diff --git a/docs/source/examples/Hyperband-synthetic-example.ipynb b/docs/source/examples/Hyperband-synthetic-example.ipynb new file mode 100644 index 000000000..8bbfcc4ef --- /dev/null +++ b/docs/source/examples/Hyperband-synthetic-example.ipynb @@ -0,0 +1,4113 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": 1, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "'/Users/ssievert/Developer/stsievert/dask-ml/dask_ml/__init__.py'" + ] + }, + "execution_count": 1, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "from time import time\n", + "\n", + "import numpy as np\n", + "import scipy.stats as stats\n", + "import dask.array as da\n", + "\n", + "from sklearn.model_selection import train_test_split\n", + "from sklearn.linear_model import SGDClassifier\n", + "import sklearn\n", + "\n", + "import dask_ml\n", + "from dask_ml.datasets import make_classification\n", + "from dask_ml.wrappers import Incremental\n", + "from dask_ml.model_selection import HyperbandCV\n", + "import dask_searchcv\n", + "\n", + "from time import sleep\n", + "dask_ml.__file__" + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "metadata": {}, + "outputs": [], + "source": [ + "from distributed import Client, LocalCluster\n", + "procs, threads = 8, 8\n", + "num_workers = procs * threads\n", + "cluster = LocalCluster(n_workers=procs, threads_per_worker=threads)\n", + "client = Client(cluster)" + ] + }, + { + "cell_type": "code", + "execution_count": 7, + "metadata": {}, + "outputs": [], + "source": [ + "n, d = int(10e3), int(100)\n", + "X, y = make_classification(n_features=d, n_samples=n,\n", + " chunks=(n // 10, d))\n", + "classes = da.unique(y)\n", + "\n", + "kwargs = dict(loss='hinge', penalty='elasticnet',\n", + " max_iter=1.0, warm_start=True)\n", + "model = Incremental(SGDClassifier(), **kwargs)\n", + "params = {'alpha': np.logspace(-4, 0, num=1000),\n", + " 'l1_ratio': stats.uniform(0, 1),\n", + " 'average': [True, False]}\n", + "partial_fit_kwargs = {'classes': classes}\n", + "\n", + "from dask_ml.utils import ConstantFunction\n", + "model = ConstantFunction()\n", + "params = {'value': stats.uniform(0, 1)}\n", + "sleep = 0.1\n", + "partial_fit_kwargs = {'sleep': sleep}" + ] + }, + { + "cell_type": "code", + "execution_count": 8, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Fastest possible time = 2.2171875s\n" + ] + } + ], + "source": [ + "n, d = int(1000), int(200)\n", + "X, y = make_classification(n_features=d, n_samples=n,\n", + " chunks=(n//10, d))\n", + "alg = HyperbandCV(model, params, max_iter=81)\n", + "\n", + "info = alg.info()\n", + "\n", + "train_time = sleep * info['total_partial_fit_calls']\n", + "best_time = train_time / num_workers\n", + "print(f\"Fastest possible time = {best_time}s\")" + ] + }, + { + "cell_type": "code", + "execution_count": 9, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Actual time = 9.322114944458008\n" + ] + } + ], + "source": [ + "start = time()\n", + "alg.fit(X, y, **partial_fit_kwargs)\n", + "actual_time = time() - start\n", + "print(f\"Actual time = {actual_time}\")" + ] + }, + { + "cell_type": "code", + "execution_count": 10, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "bracket=4\n", + "[0 1 2 3]\n" + ] + }, + { + "data": { + "text/html": [ + "
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bracketbracket_iteriterationsmean_copy_timemean_fit_timemean_score_timemean_test_scoremean_train_scoremodel_idnum_modelspartial_fit_callsscorestd_fit_timestd_score_timestd_test_scorestd_train_score
201bracket=00810.0002018.4344380.0001330.363630Nonebracket=0-05810.363630000None
202bracket=00810.0001978.4292630.0001140.251782Nonebracket=0-35810.251782000None
203bracket=00810.0001598.4254360.0000970.971782Nonebracket=0-15810.971782000None
204bracket=11810.0004238.4293410.0002400.703019Nonebracket=1-72810.703019000None
205bracket=11810.0003868.4303120.0002080.942910Nonebracket=1-42810.942910000None
\n", + "
" + ], + "text/plain": [ + " bracket bracket_iter iterations mean_copy_time mean_fit_time \\\n", + "201 bracket=0 0 81 0.000201 8.434438 \n", + "202 bracket=0 0 81 0.000197 8.429263 \n", + "203 bracket=0 0 81 0.000159 8.425436 \n", + "204 bracket=1 1 81 0.000423 8.429341 \n", + "205 bracket=1 1 81 0.000386 8.430312 \n", + "\n", + " mean_score_time mean_test_score mean_train_score model_id \\\n", + "201 0.000133 0.363630 None bracket=0-0 \n", + "202 0.000114 0.251782 None bracket=0-3 \n", + "203 0.000097 0.971782 None bracket=0-1 \n", + "204 0.000240 0.703019 None bracket=1-7 \n", + "205 0.000208 0.942910 None bracket=1-4 \n", + "\n", + " num_models partial_fit_calls score std_fit_time std_score_time \\\n", + "201 5 81 0.363630 0 0 \n", + "202 5 81 0.251782 0 0 \n", + "203 5 81 0.971782 0 0 \n", + "204 2 81 0.703019 0 0 \n", + "205 2 81 0.942910 0 0 \n", + "\n", + " std_test_score std_train_score \n", + "201 0 None \n", + "202 0 None \n", + "203 0 None \n", + "204 0 None \n", + "205 0 None " + ] + }, + "execution_count": 10, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "import pandas as pd\n", + "df = pd.DataFrame(alg.history_)\n", + "print(df.bracket.max())\n", + "print(df.bracket_iter.unique())\n", + "df.tail()\n", + "# df[df.mean_test_score > 0.95]" + ] + }, + { + "cell_type": "code", + "execution_count": 11, + "metadata": {}, + "outputs": [ + { + "data": { + "application/vnd.vegalite.v2+json": { + "$schema": "https://vega.github.io/schema/vega-lite/v2.4.3.json", + "config": { + "view": { + "height": 300, + "width": 400 + } + }, + "data": { + "values": [ + { + "bracket": "bracket=4", + "bracket_iter": 0, + "iterations": 1, + "mean_copy_time": 0.00022220611572265625, + "mean_fit_time": 0.10291123390197754, + "mean_score_time": 0.00013875961303710938, + "mean_test_score": 0.21233911067827616, + "mean_train_score": null, + "model_id": "bracket=4-13", + "num_models": 81, + "partial_fit_calls": 1, + "score": 0.21233911067827616, + 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+ "text/plain": [ + "\n", + "\n", + "If you see this message, it means the renderer has not been properly enabled\n", + "for the frontend that you are using. For more information, see\n", + "https://altair-viz.github.io/user_guide/troubleshooting.html\n" + ] + }, + "execution_count": 11, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "from altair import Chart\n", + "Chart(df).mark_circle().encode(\n", + " x='bracket_iter', row='bracket', y='mean_test_score')" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.6.5" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +}