diff --git a/README.rst b/README.rst index ea432ce..f7120eb 100644 --- a/README.rst +++ b/README.rst @@ -28,9 +28,9 @@ Conda installation You can easy install panisa program and requirements using conda: -.. raw:: html +.. code-block:: bash -
conda install -c bioconda panisa
+ conda install -c bioconda panisa Requirements ~~~~~~~~~~~~ @@ -41,9 +41,9 @@ You need to install `the emboss package `_ In debian, type: -.. raw:: html +.. code-block:: bash -
sudo apt-get install python-pysam python-requests emboss
+ sudo apt-get install python-pysam python-requests emboss Installation ~~~~~~~~~~~~ @@ -52,23 +52,23 @@ Download the current tarball and unzip it. Verify the installation using the test file -.. raw:: html +.. code-block:: bash -
python panISa.py test/test.bam
+ python panISa.py test/test.bam Alternatively, you can install from `PyPI repository `_ -.. raw:: html +.. code-block:: bash -
pip install panisa
+ pip install panisa Command and Options ------------------- -.. raw:: html +.. code-block:: bash -
python panISa.py [options] bam
+ python panISa.py [options] bam Options ~~~~~~~ @@ -112,9 +112,9 @@ Validation PanISa results can be search for homology against ISFinder to find IS familly using the script ISFinder_search.py -.. raw:: html +.. code-block:: bash -
python ISFinder_search.py [options] panISa results
+ python ISFinder_search.py [options] panISa results Recommandation -------------- diff --git a/setup.py b/setup.py index 023d3ff..d9ab622 100644 --- a/setup.py +++ b/setup.py @@ -56,7 +56,8 @@ # # This field corresponds to the "Description" metadata field: # https://packaging.python.org/specifications/core-metadata/#description-optional - # long_description=long_description, # Optional + long_description=long_description, # Optional + long_description_content_type='text/x-rst', # This should be a valid link to your project's main homepage. #