using matplotlib from pip to avoid the libz error

mritchielab · Oct 4, 2023 · dfa2ba7 · dfa2ba7 · ChangqingW · Oct 4, 2023
1 parent b08e80b
commit dfa2ba7
Showing 1 changed file with 1 addition and 2 deletions.
diff --git a/R/basilisk.R b/R/basilisk.R
@@ -1,15 +1,14 @@
 #' @importFrom basilisk BasiliskEnvironment
 flames_env <- BasiliskEnvironment(
     envname = "flames_env", pkgname = "FLAMES",
-    pip = c("fast-edit-distance==1.2.1", "blaze2==2.0.0a9"),
+    pip = c("fast-edit-distance==1.2.1", "blaze2==2.0.0a9", "matplotlib==3.5.3"),
     packages = c(
         "python==3.10",
         "numpy==1.25.0",
         "scipy==1.11.1",
         "pysam==0.21.0",
         "cutadapt==4.4",
         "tqdm==4.64.1",
-        "matplotlib==3.5.3",
         "pandas==1.3.5"
     ),
     channels = c("conda-forge", "bioconda", "defaults")