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ChangeLog
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===============================================================================
Tag Creator: klindsay
Developers: klindsay
Tag Date: 06 Mar 2019
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20190306
Tag Summary: correct ssp compset longname string matching
Testing: none
M cime_config/config_component.xml
===============================================================================
Tag Creator: klindsay
Developers: klindsay, altuntas
Tag Date: 22 Feb 2019
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20190222
Tag Summary: Add support for OCN_TRANSIENT=ssp126,ssp585
Testing: aux_pop on cheyenne/intel (with ssp585 changes)
all tests pass, all tests passed b4b
M bld/build-namelist
M bld/namelist_files/namelist_defaults_pop.xml
M cime_config/config_component.xml
===============================================================================
Tag Creator: altuntas
Developers: altuntas
Tag Date: 18 Jan 2019
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20190118
Tag Summary: Set sfwf_weak_restore to 4 years for CORE2 and 1 year for JRA
Remove several unnecessary _HIRES ifdefs
(Additional CORE2 and JRA forcing changes in CIME PR #2984)
Testing: aux_pop and aux_pop_tripole on cheyenne/intel, answer changes in
all forced cases (due to changes in sfwf_weak_restore and
coldair_outbreak_mod)
M bld/build-namelist
M bld/namelist_files/namelist_defaults_pop.xml
M source/step_mod.F90
M source/tavg.F90
===============================================================================
Tag Creator: jedwards
Developers: jedwards
Tag Date: 15 Jan 2019
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20190115
Tag Summary: Allow buildcpp to rewrite case env_build.xml
M cime_config/buildlib
M cime_config/buildnml
===============================================================================
Tag Creator: altuntas
Developers: altuntas
Tag Date: 19 Dec 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20181219
Tag Summary: Add the 48yr/day PE layout decomposition
Testing: aux_pop on cheyenne/intel, b4b
Files Modified:
M bld/generate_pop_decomp.xml
===============================================================================
Tag Creator: mlevy
Developers: mlevy
Tag Date: 22 Oct 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20181022
Tag Summary: Bring in MARBL code clean-up
Testing: aux_pop on cheyenne/intel, aux_pop_MARBL on cheyenne/{intel,gnu} and
hobart/{nag,pgi}. All tests pass except NLCOMP when ecosys tracer
module is turned on. (Note: BASELINE tests pass, even with ecosys)
Files Modified:
M Externals_POP.cfg
M MARBL_scripts/MARBL_wrappers/MARBL_settings.py
===============================================================================
Tag Creator: altuntas
Developers: altuntas
Tag Date: 19 Oct 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20181019
Tag Summary: Enable MOC computation with land-block elimination
- ignore missing values during lbe aux grid check
- set gather_global_dbl missing value to undefined_nf_r8 instead of undefined_nf
- add gx1v7 spacecurve decompositions
- add gx1v7 spacecurve test
Testing: aux_pop on cheyenne/intel. bfb except the new test.
Files Modified:
M mpi/gather_scatter.F90
M source/diags_on_lat_aux_grid.F90
M bld/generate_pop_decomp.xml
M cime_config/testdefs/testlist_pop.xml
A cime_config/testdefs/testmods_dirs/pop/default_spacecurve
A cime_config/testdefs/testmods_dirs/pop/default_spacecurve/shell_commands
A cime_config/testdefs/testmods_dirs/pop/default_spacecurve/user_nl_pop
===============================================================================
Tag Creator: mlevy
Developers: mlevy
Tag Date: 15 Oct 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20181015
Tag Summary: Update CVMix to latest version (bfb, better performance)
Also, change cvmix test (which uses lcvmix = .true.) to
no_cvmix test (which uses lcvmix = .false.) -- default value
of lcvmix is already true, so we need a test using the old KPP
module.
Testing: aux_pop on cheyenne/intel. bfb except the renamed test.
M Externals_POP.cfg
M cime_config/testdefs/testlist_pop.xml
D cime_config/testdefs/testmods_dirs/pop/cvmix
D cime_config/testdefs/testmods_dirs/pop/cvmix/include_user_mods
D cime_config/testdefs/testmods_dirs/pop/cvmix/user_nl_pop
A cime_config/testdefs/testmods_dirs/pop/no_cvmix
A cime_config/testdefs/testmods_dirs/pop/no_cvmix/include_user_mods
A cime_config/testdefs/testmods_dirs/pop/no_cvmix/user_nl_pop
===============================================================================
Tag Creator: altuntas
Developers: jedwards
Tag Date: 04 Oct 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20181004
Tag Summary: A fix for cime issue #2822 and run the cime interface scripts through py3 pylint
Also, added a multi-instance C1850ECO test in aux_pop
Testing: aux_pop on cheyenne/intel. bfb except the new test.
M bld/build-namelist
M cime_config/buildcpp
M cime_config/buildlib
M cime_config/buildnml
M cime_config/testdefs/testlist_pop.xml
===============================================================================
Tag Creator: klindsay
Developers: klindsay
Tag Date: 26 Sep 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180926
Tag Summary: update ndep for OCN_TRANSIENT=1850-2000
updated ndep forcing files are from CESM 2.1 BWHIST runs, and span 1849-2015
introduce new test into cheyenne/intel, aux_pop and aux_pop_MARBL:
ERS.T62_g17.C1850ECO.cheyenne_intel.pop-ecosys_ocn_transient_1850_2000
Testing: aux_pop on cheyenne/intel
tests pass, including baseline comparison to cesm_pop_2_1_20180921
(new test fails NLCOMP and BASELINE)
Files Modified:
M ChangeLog
M bld/namelist_files/namelist_defaults_pop.xml
M cime_config/testdefs/testlist_pop.xml
A cime_config/testdefs/testmods_dirs/pop/ecosys_ocn_transient_1850_2000
A cime_config/testdefs/testmods_dirs/pop/ecosys_ocn_transient_1850_2000/include_user_mods
A cime_config/testdefs/testmods_dirs/pop/ecosys_ocn_transient_1850_2000/shell_commands
===============================================================================
Tag Creator: altuntas
Developers: altuntas
Tag Date: 21 Sep 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180921
Tag Summary: add coordinates to tavg_TEMP2 (for CMIP6 diags)
Testing: aux_pop on cheyenne/intel
Files Modified:
M source/baroclinic.F90
===============================================================================
Tag Creator: klindsay
Developers: klindsay
Tag Date: 12 Sep 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180912
Tag Summary: add support for abio_dic_dic14 in CMIP6 historical runs
merged from abio_cmip6_historical_n01_cesm_pop_2_1_20180830
Testing: aux_pop on cheyenne/intel
except for tests mentioned below, all tests pass
NLCOMP fails for tests with abio_dic_dic14, because of new namelist var
some MEMCOMP failures
if OCN_TRANSIENT='1850-2000' then set abio_atm_co2_opt='drv_diag', abio_atm_d14c_opt='file'
add ABIO-DIC modifier to POP2 in compset longnames, enable abio_dic_dic14 if it is present
extend pattern matching to allow POP2 compset modifiers to be in arbitrary order
(remove ECO-PHYS-CYCLE modifier, replace usage with %ECO%PHYS-CYCLE)
add abio_dic_dic14_restfile_fallback namelist var
if abio_dic_dic14 is reading from a restart file, and module tracers are not present,
then read them from the file specified by abio_dic_dic14_restfile_fallback
set abio_dic_dic14_restfile_fallback to most recent results from CMIP6 B1850 control run (for g17 only)
Files Modified:
M .
M ChangeLog
M bld/build-namelist
M bld/namelist_files/namelist_defaults_pop.xml
M bld/namelist_files/namelist_definition_pop.xml
M cime_config/config_component.xml
M cime_config/config_compsets.xml
M input_templates/ocn.abio_dic_dic14.tavg.csh
M source/abio_dic_dic14_mod.F90
===============================================================================
Tag Creator: mlevy
Developers: mlevy
Tag Date: 30 August 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180830
Tag Summary: Merge latest marbl_dev branch tag (n98) onto trunk
-- bit-for-bit code-cleanup / refactor in MARBL requires some
changes to the pop driver as well
Testing: aux_pop on cheyenne_intel and aux_pop_MARBL on cheyenne_{intel,gnu}
as well as hobart_{nag,pgi}. Testing was done on marbl_dev_n98 which
is identical to this tag
M Externals_POP.cfg
M source/ecosys_driver.F90
M source/ecosys_forcing_mod.F90
M source/ecosys_running_mean_saved_state_mod.F90
M source/ecosys_tavg.F90
M source/ecosys_tracers_and_saved_state_mod.F90
M source/passive_tracers.F90
===============================================================================
Tag Creator: mlevy
Developers: mlevy
Tag Date: 29 August 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180829
Tag Summary: Update manage_externals to manic-v1.1.5
(Also updated the .git remote)
-- Requested by Bill Sacks due to bug in older versions
Testing: None (ensured that CVMix and MARBL were checked out properly)
CVMIX tag: v0.90-beta
MARBL tag: marbl0.31.0
M externals/manage_externals
[Lots of files modified in the above directory]
===============================================================================
Tag Creator: klindsay
Developers: klindsay
Tag Date: 4 August 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180804
Tag Summary: Merge latest final_CMIP6_BGC_tags branch tag (n13) onto trunk
correct IAGE reset when lrobert_filter=.true., add CMIP tracer budget diagnostics
move submeso and diag_gm_bolus-dependent tavg vars into separate tavg_contents files
update 1850 Ndep forcing from recent coupled B1850 WACCM run
correct EBM tavg vars, enable some 2D EBM tavg vars by default
Testing: aux_pop intel/cheyenne
MARBL tag marbl0.31.0 from marbl-ecosys/MARBL
tests pass, including BASELINE to cesm_pop_2_1_20180720
BASELINE fails for lrobert_filter=.true., because IAGE changed
NLCOMP and BASELINE failed for all ECO compsets, because of namelist/forcing changes
some MEMCOMP failures
M ChangeLog
M bld/build-namelist
M bld/namelist_files/namelist_defaults_pop.xml
M bld/namelist_files/namelist_definition_pop.xml
A + input_templates/gm_bolus_terms_tavg_contents
A + input_templates/gm_bolus_terms_tavg_contents_high_freq
M input_templates/gx1v6_tavg_contents
M input_templates/gx1v6_tavg_contents_high_freq
M input_templates/gx1v7_tavg_contents
M input_templates/gx1v7_tavg_contents_high_freq
M input_templates/gx3v5_tavg_contents
M input_templates/gx3v7_tavg_contents
M input_templates/ocn.cfc.tavg.csh
M input_templates/ocn.iage.tavg.csh
M input_templates/ocn.sf6.tavg.csh
A + input_templates/submeso_terms_tavg_contents
A + input_templates/submeso_terms_tavg_contents_high_freq
M source/IRF_mod.F90
M source/estuary_vsf_mod.F90
M source/hmix_gm.F90
M source/hmix_gm_aniso.F90
A + source/hmix_gm_share.F90
M source/horizontal_mix.F90
M source/mix_submeso.F90
M source/passive_tracers.F90
M source/step_mod.F90
M source/tavg.F90
===============================================================================
Tag Creator: mlevy
Developers: mlevy
Tag Date: 20 July 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180720
Tag Summary: Merge latest marbl_dev branch tag (n95) onto trunk
1) POP changes
- New OCN_BGC_CONFIG variable in env_run.xml determines which
tunings to use
- Some namelist variables have different defaults depending on
OCN_BGC_CONFIG
- New test run in aux_pop and aux_pop_MARBL ensures no
unexpected changes to old tunings
2) MARBL changes
- Multiple default settings files to allow running with old
defaults (e.g. CESM 2.0 configuration); POP selects file
based on OCN_BGC_CONFIG value
Testing: aux_pop on cheyenne (intel) (identical code on marbl_dev and
marbl_dev_levy tested with aux_pop_MARBL on cheyenne and hobart)
-- all tests pass except new ecosys_cesm2_0_settings fail NLCOMP
and BASELINE due to lack of existing baselines
M Externals_POP.cfg
M MARBL_scripts/MARBL_wrappers/MARBL_diagnostics.py
M MARBL_scripts/MARBL_wrappers/MARBL_settings.py
M bld/namelist_files/namelist_defaults_pop.xml
M cime_config/buildcpp
M cime_config/buildnml
M cime_config/config_component.xml
M cime_config/testdefs/testlist_pop.xml
A + cime_config/testdefs/testmods_dirs/pop/ecosys_cesm2_0_settings
===============================================================================
Tag Creator: mlevy
Developers: klindsay
Tag Date: 19 July 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180716
Tag Summary: Tune ocean BGC for CMIP 6 -- this requires an updated MARBL tag
and some new POP namelist options to control new features in MARBL.
Also, three bugfixes:
1. Missing scale_factor for N_SALT diagnostic
2. Correct illegal argument aliasing in time_management.F90
3. Tracer states and some other diagnostics were computed incorrectly
when the Robert filter was enabled (i.e. in gx1v7 runs)
Testing: aux_pop on cheyenne/intel - all POP2%ECO tests fail BASELINE and
NLCOMP; all non-ECO gx1v7 tests fail BASELINE (but pass NLCOMP),
all non-ECO gx3v7 tests pass both BASELINE and NLCOMP.
M Externals_POP.cfg
M MARBL_scripts/MARBL_wrappers/MARBL_settings.py
M MARBL_scripts/MARBL_wrappers/POP_ecosys_diagnostics.py
M bld/build-namelist
M bld/namelist_files/namelist_defaults_pop.xml
M bld/namelist_files/namelist_definition_pop.xml
M cime_config/config_component.xml
M input_templates/gx1v6_tavg_contents
M input_templates/gx1v7_tavg_contents
M input_templates/gx3v7_tavg_contents
M input_templates/ocn.abio_dic_dic14.tavg.csh
M input_templates/ocn.cfc.tavg.csh
M input_templates/ocn.iage.tavg.csh
M input_templates/ocn.sf6.tavg.csh
M source/baroclinic.F90
M source/diagnostics.F90
M source/ecosys_forcing_mod.F90
M source/passive_tracers.F90
M source/step_mod.F90
M source/tavg.F90
M source/time_management.F90
===============================================================================
Tag Creator: altuntas
Developers: jedwards, altuntas
Tag Date: 5 July 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180705
Tag Summary: Add optional NDEP modifier for POP compsets. The modifier
determines whether OCN_NDEP_DRIVER is to be set to True. Also
added latent_heat_fusion_mks field for CMIP6 vars.
Testing: aux_pop on cheyenne/intel. b4b.
M bld/build-namelist
M cime_config/config_component.xml
M source/tavg.F90
===============================================================================
Tag Creator: mlevy
Developers: mlevy
Tag Date: 14 June 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180614
Tag Summary: Update MARBL to latest version and make python scripts compatible
with python3
Testing: built a single case on my laptop (no Fortran changes, so should
be bit-for-bit with previous tag)
M Externals_POP.cfg
M MARBL_scripts/MARBL_wrappers/__init__.py
===============================================================================
Tag Creator: altuntas
Developers: altuntas
Tag Date: 31 May 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180531
Tag Summary: Remove/fix bad compsets. Get MARBL external from github repo, not from svn.
Testing: aux_pop on cheyenne (intel)
M Externals_POP.cfg
M cime_config/config_compsets.xml
===============================================================================
Tag Creator: mlevy
Developers: mlevy, klindsay
Tag Date: 14 May 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180514
Tag Summary: Merge latest marbl_dev branch tag (n92) onto trunk
1) POP changes
- Running mean saved state comes from same restart file as
ecosys base tracers, not ciso
- build-namelist checks value of CPL_I2O_PER_CAT and only
calls xmlchange if needed
- Better pe layouts on hobart, remove references to yellowstone
in config_pes.xml
- Add gx1v7 test to hobart_nag aux_pop_MARBL, and add a gx3v7
with the ecosystem on to prealpha (also hobart_nag)
- performance_eval test works with ecosystem on
- New river nutrient input file for gx3v7 to be consistent with
mapping files created April 30
2) MARBL changes
- New calcToFloor diagnostic
Testing: aux_pop on cheyenne (intel), aux_pop_MARBL on hobart (nag, intel,
and pgi)
- all gx3v7 tests with ecosystem on fail NLCOMP and BASELINE due
to new river nutrient input file
- all gx3v7 tests on hobart fail NLCOMP and BASELINE due to new
pe layout (so reverting river nutrient input will not be b4b
on that machine)
- gx1v7 hobart_intel test does not successfully run. PGI does
run and nag has ~50% success rate (resubmitting failed nag
test usually results in success)
- all other tests pass
M Externals_POP.cfg
M bld/build-namelist
M bld/namelist_files/namelist_defaults_pop.xml
M cime_config/config_pes.xml
M cime_config/testdefs/testlist_pop.xml
M cime_config/testdefs/testmods_dirs/pop/performance_eval/user_nl_marbl
M source/ecosys_driver.F90
A + source/ecosys_running_mean_saved_state_mod.F90
M source/ecosys_tracers_and_saved_state_mod.F90
===============================================================================
Tag Creator: altuntas
Developers: youngsun, dennis
Tag Date: 12 May 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180512
Tag Summary: Update to POP's halo update that improves model performance.
M mpi/POP_HaloMod.F90
Testing: aux_pop and aux_pop_tripole on cheyenne (intel). b4b
===============================================================================
Tag Creator: altuntas
Developers: altuntas
Tag Date: 01 May 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180501
Tag Summary: - debug tidal_mixing module for cases where ltidal_mixing is false by default.
- print error msg if pop decomp not set for the ocn grid.
- add tx0.1v3 size to generate_pop_decomp.xml.
- add/change tx0.1v3 namelist defaults.
- update default nox_flux_monthly_input and nhy_flux_monthly_input
- add new test suite: aux_pop_tripole
- add new compsets for high-res testing: C_HR, C_JRA, C_JRA_HR, GIAF_HR
- unset verbose ocn.vmix.tavg.csh to prevent build-namelist printing the entire script
Testing: aux_pop on cheyenne (intel). bit-for-bit except ECO
aux_pop_tripole
===============================================================================
Tag Creator: altuntas
Developers: altuntas
Tag Date: 30 Apr 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180430
Tag Summary: add model_doi_url. unsuppress error msg from build-namelist
Testing: aux_pop on cheyenne (intel). bit-for-bit
M cime_config/buildcpp
M cime_config/buildnml
M drivers/cpl/ocn_comp_mct.F90
M source/constants.F90
M source/tavg.F90
===============================================================================
Tag Creator: mlevy
Developers: mlevy, klindsay
Tag Date: 27 Apr 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180427
Tag Summary: Merge latest marbl_dev branch tag (n87) onto trunk
1) POP changes
- Fix units of U10_SQR in diagnostics
- Change ciso_init_tracer_ext to account for changes from
zoo1[34]C -> zootot1[34]C in MARBL tracer name
- clean up use of ecosys_cfg hash in build-namelist, and
suppress ciso namelist variables from non-ciso runs
- only write about successful marbl_in read from master_task
2) MARBL changes
- only compute nhx_surface_emis if lcompute_nhx_surface_emis
is .true. otherwise return zero (if requested)
- replace several 3D diagnostic fields with surface values and
weighted average over 100m (full 3D fields available still
but not included in default diagnostics)
- Rename zoo1[34]C to zootot1[34]C (in general, use zootot for
all occurences of zoo in marbl_ciso_mod.F90)
- make caco3_bury_thres_omega_calc a tunable parameter
- increase Jint_Ctot_thres_molpm2pyr by order of magnitude
- Introduce new DOP_loss_P_bal to avoid Jint_Ptot inbalance
when very small P:C ratio leads to POP%prod < 0
Testing: aux_pop on cheyenne (intel)
* NLCOMP failures for all ecosys tests (ciso variables changed
and non-ciso tests no longer include ciso variables)
* BASELINE failures for some ecosys tests
- ERI.T62_g17.C1850ECO.cheyenne_intel.pop-ecosys has O(1e-8)
changes due to negative values of POP%prod far from zero
being changed to zero
- Other tests have round-off level changes due to negative
values of POP%prod close to zero being changed to zero
aux_pop_MARBL on hobart (nag, intel, pgi)
* no comparison to baselines but verified that model builds
and runs with these compilers.
M Externals_POP.cfg
M MARBL_scripts/MARBL_wrappers/POP_ecosys_diagnostics.py
M bld/build-namelist
M bld/namelist_files/namelist_defaults_pop.xml
M source/ecosys_driver.F90
M source/forcing.F90
===============================================================================
Tag Creator: altuntas
Developers: altuntas
Tag Date: 19 Apr 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180419
Tag Summary: add testlist version to testlist_pop
Testing: aux_pop on cheyenne/intel. bfb
M cime_config/testdefs/testlist_pop.xml
===============================================================================
Tag Creator: altuntas
Developers: altuntas, klindsay
Tag Date: 12 Apr 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180412
Tag Summary: update to testlist v.2 and CVMix v0.90.
- update from testlist v.1 (phased out as of cime5.4.0-alpha.25) to v.2
- correct exp_hab_zetar allocation both in CVMix and POP.
- bugfix for enable START_DATE on last day of month or year. (klindsay)
Testing: aux_pop on cheyenne (intel). bit-for-bit
M Externals_POP.cfg
M cime_config/testdefs/testlist_pop.xml
M drivers/cpl/ocn_comp_mct.F90
M source/vmix_kpp.F90
===============================================================================
Tag Creator: mlevy
Developers: mlevy, klindsay
Tag Date: 6 Apr 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180406
Tag Summary: Merge latest marbl_dev branch tag (n82) onto trunk
1) POP changes
- atm D14C default values use CMIP6 lat_band values
- improve how marbl_in is read / passed to MARBL
- PHYS-CYCLE compset works now, added ECO-PHYS-CYCLE option
as well
- updated some gx1v7 initial conditions which were out of
sync with gx1v6
- Added box_atm_trace_gas to use box model for atm_co2
- implemented fe_bioavail fix
- update to MARBL 0.28.5
2) MARBL changes
- fix bug so ALK restoring is applied
- Use in situ temperature rather than potential
- Add some divide-by-0 checks
- Fix denominator of POP_bury_coeff
- Change kinetic fraction during gas transfer to match CMIP6
- MARBL now tells POP what diagnostics to include in tavg_contents
- Introduce more carbon diagnostics (some fluxes replaced with
vertical integrals in default settings)
- DO{13,14}C -> DO{13,14}Ctot to because they represent
semi-labile + refractory
- MARBL aborts if mass balance conservation is violated
(users no longer need to inspect vertical integrals in
diagnostic output)
- new tunings to go with fe_bioavail fix
Also fixed bugs introduced in
Testing: aux_pop on cheyenne (intel)
* NLCOMP failures for all ecosys tests and all abio tests
* BASELINE failures for the same, except the non-ecosys abio_transient
test is bit-for-bit
aux_pop_MARBL on hobart (nag, intel, pgi)
* no comparison to baselines since we expect all tests to fail,
just verified that model builds and runs with these
compilers.
M Externals.cfg
M Externals_POP.cfg
A + MARBL_scripts
M bld/build-namelist
M bld/namelist_files/namelist_defaults_pop.xml
M bld/namelist_files/namelist_definition_pop.xml
D cime_config/MARBL_settings_wrapper
D cime_config/MARBL_settings_wrapper/MARBL_settings.py
D cime_config/MARBL_settings_wrapper/__init__.py
M cime_config/buildcpp
M cime_config/buildnml
M cime_config/config_component.xml
M cime_config/config_compsets.xml
M cime_config/testdefs/testlist_pop.xml
A + cime_config/testdefs/testmods_dirs/pop/ecosys_box_atm_co2
M drivers/cpl/ocn_import_export.F90
M externals/manage_externals/.git/index
D input_templates/ocn.ciso.tavg.csh
M input_templates/ocn.ecosys.tavg.csh
M input_templates/ocn.vmix.tavg.csh
M source/abio_dic_dic14_mod.F90
A + source/box_atm_trace_gas_mod.F90
M source/c14_atm_forcing_mod.F90
A + source/ecosys_diagnostics_operators_mod.F90
M source/ecosys_driver.F90
M source/ecosys_forcing_mod.F90
A + source/ecosys_forcing_saved_state_mod.F90
M source/ecosys_tavg.F90
M source/ecosys_tracers_and_saved_state_mod.F90
M source/forcing.F90
M source/forcing_coupled.F90
M source/forcing_fields.F90
M source/passive_tracers.F90
M source/restart.F90
M source/running_mean_mod.F90
M source/tavg.F90
M source/tidal_mixing.F90
A + source/utils_mod.F90
M source/vmix_kpp.F90
===============================================================================
Tag Creator: altuntas
Developers: altuntas
Tag Date: 05 Apr 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180405
Tag Summary: Tidal PBC, JRA forcing updates, update testlist, correct unit
- Enable default tidal mixing parameterization (Jayne et al.) with partial bottom cells
(Sourcemods from gokhan, adapted to new tidal mixing module)
- JRA forcing updates:
* new init_ts_file, sfwf_filename for gx1v7 for both JRA and CORE2
* sfwf restoring set to 1 yr for gx1v7 by default for both JRA and CORE2
* new ebm_param_filename for gx1v7 JRA (CORE2 unchanged)
- Testlist updates:
* all bluewaters and eos tests removed. (prealpha and prebeta)
* added JRA tests to aux_pop and prebeta
- Correct tavg_SST2 unit
Testing: - aux_pop on cheyenne/intel. all except gx1v7 bit for bit. gx1v7 differs due to new
ic and sfwf files
- G.TL319_t13.startup two-month smoke test for tidal PBC
M bld/build-namelist
M bld/namelist_files/namelist_defaults_pop.xml
M cime_config/testdefs/testlist_pop.xml
? manage_externals.log
M source/baroclinic.F90
M source/tidal_mixing.F90
M source/vmix_kpp.F90
===============================================================================
Tag Creator: altuntas
Developers: njn01
Tag Date: 22 Mar 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180322
Tag Summary: add new tidal mixing methods, options, variables, energy datasets
- tidal mixing methods: jayne, polzin, schmittner
- Changed initialization calling sequences and split init_tidal_mixing into two routines.
- CVMix changes. (added Schmittner)
- New Geothermal options, variables, options.
Testing: aux_pop on cheyenne (intel)
M Externals_POP.cfg
M bld/build-namelist
M bld/namelist_files/namelist_defaults_pop.xml
M bld/namelist_files/namelist_definition_pop.xml
A input_templates/ocn.base.tavg.csh.nstep
A input_templates/ocn.vmix.tavg.csh
M source/baroclinic.F90
M source/budget_diagnostics.F90
A source/geoheatflux.F90
M source/initial.F90
M source/niw_mixing.F90
M source/restart.F90
M source/step_mod.F90
M source/tavg.F90
M source/tidal_mixing.F90
M source/time_management.F90
M source/vertical_mix.F90
M source/vmix_kpp.F90
===============================================================================
Tag Creator: altuntas
Developers: altuntas
Tag Date: 16 Feb 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180216
Tag Summary: add tests in a new aux_cime_baselines category
Testing: ran the new test category (with 4 new SMS tests). all pass.
M cime_config/testdefs/testlist_pop.xml
===============================================================================
Tag Creator: mlevy
Developers: mlevy
Tag Date: 5 Feb 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180205
Tag Summary: Use manage_externals to get CVMix and MARBL rather than
svn:externals (see README_EXTERNALS for details)
Testing: Ensure code still builds and runs with new externals
M .
A Externals.cfg
A Externals_POP.cfg
A README_EXTERNALS
D SVN_EXTERNAL_DIRECTORIES
A externals
A externals/manage_externals
A externals/manage_externals/.dir_locals.el
A externals/manage_externals/.git
A externals/manage_externals/.git/HEAD
A externals/manage_externals/.git/branches
A externals/manage_externals/.git/config
A externals/manage_externals/.git/description
A externals/manage_externals/.git/hooks
A externals/manage_externals/.git/hooks/applypatch-msg.sample
A externals/manage_externals/.git/hooks/commit-msg.sample
A externals/manage_externals/.git/hooks/post-update.sample
A externals/manage_externals/.git/hooks/pre-applypatch.sample
A externals/manage_externals/.git/hooks/pre-commit.sample
A externals/manage_externals/.git/hooks/pre-push.sample
A externals/manage_externals/.git/hooks/pre-rebase.sample
A externals/manage_externals/.git/hooks/pre-receive.sample
A externals/manage_externals/.git/hooks/prepare-commit-msg.sample
A externals/manage_externals/.git/hooks/update.sample
A externals/manage_externals/.git/index
A externals/manage_externals/.git/info
A externals/manage_externals/.git/info/exclude
A externals/manage_externals/.git/logs
A externals/manage_externals/.git/logs/HEAD
A externals/manage_externals/.git/logs/refs
A externals/manage_externals/.git/logs/refs/heads
A externals/manage_externals/.git/logs/refs/heads/master
A externals/manage_externals/.git/logs/refs/remotes
A externals/manage_externals/.git/logs/refs/remotes/origin
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A externals/manage_externals/.github
A externals/manage_externals/.github/ISSUE_TEMPLATE.md
A externals/manage_externals/.github/PULL_REQUEST_TEMPLATE.md
A externals/manage_externals/.gitignore
A externals/manage_externals/.travis.yml
A externals/manage_externals/LICENSE.txt
A externals/manage_externals/README.md
A externals/manage_externals/README_FIRST
A externals/manage_externals/checkout_externals
A externals/manage_externals/manic
A externals/manage_externals/manic/__init__.py
A externals/manage_externals/manic/checkout.py
A externals/manage_externals/manic/externals_description.py
A externals/manage_externals/manic/externals_status.py
A externals/manage_externals/manic/global_constants.py
A externals/manage_externals/manic/repository.py
A externals/manage_externals/manic/repository_factory.py
A externals/manage_externals/manic/repository_git.py
A externals/manage_externals/manic/repository_svn.py
A externals/manage_externals/manic/sourcetree.py
A externals/manage_externals/manic/utils.py
A externals/manage_externals/test
A externals/manage_externals/test/.coveragerc
A externals/manage_externals/test/.gitignore
A externals/manage_externals/test/.pylint.rc
A externals/manage_externals/test/Makefile
A externals/manage_externals/test/README.md
A externals/manage_externals/test/doc
A externals/manage_externals/test/doc/.gitignore
A externals/manage_externals/test/doc/Makefile
A externals/manage_externals/test/doc/conf.py
A externals/manage_externals/test/doc/develop.rst
A externals/manage_externals/test/doc/index.rst
A externals/manage_externals/test/doc/testing.rst
A externals/manage_externals/test/repos
A externals/manage_externals/test/repos/container.git
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A externals/manage_externals/test/repos/simple-ext-fork.git/refs/tags/abandoned-feature
A externals/manage_externals/test/repos/simple-ext-fork.git/refs/tags/forked-feature-v1
A externals/manage_externals/test/repos/simple-ext.git
A externals/manage_externals/test/repos/simple-ext.git/HEAD
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A externals/manage_externals/test/repos/simple-ext.git/objects/0b/15e8af3d4615b42314216efeae3fff184046a8
A externals/manage_externals/test/repos/simple-ext.git/objects/11
A externals/manage_externals/test/repos/simple-ext.git/objects/11/a76e3d9a67313dec7ce1230852ab5c86352c5c
A externals/manage_externals/test/repos/simple-ext.git/objects/36
A externals/manage_externals/test/repos/simple-ext.git/objects/36/418b4e5665956a90725c9a1b5a8e551c5f3d48
A externals/manage_externals/test/repos/simple-ext.git/objects/41
A externals/manage_externals/test/repos/simple-ext.git/objects/41/1de5d96ee418c1c55f3e96e6e6e7c06bb95801
A externals/manage_externals/test/repos/simple-ext.git/objects/9b
A externals/manage_externals/test/repos/simple-ext.git/objects/9b/75494003deca69527bb64bcaa352e801611dd2
A externals/manage_externals/test/repos/simple-ext.git/objects/a2
A externals/manage_externals/test/repos/simple-ext.git/objects/a2/2a5da9119328ea6d693f88861457c07e14ac04
A externals/manage_externals/test/repos/simple-ext.git/objects/c5
A externals/manage_externals/test/repos/simple-ext.git/objects/c5/b315915742133dbdfbeed0753e481b55c1d364
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A externals/manage_externals/test/repos/simple-ext.git/refs/heads
A externals/manage_externals/test/repos/simple-ext.git/refs/heads/feature2
A externals/manage_externals/test/repos/simple-ext.git/refs/heads/master
A externals/manage_externals/test/repos/simple-ext.git/refs/tags
A externals/manage_externals/test/repos/simple-ext.git/refs/tags/tag1
A externals/manage_externals/test/requirements.txt
A externals/manage_externals/test/test_sys_checkout.py
A externals/manage_externals/test/test_unit_externals_description.py
A externals/manage_externals/test/test_unit_externals_status.py
A externals/manage_externals/test/test_unit_repository.py
A externals/manage_externals/test/test_unit_repository_git.py
A externals/manage_externals/test/test_unit_repository_svn.py
A externals/manage_externals/test/test_unit_utils.py
===============================================================================
Tag Creator: mlevy
Developers: mlevy
Tag Date: 3 Jan 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180103
Tag Summary: Instead of bringing in just src/shared from CVMix (as
source/cvmix), svn:externals brings in full CVMix repository (as
externals/CVMix). This means the buildlib script needs to look in
new location to copy CVMix files to bld/ directory.
Testing: Ensure code still builds and runs with CVMix in new location
M .
M SVN_EXTERNAL_DIRECTORIES
M cime_config/buildlib
===============================================================================
Tag Creator: altuntas
Developers: altuntas
Tag Date: 29 Dec 2017
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20171229
Tag Summary: Incorporated the changes from branches/cesm_pop_2_1_20171214_marblbld
The change is because "the way that marbl_nt is currently handled in
pop's buildcpp and buildnml is incompatible with a new version of CIME..."
-jedwards. Also, added the following tavg fields for gx1v7 (for CMIP6):
SSS2, HMXL_DR_2, XMXL_DR, and TMXL_DR, and removed HMXL_2.
Replaced kind=8 in time_management with POP_i8.
Testing: aux_pop. bit for bit
M cime_config/buildcpp
M cime_config/buildnml
M cime_config/config_component.xml
X externals
M input_templates/gx1v7_tavg_contents
M source/baroclinic.F90
X source/cvmix
M source/diagnostics.F90
M source/time_management.F90
===============================================================================
Tag Creator: altuntas
Developers: altuntas