diff --git a/lib/init.js b/lib/init.js
index 0a8d6f64dd..1bee73bbe0 100644
--- a/lib/init.js
+++ b/lib/init.js
@@ -47,7 +47,6 @@ async function initConfig(languagesInput, queriesInput, packsInput, registriesIn
 }
 exports.initConfig = initConfig;
 async function runInit(codeql, config, sourceRoot, processName, processLevel, featureFlags, logger) {
-    var _a, _b;
     fs.mkdirSync(config.dbLocation, { recursive: true });
     try {
         if (await (0, util_1.codeQlVersionAbove)(codeql, codeql_1.CODEQL_VERSION_NEW_TRACING)) {
@@ -62,24 +61,41 @@ async function runInit(codeql, config, sourceRoot, processName, processLevel, fe
         }
     }
     catch (e) {
-        // Handle the situation where init is called twice
-        // for the same database in the same job.
-        if (e instanceof Error &&
-            ((_a = e.message) === null || _a === void 0 ? void 0 : _a.includes("Refusing to create databases")) &&
-            e.message.includes("exists and is not an empty directory.")) {
-            throw new util.UserError(`Is the "init" action called twice in the same job? ${e.message}`);
-        }
-        else if (e instanceof Error &&
-            ((_b = e.message) === null || _b === void 0 ? void 0 : _b.includes("is not compatible with this CodeQL CLI"))) {
-            throw new util.UserError(e.message);
-        }
-        else {
-            throw e;
-        }
+        throw processError(e);
     }
     return await (0, tracer_config_1.getCombinedTracerConfig)(config, codeql, await util.isGoExtractionReconciliationEnabled(featureFlags), logger);
 }
 exports.runInit = runInit;
+/**
+ * Possibly convert this error into a UserError in order to avoid
+ * counting this error towards our internal error budget.
+ *
+ * @param e The error to possibly convert to a UserError.
+ *
+ * @returns A UserError if the error is a known error that can be
+ *         attributed to the user, otherwise the original error.
+ */
+function processError(e) {
+    var _a, _b, _c;
+    if (!(e instanceof Error)) {
+        return e;
+    }
+    if (
+    // Init action called twice
+    ((_a = e.message) === null || _a === void 0 ? void 0 : _a.includes("Refusing to create databases")) &&
+        e.message.includes("exists and is not an empty directory.")) {
+        return new util.UserError(`Is the "init" action called twice in the same job? ${e.message}`);
+    }
+    if (
+    // Version of CodeQL CLI is incompatible with this version of the CodeQL Action
+    ((_b = e.message) === null || _b === void 0 ? void 0 : _b.includes("is not compatible with this CodeQL CLI")) ||
+        (
+        // Expected source location for database creation does not exist
+        (_c = e.message) === null || _c === void 0 ? void 0 : _c.includes("Invalid source root"))) {
+        return new util.UserError(e.message);
+    }
+    return e;
+}
 // Runs a powershell script to inject the tracer into a parent process
 // so it can tracer future processes, hopefully including the build process.
 // If processName is given then injects into the nearest parent process with
diff --git a/lib/init.js.map b/lib/init.js.map
index 86234bcba8..3e704e76d2 100644
--- a/lib/init.js.map
+++ b/lib/init.js.map
@@ -1 +1 @@
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\ No newline at end of file
+{"version":3,"file":"init.js","sourceRoot":"","sources":["../src/init.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;AAAA,uCAAyB;AACzB,2CAA6B;AAE7B,yEAA2D;AAC3D,kEAAoD;AAEpD,gEAAkD;AAElD,qCAA2E;AAC3E,4DAA8C;AAI9C,mDAAwE;AACxE,6CAA+B;AAC/B,iCAA4C;AAErC,KAAK,UAAU,UAAU,CAC9B,SAA6B,EAC7B,UAA4B,EAC5B,OAAe,EACf,OAA2B,EAC3B,YAA0B,EAC1B,MAAc;IAEd,MAAM,CAAC,UAAU,CAAC,oBAAoB,CAAC,CAAC;IACxC,MAAM,EAAE,MAAM,EAAE,YAAY,EAAE,GAAG,MAAM,IAAA,oBAAW,EAChD,SAAS,EACT,UAAU,EACV,OAAO,EACP,OAAO,EACP,YAAY,EACZ,MAAM,EACN,IAAI,CACL,CAAC;IACF,MAAM,MAAM,CAAC,YAAY,EAAE,CAAC;IAC5B,MAAM,CAAC,QAAQ,EAAE,CAAC;IAClB,OAAO,EAAE,MAAM,EAAE,YAAY,EAAE,CAAC;AAClC,CAAC;AArBD,gCAqBC;AAEM,KAAK,UAAU,UAAU,CAC9B,cAAkC,EAClC,YAAgC,EAChC,UAA8B,EAC9B,eAAmC,EACnC,UAA8B,EAC9B,UAA8B,EAC9B,kBAA2B,EAC3B,SAAkB,EAClB,iBAAyB,EACzB,iBAAyB,EACzB,UAAyB,EACzB,OAAe,EACf,MAAc,EACd,aAAqB,EACrB,aAAiC,EACjC,UAAoC,EACpC,YAA0B,EAC1B,MAAc;IAEd,MAAM,CAAC,UAAU,CAAC,6BAA6B,CAAC,CAAC;IACjD,MAAM,MAAM,GAAG,MAAM,WAAW,CAAC,UAAU,CACzC,cAAc,EACd,YAAY,EACZ,UAAU,EACV,eAAe,EACf,UAAU,EACV,UAAU,EACV,kBAAkB,EAClB,SAAS,EACT,iBAAiB,EACjB,iBAAiB,EACjB,UAAU,EACV,OAAO,EACP,MAAM,EACN,aAAa,EACb,aAAa,EACb,UAAU,EACV,YAAY,EACZ,MAAM,CACP,CAAC;IACF,aAAa,CAAC,uBAAuB,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IACtD,MAAM,CAAC,QAAQ,EAAE,CAAC;IAClB,OAAO,MAAM,CAAC;AAChB,CAAC;AA5CD,gCA4CC;AAEM,KAAK,UAAU,OAAO,CAC3B,MAAc,EACd,MAA0B,EAC1B,UAAkB,EAClB,WAA+B,EAC/B,YAAgC,EAChC,YAA0B,EAC1B,MAAc;IAEd,EAAE,CAAC,SAAS,CAAC,MAAM,CAAC,UAAU,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;IAErD,IAAI;QACF,IAAI,MAAM,IAAA,yBAAkB,EAAC,MAAM,EAAE,mCAA0B,CAAC,EAAE;YAChE,0BAA0B;YAC1B,MAAM,MAAM,CAAC,mBAAmB,CAC9B,MAAM,EACN,UAAU,EACV,WAAW,EACX,YAAY,EACZ,YAAY,EACZ,MAAM,CACP,CAAC;SACH;aAAM;YACL,KAAK,MAAM,QAAQ,IAAI,MAAM,CAAC,SAAS,EAAE;gBACvC,yBAAyB;gBACzB,MAAM,MAAM,CAAC,YAAY,CACvB,IAAI,CAAC,qBAAqB,CAAC,MAAM,EAAE,QAAQ,CAAC,EAC5C,QAAQ,EACR,UAAU,CACX,CAAC;aACH;SACF;KACF;IAAC,OAAO,CAAC,EAAE;QACV,MAAM,YAAY,CAAC,CAAC,CAAC,CAAC;KACvB;IACD,OAAO,MAAM,IAAA,uCAAuB,EAClC,MAAM,EACN,MAAM,EACN,MAAM,IAAI,CAAC,mCAAmC,CAAC,YAAY,CAAC,EAC5D,MAAM,CACP,CAAC;AACJ,CAAC;AAzCD,0BAyCC;AAED;;;;;;;;GAQG;AACH,SAAS,YAAY,CAAC,CAAM;;IAC1B,IAAI,CAAC,CAAC,CAAC,YAAY,KAAK,CAAC,EAAE;QACzB,OAAO,CAAC,CAAC;KACV;IAED;IACE,2BAA2B;IAC3B,CAAA,MAAA,CAAC,CAAC,OAAO,0CAAE,QAAQ,CAAC,8BAA8B,CAAC;QACnD,CAAC,CAAC,OAAO,CAAC,QAAQ,CAAC,uCAAuC,CAAC,EAC3D;QACA,OAAO,IAAI,IAAI,CAAC,SAAS,CACvB,sDAAsD,CAAC,CAAC,OAAO,EAAE,CAClE,CAAC;KACH;IAED;IACE,+EAA+E;IAC/E,CAAA,MAAA,CAAC,CAAC,OAAO,0CAAE,QAAQ,CAAC,wCAAwC,CAAC;;QAC7D,gEAAgE;QAChE,MAAA,CAAC,CAAC,OAAO,0CAAE,QAAQ,CAAC,qBAAqB,CAAC,CAAA,EAC1C;QACA,OAAO,IAAI,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC;KACtC;IAED,OAAO,CAAC,CAAC;AACX,CAAC;AAED,sEAAsE;AACtE,4EAA4E;AAC5E,4EAA4E;AAC5E,6EAA6E;AAC7E,+CAA+C;AACxC,KAAK,UAAU,mBAAmB,CACvC,WAA+B,EAC/B,YAAgC,EAChC,MAA0B,EAC1B,MAAc,EACd,YAA0B;IAE1B,IAAI,MAAc,CAAC;IACnB,IAAI,WAAW,KAAK,SAAS,EAAE;QAC7B,MAAM,GAAG;;;;;;;;;;;;uCAY0B,WAAW;;8BAEpB,WAAW;;;;;;;;gDAQO,CAAC;KAC9C;SAAM;QACL,oEAAoE;QACpE,mFAAmF;QACnF,+EAA+E;QAC/E,kFAAkF;QAClF,6EAA6E;QAC7E,oFAAoF;QACpF,6CAA6C;QAC7C,YAAY,GAAG,YAAY,IAAI,CAAC,CAAC;QACjC,MAAM,GAAG;;;;;;;;4BAQe,YAAY;;;;;;;;;;;;;;;;;;;;;gDAqBQ,CAAC;KAC9C;IAED,MAAM,gBAAgB,GAAG,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,OAAO,EAAE,mBAAmB,CAAC,CAAC;IACxE,EAAE,CAAC,aAAa,CAAC,gBAAgB,EAAE,MAAM,CAAC,CAAC;IAE3C,MAAM,IAAI,UAAU,CAAC,UAAU,CAC7B,MAAM,SAAS,CAAC,SAAS,CAAC,YAAY,CAAC,EACvC;QACE,kBAAkB;QAClB,QAAQ;QACR,OAAO;QACP,gBAAgB;QAChB,IAAI,CAAC,OAAO,CACV,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,OAAO,EAAE,CAAC,EAC9B,OAAO,EACP,OAAO,EACP,YAAY,CACb;KACF,EACD,EAAE,GAAG,EAAE,EAAE,0BAA0B,EAAE,YAAY,CAAC,IAAI,EAAE,EAAE,CAC3D,CAAC,IAAI,EAAE,CAAC;AACX,CAAC;AA5FD,kDA4FC;AAEM,KAAK,UAAU,iBAAiB,CAAC,MAAc,EAAE,MAAc;IACpE,MAAM,CAAC,UAAU,CAAC,2BAA2B,CAAC,CAAC;IAE/C,MAAM,aAAa,GAAG,IAAI,CAAC,OAAO,CAAC,SAAS,EAAE,iBAAiB,CAAC,CAAC;IAEjE,IAAI;QACF,IAAI,OAAO,CAAC,QAAQ,KAAK,OAAO,EAAE;YAChC,MAAM,IAAI,UAAU,CAAC,UAAU,CAAC,MAAM,SAAS,CAAC,SAAS,CAAC,YAAY,CAAC,EAAE;gBACvE,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,mBAAmB,CAAC;aAC9C,CAAC,CAAC,IAAI,EAAE,CAAC;SACX;aAAM;YACL,MAAM,IAAI,UAAU,CAAC,UAAU,CAC7B,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,kBAAkB,CAAC,CAC7C,CAAC,IAAI,EAAE,CAAC;SACV;QACD,MAAM,MAAM,GAAG,0BAA0B,CAAC;QAC1C,IAAI,OAAO,CAAC,QAAQ,KAAK,OAAO,EAAE;YAChC,MAAM,IAAI,UAAU,CAAC,UAAU,CAAC,MAAM,SAAS,CAAC,SAAS,CAAC,IAAI,CAAC,EAAE;gBAC/D,IAAI;gBACJ,IAAI;gBACJ,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,MAAM,CAAC;gBAChC,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,OAAO,EAAE,CAAC;aAC/B,CAAC,CAAC,IAAI,EAAE,CAAC;SACX;aAAM;YACL,MAAM,IAAI,UAAU,CAAC,UAAU,CAAC,MAAM,SAAS,CAAC,SAAS,CAAC,SAAS,CAAC,EAAE;gBACpE,IAAI;gBACJ,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,MAAM,CAAC;gBAChC,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,OAAO,EAAE,CAAC;aAC/B,CAAC,CAAC,IAAI,EAAE,CAAC;SACX;KACF;IAAC,OAAO,CAAC,EAAE;QACV,MAAM,CAAC,QAAQ,EAAE,CAAC;QAClB,MAAM,CAAC,OAAO,CACZ,gFAAgF,CAAC,IAAI;YACnF,qGAAqG;YACrG,oGAAoG;YACpG,iDAAiD,CACpD,CAAC;QACF,OAAO;KACR;IACD,MAAM,CAAC,QAAQ,EAAE,CAAC;AACpB,CAAC;AAzCD,8CAyCC"}
\ No newline at end of file
diff --git a/src/init.ts b/src/init.ts
index ff8bdc615e..26d6b2ff44 100644
--- a/src/init.ts
+++ b/src/init.ts
@@ -117,24 +117,7 @@ export async function runInit(
       }
     }
   } catch (e) {
-    // Handle the situation where init is called twice
-    // for the same database in the same job.
-    if (
-      e instanceof Error &&
-      e.message?.includes("Refusing to create databases") &&
-      e.message.includes("exists and is not an empty directory.")
-    ) {
-      throw new util.UserError(
-        `Is the "init" action called twice in the same job? ${e.message}`
-      );
-    } else if (
-      e instanceof Error &&
-      e.message?.includes("is not compatible with this CodeQL CLI")
-    ) {
-      throw new util.UserError(e.message);
-    } else {
-      throw e;
-    }
+    throw processError(e);
   }
   return await getCombinedTracerConfig(
     config,
@@ -144,6 +127,42 @@ export async function runInit(
   );
 }
 
+/**
+ * Possibly convert this error into a UserError in order to avoid
+ * counting this error towards our internal error budget.
+ *
+ * @param e The error to possibly convert to a UserError.
+ *
+ * @returns A UserError if the error is a known error that can be
+ *         attributed to the user, otherwise the original error.
+ */
+function processError(e: any): Error {
+  if (!(e instanceof Error)) {
+    return e;
+  }
+
+  if (
+    // Init action called twice
+    e.message?.includes("Refusing to create databases") &&
+    e.message.includes("exists and is not an empty directory.")
+  ) {
+    return new util.UserError(
+      `Is the "init" action called twice in the same job? ${e.message}`
+    );
+  }
+
+  if (
+    // Version of CodeQL CLI is incompatible with this version of the CodeQL Action
+    e.message?.includes("is not compatible with this CodeQL CLI") ||
+    // Expected source location for database creation does not exist
+    e.message?.includes("Invalid source root")
+  ) {
+    return new util.UserError(e.message);
+  }
+
+  return e;
+}
+
 // Runs a powershell script to inject the tracer into a parent process
 // so it can tracer future processes, hopefully including the build process.
 // If processName is given then injects into the nearest parent process with