{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":241122727,"defaultBranch":"master","name":"HAPO-G","ownerLogin":"institut-de-genomique","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2020-02-17T14:06:58.000Z","ownerAvatar":"https://github.com/avatars/u/6636916?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1711101383.0","currentOid":""},"activityList":{"items":[{"before":"692469b76850cf8dfee89c49e45471d261eec085","after":"6272b8fb09d9df8cc88f9f90cd20a406217d46d3","ref":"refs/heads/master","pushedAt":"2024-03-22T09:52:38.000Z","pushType":"pr_merge","commitsCount":5,"pusher":{"login":"bistace","name":"Benjamin Istace","path":"/bistace","primaryAvatarUrl":"https://github.com/avatars/u/7983565?s=80&v=4"},"commit":{"message":"Merge pull request #36 from institut-de-genomique/rm_secondary\n\nAutomatically filter secondary alignments from user-generated BAMs","shortMessageHtmlLink":"Merge pull request #36 from institut-de-genomique/rm_secondary"}},{"before":"f4b6f43a746e5c52913fb58c00ad3db70768968b","after":"187411be237d9ac9ee0f505778534ab63954eae8","ref":"refs/heads/rm_secondary","pushedAt":"2024-03-22T09:33:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bistace","name":"Benjamin Istace","path":"/bistace","primaryAvatarUrl":"https://github.com/avatars/u/7983565?s=80&v=4"},"commit":{"message":"Bump version","shortMessageHtmlLink":"Bump version"}},{"before":"0888f7b97a83a01421329bf06f4c0c5317156796","after":"f4b6f43a746e5c52913fb58c00ad3db70768968b","ref":"refs/heads/rm_secondary","pushedAt":"2024-03-22T08:45:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bistace","name":"Benjamin Istace","path":"/bistace","primaryAvatarUrl":"https://github.com/avatars/u/7983565?s=80&v=4"},"commit":{"message":"Correct a typo in BWA log","shortMessageHtmlLink":"Correct a typo in BWA log"}},{"before":"1e619449e6848038e4b4528e47089520777f3efe","after":"0888f7b97a83a01421329bf06f4c0c5317156796","ref":"refs/heads/rm_secondary","pushedAt":"2024-03-22T08:43:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bistace","name":"Benjamin Istace","path":"/bistace","primaryAvatarUrl":"https://github.com/avatars/u/7983565?s=80&v=4"},"commit":{"message":"Output bam","shortMessageHtmlLink":"Output bam"}},{"before":null,"after":"1e619449e6848038e4b4528e47089520777f3efe","ref":"refs/heads/rm_secondary","pushedAt":"2024-03-22T08:38:04.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"bistace","name":"Benjamin Istace","path":"/bistace","primaryAvatarUrl":"https://github.com/avatars/u/7983565?s=80&v=4"},"commit":{"message":"Automatically filter secondary alignments from user-generated BAMs","shortMessageHtmlLink":"Automatically filter secondary alignments from user-generated BAMs"}},{"before":"4a0713f4166b5eaa235cc7d9b3a56bb684d07c8b","after":"692469b76850cf8dfee89c49e45471d261eec085","ref":"refs/heads/master","pushedAt":"2024-03-22T07:51:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bistace","name":"Benjamin Istace","path":"/bistace","primaryAvatarUrl":"https://github.com/avatars/u/7983565?s=80&v=4"},"commit":{"message":"Add that the secondary=no option of Minimap2 should be used","shortMessageHtmlLink":"Add that the secondary=no option of Minimap2 should be used"}},{"before":"fd38577dbee8f2f4c2f2118fef91e32b54318e5c","after":"4a0713f4166b5eaa235cc7d9b3a56bb684d07c8b","ref":"refs/heads/master","pushedAt":"2024-03-22T07:45:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bistace","name":"Benjamin Istace","path":"/bistace","primaryAvatarUrl":"https://github.com/avatars/u/7983565?s=80&v=4"},"commit":{"message":"Add the secondary=no hint for minimap2","shortMessageHtmlLink":"Add the secondary=no hint for minimap2"}},{"before":"cfdc9b7ac584eb709f2fed5ccb239ca88f7c15a2","after":"fd38577dbee8f2f4c2f2118fef91e32b54318e5c","ref":"refs/heads/master","pushedAt":"2023-11-21T14:05:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bistace","name":"Benjamin Istace","path":"/bistace","primaryAvatarUrl":"https://github.com/avatars/u/7983565?s=80&v=4"},"commit":{"message":"Reduce time between checks #34","shortMessageHtmlLink":"Reduce time between checks #34"}},{"before":"4c1b57fcd62c34b467cfed36af44e949338fb8bc","after":"cfdc9b7ac584eb709f2fed5ccb239ca88f7c15a2","ref":"refs/heads/master","pushedAt":"2023-10-11T07:11:03.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"bistace","name":"Benjamin Istace","path":"/bistace","primaryAvatarUrl":"https://github.com/avatars/u/7983565?s=80&v=4"},"commit":{"message":"Merge pull request #35 from institut-de-genomique/34-error-with-threads-1-persisting\n\n34 error with threads 1 persisting","shortMessageHtmlLink":"Merge pull request #35 from institut-de-genomique/34-error-with-threa…"}},{"before":"c316efc11515d43bbd4ac196d349835904db7bdd","after":"c841d8d72bda3c242d6bd3c88dee2d19a3d17970","ref":"refs/heads/34-error-with-threads-1-persisting","pushedAt":"2023-10-11T06:46:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bistace","name":"Benjamin Istace","path":"/bistace","primaryAvatarUrl":"https://github.com/avatars/u/7983565?s=80&v=4"},"commit":{"message":"Correct the path to the assembly in case of --hapog_threads 1","shortMessageHtmlLink":"Correct the path to the assembly in case of --hapog_threads 1"}},{"before":"e4b090052657e95894726294a47a2457d7c31325","after":"c316efc11515d43bbd4ac196d349835904db7bdd","ref":"refs/heads/34-error-with-threads-1-persisting","pushedAt":"2023-10-11T06:27:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bistace","name":"Benjamin Istace","path":"/bistace","primaryAvatarUrl":"https://github.com/avatars/u/7983565?s=80&v=4"},"commit":{"message":"check if hapog_threads is more than one instead of global threads","shortMessageHtmlLink":"check if hapog_threads is more than one instead of global threads"}},{"before":"4c1b57fcd62c34b467cfed36af44e949338fb8bc","after":"e4b090052657e95894726294a47a2457d7c31325","ref":"refs/heads/34-error-with-threads-1-persisting","pushedAt":"2023-10-11T06:09:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bistace","name":"Benjamin Istace","path":"/bistace","primaryAvatarUrl":"https://github.com/avatars/u/7983565?s=80&v=4"},"commit":{"message":"Link input genome only if we did not reformat headers","shortMessageHtmlLink":"Link input genome only if we did not reformat headers"}},{"before":null,"after":"4c1b57fcd62c34b467cfed36af44e949338fb8bc","ref":"refs/heads/34-error-with-threads-1-persisting","pushedAt":"2023-10-11T05:58:21.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"bistace","name":"Benjamin Istace","path":"/bistace","primaryAvatarUrl":"https://github.com/avatars/u/7983565?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"74d2b81aeb677e0a1bd9243f63e6b866cf7a7599","after":"4c1b57fcd62c34b467cfed36af44e949338fb8bc","ref":"refs/heads/master","pushedAt":"2023-09-18T05:57:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bistace","name":"Benjamin Istace","path":"/bistace","primaryAvatarUrl":"https://github.com/avatars/u/7983565?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"86dcd27eaf1128f4855a62e4db3561e8e75b69fc","after":"74d2b81aeb677e0a1bd9243f63e6b866cf7a7599","ref":"refs/heads/master","pushedAt":"2023-09-18T05:56:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bistace","name":"Benjamin Istace","path":"/bistace","primaryAvatarUrl":"https://github.com/avatars/u/7983565?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"37290634a5a14338a7557aaf6dd3c557fb1b625c","after":"86dcd27eaf1128f4855a62e4db3561e8e75b69fc","ref":"refs/heads/master","pushedAt":"2023-09-18T05:55:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bistace","name":"Benjamin Istace","path":"/bistace","primaryAvatarUrl":"https://github.com/avatars/u/7983565?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"6d2be048eb4c9acb19c0d178eb733998e30679a1","after":"37290634a5a14338a7557aaf6dd3c557fb1b625c","ref":"refs/heads/master","pushedAt":"2023-09-18T05:54:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bistace","name":"Benjamin Istace","path":"/bistace","primaryAvatarUrl":"https://github.com/avatars/u/7983565?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"165ce27eae5aeeabc8bae6ff5d1ce3087b5d9abc","after":"6d2be048eb4c9acb19c0d178eb733998e30679a1","ref":"refs/heads/master","pushedAt":"2023-09-07T11:23:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bistace","name":"Benjamin Istace","path":"/bistace","primaryAvatarUrl":"https://github.com/avatars/u/7983565?s=80&v=4"},"commit":{"message":"Update README.md\n\nExplain what output files contain","shortMessageHtmlLink":"Update README.md"}},{"before":"5b675100647b3458f8c64d215c39222e7a631229","after":"165ce27eae5aeeabc8bae6ff5d1ce3087b5d9abc","ref":"refs/heads/master","pushedAt":"2023-09-07T07:57:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bistace","name":"Benjamin Istace","path":"/bistace","primaryAvatarUrl":"https://github.com/avatars/u/7983565?s=80&v=4"},"commit":{"message":"Bump version","shortMessageHtmlLink":"Bump version"}},{"before":"e1ea831ce1b0fea05aaa5ae6f843b5b406ae4bc0","after":"5b675100647b3458f8c64d215c39222e7a631229","ref":"refs/heads/master","pushedAt":"2023-09-07T07:57:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bistace","name":"Benjamin Istace","path":"/bistace","primaryAvatarUrl":"https://github.com/avatars/u/7983565?s=80&v=4"},"commit":{"message":"Bump version","shortMessageHtmlLink":"Bump version"}},{"before":"5e038b24addef07734f0587395f65f6851b1c7b6","after":"e1ea831ce1b0fea05aaa5ae6f843b5b406ae4bc0","ref":"refs/heads/master","pushedAt":"2023-09-06T07:32:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bistace","name":"Benjamin Istace","path":"/bistace","primaryAvatarUrl":"https://github.com/avatars/u/7983565?s=80&v=4"},"commit":{"message":"Delete .vscode directory","shortMessageHtmlLink":"Delete .vscode directory"}},{"before":"fd79d243af0f7a27463d0f02f79bf2d8b22fe4e8","after":"5e038b24addef07734f0587395f65f6851b1c7b6","ref":"refs/heads/master","pushedAt":"2023-09-06T05:39:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bistace","name":"Benjamin Istace","path":"/bistace","primaryAvatarUrl":"https://github.com/avatars/u/7983565?s=80&v=4"},"commit":{"message":"Tentative fix for #31","shortMessageHtmlLink":"Tentative fix for #31"}},{"before":"1b0757237b361e339143eced814b6346f4c39723","after":"fd79d243af0f7a27463d0f02f79bf2d8b22fe4e8","ref":"refs/heads/master","pushedAt":"2023-09-05T06:53:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bistace","name":"Benjamin Istace","path":"/bistace","primaryAvatarUrl":"https://github.com/avatars/u/7983565?s=80&v=4"},"commit":{"message":"Fix ResourceWarnings","shortMessageHtmlLink":"Fix ResourceWarnings"}},{"before":"f7401dbd210c86af9a7987a2f44b55a2009ef308","after":"1b0757237b361e339143eced814b6346f4c39723","ref":"refs/heads/master","pushedAt":"2023-09-05T06:15:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bistace","name":"Benjamin Istace","path":"/bistace","primaryAvatarUrl":"https://github.com/avatars/u/7983565?s=80&v=4"},"commit":{"message":"Tentative fix for RessourceWarning in python3.8","shortMessageHtmlLink":"Tentative fix for RessourceWarning in python3.8"}},{"before":"922d8cd5bb40a9e2f4f4a60c352c4503857ae139","after":"f7401dbd210c86af9a7987a2f44b55a2009ef308","ref":"refs/heads/master","pushedAt":"2023-09-05T05:41:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bistace","name":"Benjamin Istace","path":"/bistace","primaryAvatarUrl":"https://github.com/avatars/u/7983565?s=80&v=4"},"commit":{"message":"Convert hapog threads cmd line option to int","shortMessageHtmlLink":"Convert hapog threads cmd line option to int"}},{"before":"bcc23cfeaa0a920b4bc5978dfeab483cd3355782","after":"922d8cd5bb40a9e2f4f4a60c352c4503857ae139","ref":"refs/heads/master","pushedAt":"2023-09-04T12:51:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bistace","name":"Benjamin Istace","path":"/bistace","primaryAvatarUrl":"https://github.com/avatars/u/7983565?s=80&v=4"},"commit":{"message":"Ignore ResourceWarning","shortMessageHtmlLink":"Ignore ResourceWarning"}},{"before":"0e32c26e16b595a76660e0f0aa83fcda78a01ad4","after":"bcc23cfeaa0a920b4bc5978dfeab483cd3355782","ref":"refs/heads/master","pushedAt":"2023-09-04T12:23:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bistace","name":"Benjamin Istace","path":"/bistace","primaryAvatarUrl":"https://github.com/avatars/u/7983565?s=80&v=4"},"commit":{"message":"Fix file unclosed #29","shortMessageHtmlLink":"Fix file unclosed #29"}},{"before":"981f77030f89c59d8d72a3df8cf3ac8e1ec4e7ec","after":"0e32c26e16b595a76660e0f0aa83fcda78a01ad4","ref":"refs/heads/master","pushedAt":"2023-09-04T11:31:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bistace","name":"Benjamin Istace","path":"/bistace","primaryAvatarUrl":"https://github.com/avatars/u/7983565?s=80&v=4"},"commit":{"message":"New options for samtools memory and Hapo-G max number of subprocess #29","shortMessageHtmlLink":"New options for samtools memory and Hapo-G max number of subprocess #29"}}],"hasNextPage":false,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"Y3Vyc29yOnYyOpK7MjAyNC0wMy0yMlQwOTo1MjozOC4wMDAwMDBazwAAAAQcl-hh","startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wMy0yMlQwOTo1MjozOC4wMDAwMDBazwAAAAQcl-hh","endCursor":"Y3Vyc29yOnYyOpK7MjAyMy0wOS0wNFQxMTozMToxMi4wMDAwMDBazwAAAAN43Olf"}},"title":"Activity · institut-de-genomique/HAPO-G"}