From 1b82eec6d93ec9135cc808e7a0d677320dba85e3 Mon Sep 17 00:00:00 2001
From: imendes93 <ines@lifebit.ai>
Date: Thu, 23 Dec 2021 15:25:07 +0000
Subject: [PATCH] add dockerfile for csvtoolkit

---
 containers/csvkit/Dockerfile      | 7 +++++++
 containers/csvkit/environment.yml | 9 +++++++++
 2 files changed, 16 insertions(+)
 create mode 100644 containers/csvkit/Dockerfile
 create mode 100644 containers/csvkit/environment.yml

diff --git a/containers/csvkit/Dockerfile b/containers/csvkit/Dockerfile
new file mode 100644
index 00000000..f2d70a8b
--- /dev/null
+++ b/containers/csvkit/Dockerfile
@@ -0,0 +1,7 @@
+FROM nfcore/base:1.9
+LABEL authors="ines@lifebit.ai" \
+      description="Docker image containing csvkit toolkit, including in2csv"
+
+COPY environment.yml /
+RUN conda env create -f /environment.yml && conda clean -a
+ENV PATH /opt/conda/envs/csvkit/bin:$PATH
\ No newline at end of file
diff --git a/containers/csvkit/environment.yml b/containers/csvkit/environment.yml
new file mode 100644
index 00000000..bddc658b
--- /dev/null
+++ b/containers/csvkit/environment.yml
@@ -0,0 +1,9 @@
+name: csvkit
+channels:
+  - conda-forge
+  - bioconda
+  - defaults
+  - anaconda
+dependencies:
+  - python=3.8
+  - csvkit=1.0.5