{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":25699180,"defaultBranch":"master","name":"genesis","ownerLogin":"lczech","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2014-10-24T17:15:37.000Z","ownerAvatar":"https://github.com/avatars/u/4741887?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1722891413.0","currentOid":""},"activityList":{"items":[{"before":"c4b0f8f9d13e9f3e8c678b7e5814b34e1b8a4965","after":"0ee92c1de616472b72254bc5c96affb11865e2a5","ref":"refs/heads/dev","pushedAt":"2024-09-03T12:33:15.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"lczech","name":"Lucas Czech","path":"/lczech","primaryAvatarUrl":"https://github.com/avatars/u/4741887?s=80&v=4"},"commit":{"message":"Speed up gap size computation in canonical kmer encoding","shortMessageHtmlLink":"Speed up gap size computation in canonical kmer encoding"}},{"before":"d4b71cf004b56675ee31d819400d6e9f84b10553","after":"fb18c0ff6c621a950e2665c9224e9acb3c9b372a","ref":"refs/heads/master","pushedAt":"2024-09-03T12:33:15.000Z","pushType":"push","commitsCount":33,"pusher":{"login":"lczech","name":"Lucas Czech","path":"/lczech","primaryAvatarUrl":"https://github.com/avatars/u/4741887?s=80&v=4"},"commit":{"message":"Fix header guard","shortMessageHtmlLink":"Fix header guard"}},{"before":"9970060832184dc9a46a023de6a0f0f821b9283c","after":"c4b0f8f9d13e9f3e8c678b7e5814b34e1b8a4965","ref":"refs/heads/dev","pushedAt":"2024-09-02T17:05:16.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"lczech","name":"Lucas Czech","path":"/lczech","primaryAvatarUrl":"https://github.com/avatars/u/4741887?s=80&v=4"},"commit":{"message":"Speed improvements in canonical kmer encoding","shortMessageHtmlLink":"Speed improvements in canonical kmer encoding"}},{"before":"b236fff6f0f48230999760ef0600ef54f9bf772a","after":"9970060832184dc9a46a023de6a0f0f821b9283c","ref":"refs/heads/dev","pushedAt":"2024-08-27T13:35:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lczech","name":"Lucas Czech","path":"/lczech","primaryAvatarUrl":"https://github.com/avatars/u/4741887?s=80&v=4"},"commit":{"message":"Fix gcc 7 optimization bug yet again","shortMessageHtmlLink":"Fix gcc 7 optimization bug yet again"}},{"before":"d9d86085385c890f2c08751bff869ea655e5a642","after":"b236fff6f0f48230999760ef0600ef54f9bf772a","ref":"refs/heads/dev","pushedAt":"2024-08-27T12:15:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lczech","name":"Lucas Czech","path":"/lczech","primaryAvatarUrl":"https://github.com/avatars/u/4741887?s=80&v=4"},"commit":{"message":"Fix gcc 7 optimization bug yet more","shortMessageHtmlLink":"Fix gcc 7 optimization bug yet more"}},{"before":"babad5e02d0fe9d0467711c1e28d170508e813ff","after":"d9d86085385c890f2c08751bff869ea655e5a642","ref":"refs/heads/dev","pushedAt":"2024-08-27T12:03:23.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"lczech","name":"Lucas Czech","path":"/lczech","primaryAvatarUrl":"https://github.com/avatars/u/4741887?s=80&v=4"},"commit":{"message":"Fix gcc 7 optimization bug more","shortMessageHtmlLink":"Fix gcc 7 optimization bug more"}},{"before":"a1d578b77da2f87d75760e15782e80e30714d65f","after":"babad5e02d0fe9d0467711c1e28d170508e813ff","ref":"refs/heads/dev","pushedAt":"2024-08-27T11:31:42.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"lczech","name":"Lucas Czech","path":"/lczech","primaryAvatarUrl":"https://github.com/avatars/u/4741887?s=80&v=4"},"commit":{"message":"Inline Kmer Extractor private functions","shortMessageHtmlLink":"Inline Kmer Extractor private functions"}},{"before":"0f78bed1cb3af13cf028074511b5a3e2581efb91","after":"a1d578b77da2f87d75760e15782e80e30714d65f","ref":"refs/heads/dev","pushedAt":"2024-08-26T17:25:52.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"lczech","name":"Lucas Czech","path":"/lczech","primaryAvatarUrl":"https://github.com/avatars/u/4741887?s=80&v=4"},"commit":{"message":"Fix gcc 7 optimization bug.\n\nFor some reason, gcc 7 tries to optimize a function kmer canonical encoding too much,\nresulting in a warning that gets turned into an error:\n\nerror: assuming signed overflow does not occur when assuming that (X + c) >= X is always true [-Werror=strict-overflow]\n if( l + 2 >= k )\n\nfor the case in encode_gapped_palindrome_() where l==k.\nSo here we instead set l to k now, in the hope that this fixes the\nissue.","shortMessageHtmlLink":"Fix gcc 7 optimization bug."}},{"before":"df63c7814272d4257735c7b8408d08e6e801c5c2","after":"0f78bed1cb3af13cf028074511b5a3e2581efb91","ref":"refs/heads/dev","pushedAt":"2024-08-26T16:40:18.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"lczech","name":"Lucas Czech","path":"/lczech","primaryAvatarUrl":"https://github.com/avatars/u/4741887?s=80&v=4"},"commit":{"message":"Update genesis headers","shortMessageHtmlLink":"Update genesis headers"}},{"before":"6011e3869384ae48dc66e65b2ec9ec237af73fdc","after":"df63c7814272d4257735c7b8408d08e6e801c5c2","ref":"refs/heads/dev","pushedAt":"2024-08-23T15:07:57.000Z","pushType":"push","commitsCount":13,"pusher":{"login":"lczech","name":"Lucas Czech","path":"/lczech","primaryAvatarUrl":"https://github.com/avatars/u/4741887?s=80&v=4"},"commit":{"message":"Optimize minimal canonical encoding functions","shortMessageHtmlLink":"Optimize minimal canonical encoding functions"}},{"before":"1a220c266248a84cb02338975f5ef420826b8495","after":"d4b71cf004b56675ee31d819400d6e9f84b10553","ref":"refs/heads/master","pushedAt":"2024-08-05T20:56:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lczech","name":"Lucas Czech","path":"/lczech","primaryAvatarUrl":"https://github.com/avatars/u/4741887?s=80&v=4"},"commit":{"message":"Release v0.32.0","shortMessageHtmlLink":"Release v0.32.0"}},{"before":"7a91d0c3cfea15fb84d92be5fca6786eba5134c3","after":"1a220c266248a84cb02338975f5ef420826b8495","ref":"refs/heads/master","pushedAt":"2024-08-05T20:35:06.000Z","pushType":"push","commitsCount":81,"pusher":{"login":"lczech","name":"Lucas Czech","path":"/lczech","primaryAvatarUrl":"https://github.com/avatars/u/4741887?s=80&v=4"},"commit":{"message":"Merge branch 'dev'","shortMessageHtmlLink":"Merge branch 'dev'"}},{"before":"5197621925aecee869d2681d64582adea8a0348d","after":"6011e3869384ae48dc66e65b2ec9ec237af73fdc","ref":"refs/heads/dev","pushedAt":"2024-08-05T20:35:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lczech","name":"Lucas Czech","path":"/lczech","primaryAvatarUrl":"https://github.com/avatars/u/4741887?s=80&v=4"},"commit":{"message":"Refine tree postorder iterator for speed","shortMessageHtmlLink":"Refine tree postorder iterator for speed"}},{"before":"8c419c47a9d6f13ead99df243aa2ba7f2b8683a7","after":"5197621925aecee869d2681d64582adea8a0348d","ref":"refs/heads/dev","pushedAt":"2024-07-31T23:43:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lczech","name":"Lucas Czech","path":"/lczech","primaryAvatarUrl":"https://github.com/avatars/u/4741887?s=80&v=4"},"commit":{"message":"Add Genome Locus Set invert function","shortMessageHtmlLink":"Add Genome Locus Set invert function"}},{"before":"94001abefca2e73fb4bbd535c96e8f602299d38a","after":"8c419c47a9d6f13ead99df243aa2ba7f2b8683a7","ref":"refs/heads/dev","pushedAt":"2024-07-31T21:02:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lczech","name":"Lucas Czech","path":"/lczech","primaryAvatarUrl":"https://github.com/avatars/u/4741887?s=80&v=4"},"commit":{"message":"Fix base class for genome window functions","shortMessageHtmlLink":"Fix base class for genome window functions"}},{"before":"f7c74c4caf9e867d8374822f59b395e1c525b99f","after":"94001abefca2e73fb4bbd535c96e8f602299d38a","ref":"refs/heads/dev","pushedAt":"2024-07-31T20:56:30.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"lczech","name":"Lucas Czech","path":"/lczech","primaryAvatarUrl":"https://github.com/avatars/u/4741887?s=80&v=4"},"commit":{"message":"Remove llvm-18 in CI due to setup issues","shortMessageHtmlLink":"Remove llvm-18 in CI due to setup issues"}},{"before":"1e60e8df80f5214829aa76601d7c827caf290da9","after":"f7c74c4caf9e867d8374822f59b395e1c525b99f","ref":"refs/heads/dev","pushedAt":"2024-07-31T20:08:54.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"lczech","name":"Lucas Czech","path":"/lczech","primaryAvatarUrl":"https://github.com/avatars/u/4741887?s=80&v=4"},"commit":{"message":"Add provided loci mask for window averaging","shortMessageHtmlLink":"Add provided loci mask for window averaging"}},{"before":"7c49b5e897645d6ab4673e199987b02ea81c855e","after":"1e60e8df80f5214829aa76601d7c827caf290da9","ref":"refs/heads/dev","pushedAt":"2024-07-17T15:16:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lczech","name":"Lucas Czech","path":"/lczech","primaryAvatarUrl":"https://github.com/avatars/u/4741887?s=80&v=4"},"commit":{"message":"Fix ref base lower case comparison issue","shortMessageHtmlLink":"Fix ref base lower case comparison issue"}},{"before":"ca0afb161a540ce2eebda24e3f511cde86dbeaf0","after":"7c49b5e897645d6ab4673e199987b02ea81c855e","ref":"refs/heads/dev","pushedAt":"2024-07-16T15:35:21.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"lczech","name":"Lucas Czech","path":"/lczech","primaryAvatarUrl":"https://github.com/avatars/u/4741887?s=80&v=4"},"commit":{"message":"Exclude missing data from available loci window avg function","shortMessageHtmlLink":"Exclude missing data from available loci window avg function"}},{"before":"588fd9bbc0c844c0ee5acef1e152d05cc4c9c97a","after":"ca0afb161a540ce2eebda24e3f511cde86dbeaf0","ref":"refs/heads/dev","pushedAt":"2024-07-04T23:00:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lczech","name":"Lucas Czech","path":"/lczech","primaryAvatarUrl":"https://github.com/avatars/u/4741887?s=80&v=4"},"commit":{"message":"Minor refinement in cpu usage CI test case for MacOS","shortMessageHtmlLink":"Minor refinement in cpu usage CI test case for MacOS"}},{"before":"fa436358652ce9773e55b3ca952ba197851b3e04","after":"588fd9bbc0c844c0ee5acef1e152d05cc4c9c97a","ref":"refs/heads/dev","pushedAt":"2024-07-04T21:41:07.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"lczech","name":"Lucas Czech","path":"/lczech","primaryAvatarUrl":"https://github.com/avatars/u/4741887?s=80&v=4"},"commit":{"message":"Fix race condition for Thread Pool pending counter","shortMessageHtmlLink":"Fix race condition for Thread Pool pending counter"}},{"before":"071e05097914210b5eb3845939a417b2de00658b","after":"fa436358652ce9773e55b3ca952ba197851b3e04","ref":"refs/heads/dev","pushedAt":"2024-07-04T13:33:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lczech","name":"Lucas Czech","path":"/lczech","primaryAvatarUrl":"https://github.com/avatars/u/4741887?s=80&v=4"},"commit":{"message":"Fix typedef inconsistency pt 2","shortMessageHtmlLink":"Fix typedef inconsistency pt 2"}},{"before":"64d8254d1fe48a5a5616d99a08ad41ca18e8c6bc","after":"071e05097914210b5eb3845939a417b2de00658b","ref":"refs/heads/dev","pushedAt":"2024-07-04T13:27:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lczech","name":"Lucas Czech","path":"/lczech","primaryAvatarUrl":"https://github.com/avatars/u/4741887?s=80&v=4"},"commit":{"message":"Fix typedef inconsistency","shortMessageHtmlLink":"Fix typedef inconsistency"}},{"before":"3f37351faf57114ca07bbe88b181ddfa1f487a2c","after":"64d8254d1fe48a5a5616d99a08ad41ca18e8c6bc","ref":"refs/heads/dev","pushedAt":"2024-07-04T13:20:14.000Z","pushType":"push","commitsCount":7,"pusher":{"login":"lczech","name":"Lucas Czech","path":"/lczech","primaryAvatarUrl":"https://github.com/avatars/u/4741887?s=80&v=4"},"commit":{"message":"Add enqueue and forget function for Thread Pool","shortMessageHtmlLink":"Add enqueue and forget function for Thread Pool"}},{"before":"2fa2ab3955922869a80094d5564af4e227c52512","after":"3f37351faf57114ca07bbe88b181ddfa1f487a2c","ref":"refs/heads/dev","pushedAt":"2024-07-02T22:12:58.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"lczech","name":"Lucas Czech","path":"/lczech","primaryAvatarUrl":"https://github.com/avatars/u/4741887?s=80&v=4"},"commit":{"message":"Refine CI setup pt 6","shortMessageHtmlLink":"Refine CI setup pt 6"}},{"before":"19063c5668a5418cc8aa210a14e0236befeb87b4","after":"2fa2ab3955922869a80094d5564af4e227c52512","ref":"refs/heads/dev","pushedAt":"2024-07-02T16:33:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lczech","name":"Lucas Czech","path":"/lczech","primaryAvatarUrl":"https://github.com/avatars/u/4741887?s=80&v=4"},"commit":{"message":"Refine CI setup pt 5","shortMessageHtmlLink":"Refine CI setup pt 5"}},{"before":"e4dca94dd358dba828ae5072dac9eed89959dfde","after":"19063c5668a5418cc8aa210a14e0236befeb87b4","ref":"refs/heads/dev","pushedAt":"2024-07-02T15:41:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lczech","name":"Lucas Czech","path":"/lczech","primaryAvatarUrl":"https://github.com/avatars/u/4741887?s=80&v=4"},"commit":{"message":"Refine CI setup pt 4","shortMessageHtmlLink":"Refine CI setup pt 4"}},{"before":"fd35f09b417c2fae8783af5355144cf5af7504fd","after":"e4dca94dd358dba828ae5072dac9eed89959dfde","ref":"refs/heads/dev","pushedAt":"2024-07-02T15:09:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lczech","name":"Lucas Czech","path":"/lczech","primaryAvatarUrl":"https://github.com/avatars/u/4741887?s=80&v=4"},"commit":{"message":"Refine CI setup pt 3","shortMessageHtmlLink":"Refine CI setup pt 3"}},{"before":"79eb6ab19de02c3f935b278ad8e4d880226d5d9a","after":"fd35f09b417c2fae8783af5355144cf5af7504fd","ref":"refs/heads/dev","pushedAt":"2024-07-02T15:04:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lczech","name":"Lucas Czech","path":"/lczech","primaryAvatarUrl":"https://github.com/avatars/u/4741887?s=80&v=4"},"commit":{"message":"Refine CI setup pt 2","shortMessageHtmlLink":"Refine CI setup pt 2"}},{"before":"68051af82c7ab5ca16585f89845c9b5c7a6003cc","after":"79eb6ab19de02c3f935b278ad8e4d880226d5d9a","ref":"refs/heads/dev","pushedAt":"2024-07-02T14:34:38.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"lczech","name":"Lucas Czech","path":"/lczech","primaryAvatarUrl":"https://github.com/avatars/u/4741887?s=80&v=4"},"commit":{"message":"Refine CI setup pt 1","shortMessageHtmlLink":"Refine CI setup pt 1"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0wM1QxMjozMzoxNS4wMDAwMDBazwAAAASrjX6z","startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0wM1QxMjozMzoxNS4wMDAwMDBazwAAAASrjX6z","endCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wNy0wMlQxNDozNDozOC4wMDAwMDBazwAAAAR07Nww"}},"title":"Activity ยท lczech/genesis"}