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Lipidomics Informatics for Life Sciences

LIFS Tools Overview

Contributor Covenant

Lipidomics Informatics for Life Science Website

Lipidomics Informatics for Life Science Website

LIFS Tools Projects Overview

Code of Conduct

We openly invite contributions from any interested party and try to actively encourage and foster collaboration. Please note that we adhere to the Contributor Covenant Code of Conduct to create and maintain a welcoming, positive and productive environment for our community.

Contributing

Please see our Contribution Guide for an overview how you can contribute to our projects either via reporting bugs, requesting new features, contributing fixes, code or documentation.

Asking for Access to Source Code

Some of our source code repositories may not be public at the moment. If you would like to get access to the following projects, please contact us at https://lifs-tools.org/support.

  • LipidXplorer - lipid identification and quantification for shotgun lipidomics.
  • lxPostman - post-processing and absolute quantification of LipidXplorer output.

Getting Help and Support

  • Option 1: Use the corresponding GitHub repository Issues to create an issue.
  • Option 2: Go to https://lifs-tools.org/support to send an E-Mail to the maintainers.
  • Option 3: Use the discussion board for things of more general interest.

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  1. lipidcreator lipidcreator Public

    LipidCreator is a powerful stand alone kick-off tool for targeted lipidomics and a plugin for Skyline. It provides convenient tools to generate transition lists for labeled and unlabeled lipids.

    C# 11 2

  2. goslin goslin Public

    Goslin is the Grammar on succinct lipid nomenclature.

    ANTLR 11 2

  3. jmzTab-m jmzTab-m Public

    Reference implementation for mzTab-M 2.0 for metabolomics

    Java 5 6

  4. flipr flipr Public

    Fragment-based Lipid Relative Intensity Prediction

    R

Repositories

Showing 10 of 32 repositories
  • jgoslin Public

    Java implementation of the latest shorthand nomenclature.

    lifs-tools/jgoslin’s past year of commit activity
    Java 4 Apache-2.0 0 1 11 Updated Sep 27, 2024
  • jmzTab-m Public

    Reference implementation for mzTab-M 2.0 for metabolomics

    lifs-tools/jmzTab-m’s past year of commit activity
    Java 5 Apache-2.0 6 5 10 Updated Sep 27, 2024
  • jmzTab-m-webapp Public

    The mzTab Validator webapplication

    lifs-tools/jmzTab-m-webapp’s past year of commit activity
    JavaScript 0 Apache-2.0 1 2 14 Updated Sep 27, 2024
  • goslin-webapp Public

    Web application and REST Api for parsers for the Grammars on succinct lipid nomenclature (Goslin).

    lifs-tools/goslin-webapp’s past year of commit activity
    Java 1 Apache-2.0 0 2 11 Updated Sep 27, 2024
  • lifs-tools/lipidxplorer’s past year of commit activity
    Python 1 1 2 0 Updated Sep 24, 2024
  • keycloak-docker-role-mapper Public

    Keycloak mapper implementation to support role-based authentication via Keycloak, mapping to docker registries push and pull scopes.

    lifs-tools/keycloak-docker-role-mapper’s past year of commit activity
    Java 9 Apache-2.0 5 2 5 Updated Sep 23, 2024
  • lipidomics-checklist Public

    Lipidomics Checklist

    lifs-tools/lipidomics-checklist’s past year of commit activity
    Python 0 MIT 0 2 0 Updated Aug 27, 2024
  • lifs-tools/ils-ceramide-ring-trial’s past year of commit activity
    R 0 0 0 0 Updated Aug 26, 2024
  • goslin Public

    Goslin is the Grammar on succinct lipid nomenclature.

    lifs-tools/goslin’s past year of commit activity
    ANTLR 11 2 10 9 Updated Aug 6, 2024
  • cppgoslin Public

    C++ implementation of parsers for the Grammars on succinct lipid nomenclature (Goslin).

    lifs-tools/cppgoslin’s past year of commit activity
    C++ 0 0 1 5 Updated Aug 4, 2024

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