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update basilisk env: add minimap2, samtools #238

update basilisk env: add minimap2, samtools

update basilisk env: add minimap2, samtools #238

Triggered via pull request September 25, 2024 03:16
Status Failure
Total duration 28m 32s
Artifacts 2

check-bioc.yml

on: pull_request
docker-build-and-push
28m 17s
docker-build-and-push
Matrix: build-check
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6 errors and 4 warnings
macOS-latest (4.4)
Running examples in ‘FLAMES-Ex.R’ failed
macOS-latest (4.4)
one or more Python packages failed to install [error code 1]
macOS-latest (4.4)
R CMD check found ERRORs
macOS-latest (4.4)
Process completed with exit code 1.
docker-build-and-push
buildx failed with: ERROR: failed to solve: process "/bin/sh -c Rscript -e \"basilisk::basiliskRun(env = FLAMES:::flames_env, fun = function(){})\"" did not complete successfully: exit code: 1
ubuntu-latest (4.4)
Process completed with exit code 1.
macOS-latest (4.4)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/cache@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
macOS-latest (4.4)
harfbuzz 9.0.0 is already installed and up-to-date. To reinstall 9.0.0, run: brew reinstall harfbuzz
macOS-latest (4.4)
macOS's Gatekeeper has been disabled for this Cask
ubuntu-latest (4.4)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/cache@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

Artifacts

Produced during runtime
Name Size
Linux-biocversion-RELEASE_3_19-r-4.4-results
19 MB
macOS-biocversion-RELEASE_3_19-r-4.4-results
17.1 MB