diff --git a/docs/index.html b/docs/index.html index b959026..357d10c 100644 --- a/docs/index.html +++ b/docs/index.html @@ -593,8 +593,8 @@

ProteinFlow Stable Releases

the sequence similarity threshold for excluding chains exclude_clusters : bool, default False if `True`, exclude clusters that contain chains similar to chains in the `exclude_chains` list - exclude_based_on_cdr : {"H1", "H2", "H3", "L1", "L2", "L3"}, optional - if given and `exclude_clusters` is `True` + the dataset is SAbDab, exclude files based on only the given CDR clusters + exclude_based_on_cdr : list, optional + if given and `exclude_clusters` is `True` + the dataset is SAbDab, exclude files based on only the given CDR clusters (choose from "H1", "H2", "H3", "L1", "L2", "L3") load_ligands : bool, default False if `True`, load ligands from the PDB files exclude_chains_without_ligands : bool, default False @@ -760,8 +760,8 @@

ProteinFlow Stable Releases

the sequence similarity threshold for excluding chains exclude_clusters : bool, default False if `True`, exclude clusters that contain chains similar to chains in the `exclude_chains` list - exclude_based_on_cdr : {"H1", "H2", "H3", "L1", "L2", "L3"}, optional - if given and `exclude_clusters` is `True` + the dataset is SAbDab, exclude files based on only the given CDR clusters + exclude_based_on_cdr : list, optional + if given and `exclude_clusters` is `True` + the dataset is SAbDab, exclude files based on only the given CDR clusters (choose from "H1", "H2", "H3", "L1", "L2", "L3") random_seed : int, default 42 random seed for reproducibility (set to `None` to use a random seed) exclude_chains_without_ligands : bool, default False @@ -1136,8 +1136,8 @@

Parameters

the sequence similarity threshold for excluding chains
exclude_clusters : bool, default False
if True, exclude clusters that contain chains similar to chains in the exclude_chains list
-
exclude_based_on_cdr : {"H1", "H2", "H3", "L1", "L2", "L3"}, optional
-
if given and exclude_clusters is True + the dataset is SAbDab, exclude files based on only the given CDR clusters
+
exclude_based_on_cdr : list, optional
+
if given and exclude_clusters is True + the dataset is SAbDab, exclude files based on only the given CDR clusters (choose from "H1", "H2", "H3", "L1", "L2", "L3")
load_ligands : bool, default False
if True, load ligands from the PDB files
exclude_chains_without_ligands : bool, default False
@@ -1277,8 +1277,8 @@

Returns

the sequence similarity threshold for excluding chains exclude_clusters : bool, default False if `True`, exclude clusters that contain chains similar to chains in the `exclude_chains` list - exclude_based_on_cdr : {"H1", "H2", "H3", "L1", "L2", "L3"}, optional - if given and `exclude_clusters` is `True` + the dataset is SAbDab, exclude files based on only the given CDR clusters + exclude_based_on_cdr : list, optional + if given and `exclude_clusters` is `True` + the dataset is SAbDab, exclude files based on only the given CDR clusters (choose from "H1", "H2", "H3", "L1", "L2", "L3") load_ligands : bool, default False if `True`, load ligands from the PDB files exclude_chains_without_ligands : bool, default False @@ -1454,8 +1454,8 @@

Parameters

the sequence similarity threshold for excluding chains
exclude_clusters : bool, default False
if True, exclude clusters that contain chains similar to chains in the exclude_chains list
-
exclude_based_on_cdr : {"H1", "H2", "H3", "L1", "L2", "L3"}, optional
-
if given and exclude_clusters is True + the dataset is SAbDab, exclude files based on only the given CDR clusters
+
exclude_based_on_cdr : list, optional
+
if given and exclude_clusters is True + the dataset is SAbDab, exclude files based on only the given CDR clusters (choose from "H1", "H2", "H3", "L1", "L2", "L3")
random_seed : int, default 42
random seed for reproducibility (set to None to use a random seed)
exclude_chains_without_ligands : bool, default False
@@ -1537,8 +1537,8 @@

Returns

the sequence similarity threshold for excluding chains exclude_clusters : bool, default False if `True`, exclude clusters that contain chains similar to chains in the `exclude_chains` list - exclude_based_on_cdr : {"H1", "H2", "H3", "L1", "L2", "L3"}, optional - if given and `exclude_clusters` is `True` + the dataset is SAbDab, exclude files based on only the given CDR clusters + exclude_based_on_cdr : list, optional + if given and `exclude_clusters` is `True` + the dataset is SAbDab, exclude files based on only the given CDR clusters (choose from "H1", "H2", "H3", "L1", "L2", "L3") random_seed : int, default 42 random seed for reproducibility (set to `None` to use a random seed) exclude_chains_without_ligands : bool, default False