
"name": "GranuleColocalization",
"type": "native-python",
"version": "0.1.7",
"description": "Plugin to analyze colocalization of RNA clusters and cellular granules.",
"tags": [
"stable",
"dev"
],
"ui": "Follow workflow below.",
"cover": "",
"inputs": null,
"outputs": null,
"flags": [],
"icon": "border_outer",
"api_version": "0.1.7",
"env": "",
"requirements": {
"stable": [
"pip: -U git+https://github.com/muellerflorian/parker-rna-loc-elegans@master"
],
"dev": [
"pip: --editable D:\\Documents\\code\\GitHub\\projects\\parker-rna-loc-elegans"
]
},
"dependencies": [],
"uri": "imjoy-plugins\\GranuleColocalization.imjoy.html"
},
{
"name": "MembraneDistProgress",
"type": "window",
"tags": [],
"ui": "Helper plugin to report analysis progress.",
"version": "0.1.1",
"api_version": "0.1.2",
"description": "Plugin to display progress during processing of large z-stacks.",
"icon": "extension",
"inputs": null,
"outputs": null,
"runnable": false,
"env": "",
"requirements": [
"https://cdn.plot.ly/plotly-latest.min.js",
"https://www.w3schools.com/w3css/4/w3.css",
"https://www.w3schools.com/lib/w3-theme-indigo.css"
],
"dependencies": [],
"defaults": {
"w": 15,
"h": 12
},
"uri": "imjoy-plugins\\MembraneDistProgress.imjoy.html"
},
{
"name": "NuclearEnvelopeDistance",
"type": "native-python",
"version": "0.1.12",
"description": "Plugin to analyze enrichment of RNAs relative to nuclear membrane.",
"tags": [
"stable",
"dev"
],
"ui": [
"dZ: {id: 'dZ', type: 'number', placeholder: 0}",
"Zmin [pix; 0 for all]: {id: 'Z_min', type: 'number', placeholder: 0}",
"Zmax [pix; 0 for all]: {id: 'Z_max', type: 'number', placeholder: 0}",
"Hist [bins]: {id: 'hist_bins', type: 'string', placeholder: '-100,-50,-10,10,50,100,300'}",
"FQ file: {id: 'file_FQ', type: 'string', placeholder: 'paste-path-to-file'}"
],
"cover": "",
"inputs": null,
"outputs": null,
"flags": [],
"icon": "border_outer",
"api_version": "0.1.7",
"env": "",
"requirements": {
"stable": [
"pip: -U git+https://github.com/muellerflorian/parker-rna-loc-elegans@020041b#egg=rnaloc"
],
"dev": [
"pip: --editable D:\\Documents\\code\\GitHub\\projects\\parker-rna-loc-elegans"
]
},
"dependencies": [
"muellerflorian/parker-rna-loc-elegans:MembraneDistProgress"
],
"uri": "imjoy-plugins\\NuclearEnvelopeDistance.imjoy.html"
}
],
"collections": []
}