== 2024-03-25 18:26:13,501 build_log.py:229 INFO This is EasyBuild 4.9.1.dev0-r99173c4ad927595100d0124228b2e1007bce7413 (framework: 4.9.1.dev0-r92d29680fb5d14086943c96a9efcd2558093f6ae, easyblocks: 4.9.1.dev0-r99173c4ad927595100d0124228b2e1007bce7413) on host node4013.donphan.os. == 2024-03-25 18:26:13,501 build_log.py:232 INFO Command line: --buildpath='/tmp/vsc47063/easybuild/build' --containerpath='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/containers' --git-working-dirs-path='/user/gent/470/vsc47063/easybuild' --github-user='pavelToman' --group-writable-installdir --installpath='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib' --packagepath='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/packages' --prefix='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib' --rebuild --repositorypath='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/ebfiles_repo' --robot='/user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs' --sourcepath='/data/gent/vo/001/gvo00117/easybuild/sources:/apps/gent/sources' --tmpdir='/tmp/vsc47063' --trace cassiopeia_pybundle.eb == 2024-03-25 18:26:13,501 build_log.py:234 INFO Using /tmp/vsc47063/eb-78i3uhl1 as temporary directory == 2024-03-25 18:26:13,501 robot.py:60 INFO Using robot path(s): ['/user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs'] == 2024-03-25 18:26:13,502 robot.py:75 INFO Extended list of robot search paths with []: ['/user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs'] == 2024-03-25 18:26:13,502 options.py:1811 INFO Using default external modules metadata cfg files: ['/user/gent/470/vsc47063/easybuild/easybuild-framework/etc/cray_external_modules_metadata.cfg', '/user/gent/470/vsc47063/easybuild/easybuild-framework/etc/ohpc_external_modules_metadata.cfg'] == 2024-03-25 18:26:13,511 systemtools.py:1245 INFO Found Python version 3.6 == 2024-03-25 18:26:13,511 systemtools.py:1257 INFO Running EasyBuild with Python 3 (version 3.6) == 2024-03-25 18:26:13,511 filetools.py:2753 INFO /tmp/fake_vsc_vkow03s6 moved to /tmp/vsc47063/eb-78i3uhl1/fake_vsc_vkow03s6 == 2024-03-25 18:26:13,511 hooks.py:152 INFO No location for hooks implementation provided, no hooks defined == 2024-03-25 18:26:13,511 hooks.py:180 INFO Defined hooks verified, all known hooks: == 2024-03-25 18:26:13,511 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previously undefined) == 2024-03-25 18:26:13,511 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previously undefined) == 2024-03-25 18:26:13,511 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previously undefined) == 2024-03-25 18:26:13,511 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previously undefined) == 2024-03-25 18:26:13,511 modules.py:299 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it == 2024-03-25 18:26:13,512 modules.py:455 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all == 2024-03-25 18:26:13,512 run.py:247 INFO running cmd: type module == 2024-03-25 18:26:13,540 modules.py:242 INFO Found Lmod version 8.7.4 == 2024-03-25 18:26:13,540 modules.py:250 INFO Converted actual version to '8.7.4' == 2024-03-25 18:26:13,583 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/470/vsc47063/easybuild/easybuild-framework/eb == 2024-03-25 18:26:13,583 tools.py:289 INFO Not considering /user/gent/470/vsc47063/easybuild (no easybuild/easyconfigs subdir found) == 2024-03-25 18:26:13,583 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/470/vsc47063/easybuild (via resolved path to 'eb')... == 2024-03-25 18:26:13,584 filetools.py:1030 INFO No index found for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs, creating one (in memory)... == 2024-03-25 18:26:15,765 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... == 2024-03-25 18:26:15,767 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') == 2024-03-25 18:26:15,767 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') == 2024-03-25 18:26:15,767 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') == 2024-03-25 18:26:15,767 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') == 2024-03-25 18:26:15,775 modules.py:299 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it == 2024-03-25 18:26:15,781 modules.py:455 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all == 2024-03-25 18:26:15,781 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] == 2024-03-25 18:26:15,882 easyconfig.py:1908 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle == 2024-03-25 18:26:15,882 easyconfig.py:1955 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'Cassiopeia') == 2024-03-25 18:26:15,883 easyconfig.py:705 INFO Parsing easyconfig file /kyukon/data/gent/470/vsc47063/vsc-software-stack/214_Single-cell_python_bundle/cassiopeia_pybundle.eb with rawcontent: easyblock = 'PythonBundle' name = 'Cassiopeia' version = '2.0.0' homepage = 'https://github.com/YosefLab/Cassiopeia' description = """A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction.""" toolchain = {'name': 'foss', 'version': '2023a'} # "Biopython>=1.71", OK # "bokeh>=0.12.15", OK # "cython>=0.29.2", OK pybundle # "ete3>=3.1.1", OK # "hits", OK exts # "itolapi", OK exts # "matplotlib>=2.2.2", OK # "nbconvert>=5.4.0", OK exts # "nbformat>=4.4.0", Ok exts # "networkx>=2.5", OK # "ngs-tools>=1.5.3", OK exts # "numba>=0.51.0", OK # "numpy>=1.19.5", OK # "pandas>=1.1.4", OK # "pysam>=0.14.1", OK # "python-Levenshtein", OK exts # "PyYAML>=3.12", OK # "scipy>=1.2.0", OK # "typing-extensions>=3.7.4", OK # "tqdm>=4", OK builddependencies = [ ('CMake', '3.26.3'), ] dependencies = [ ('Python', '3.11.3'), ('Python-bundle-PyPI', '2023.06'), ('Biopython', '1.83'), ('scikit-build', '0.17.6'), ('bokeh', '3.2.2'), # ('ETE', '3.1.3'), ('matplotlib', '3.7.2'), ('networkx', '3.1'), ('numba', '0.58.1'), ('Pysam', '0.22.0'), ('PyYAML', '6.0'), ('typing-extensions', '4.9.0'), ('tqdm', '4.66.1'), ('hatchling', '1.18.0'), ] use_pip = True sanity_pip_check = True # cleo 2.0.1 has requirement rapidfuzz<3.0.0,>=2.2.0, but you have rapidfuzz 3.7.0. # levenshtein 0.25.0 has requirement rapidfuzz<4.0.0,>=3.1.0, but you have rapidfuzz 2.15.1. exts_list = [ ('hatch_nodejs_version', '0.3.2', { 'checksums': ['8a7828d817b71e50bbbbb01c9bfc0b329657b7900c56846489b9c958de15b54c'], }), ('ngs-tools', '1.8.5', { 'checksums': ['380e236a101c5b1ac3c0fcdbcc908a210179b6ef2a93fbea9f4eb0ec2edc1de0'], }), ('nbformat', '5.10.3', { 'checksums': ['60ed5e910ef7c6264b87d644f276b1b49e24011930deef54605188ddeb211685'], }), ('nbconvert', '7.16.3', { 'checksums': ['a6733b78ce3d47c3f85e504998495b07e6ea9cf9bf6ec1c98dda63ec6ad19142'], }), ('itolapi', '4.1.4', { 'checksums': ['68e87ba51d209da556b0e373b3b0456b644a1a732c193fedbd7785ff37b6a2cb'], }), ('hits', '0.4.0', { 'checksums': ['743bfc1b56ab8fcf9fefacfcad4c1f23e9bafec1b42225709dbe097c8e669383'], }), ('Levenshtein', '0.22.0', { 'modulename': False, 'checksums': ['86d285d770551cb648d4fcfe5243449a479e694e56b65272dc6cbda879012051'], }), ('python-Levenshtein', '0.22.0', { 'modulename': 'Levenshtein', 'checksums': ['6f8e2216fbd4610ccfa1bab2e0052fb23de34c2333c192de08150eeb99717702'], }), (name, version, { # 'test_script': 'make test', 'source_urls': ['https://github.com/YosefLab/Cassiopeia/archive/'], 'sources': [{'download_filename': '%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], 'checksums': ['28ae7495152683f5733222255056a1e7b2f7a51e1cee2f23f0d9f8ae5f4c3742'], }), ] sanity_check_commands = [ "cd %(builddir)s/Cassiopeia/Cassiopeia-* && make test", # failing with: ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ] moduleclass = 'bio' == 2024-03-25 18:26:15,883 parser.py:139 INFO Type checking of easyconfig parameter values passed! == 2024-03-25 18:26:15,884 easyconfig.py:686 INFO setting easyconfig parameter builddependencies: value [('CMake', '3.26.3')] (type: ) == 2024-03-25 18:26:15,884 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.11.3'), ('Python-bundle-PyPI', '2023.06'), ('Biopython', '1.83'), ('scikit-build', '0.17.6'), ('bokeh', '3.2.2'), ('matplotlib', '3.7.2'), ('networkx', '3.1'), ('numba', '0.58.1'), ('Pysam', '0.22.0'), ('PyYAML', '6.0'), ('typing-extensions', '4.9.0'), ('tqdm', '4.66.1'), ('hatchling', '1.18.0')] (type: ) == 2024-03-25 18:26:15,884 easyconfig.py:686 INFO setting easyconfig parameter description: value A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction. (type: ) == 2024-03-25 18:26:15,884 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) == 2024-03-25 18:26:15,884 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('hatch_nodejs_version', '0.3.2', {'checksums': ['8a7828d817b71e50bbbbb01c9bfc0b329657b7900c56846489b9c958de15b54c']}), ('ngs-tools', '1.8.5', {'checksums': ['380e236a101c5b1ac3c0fcdbcc908a210179b6ef2a93fbea9f4eb0ec2edc1de0']}), ('nbformat', '5.10.3', {'checksums': ['60ed5e910ef7c6264b87d644f276b1b49e24011930deef54605188ddeb211685']}), ('nbconvert', '7.16.3', {'checksums': ['a6733b78ce3d47c3f85e504998495b07e6ea9cf9bf6ec1c98dda63ec6ad19142']}), ('itolapi', '4.1.4', {'checksums': ['68e87ba51d209da556b0e373b3b0456b644a1a732c193fedbd7785ff37b6a2cb']}), ('hits', '0.4.0', {'checksums': ['743bfc1b56ab8fcf9fefacfcad4c1f23e9bafec1b42225709dbe097c8e669383']}), ('Levenshtein', '0.22.0', {'modulename': False, 'checksums': ['86d285d770551cb648d4fcfe5243449a479e694e56b65272dc6cbda879012051']}), ('python-Levenshtein', '0.22.0', {'modulename': 'Levenshtein', 'checksums': ['6f8e2216fbd4610ccfa1bab2e0052fb23de34c2333c192de08150eeb99717702']}), ('Cassiopeia', '2.0.0', {'source_urls': ['https://github.com/YosefLab/Cassiopeia/archive/'], 'sources': [{'download_filename': '%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], 'checksums': ['28ae7495152683f5733222255056a1e7b2f7a51e1cee2f23f0d9f8ae5f4c3742']})] (type: ) == 2024-03-25 18:26:15,884 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/YosefLab/Cassiopeia (type: ) == 2024-03-25 18:26:15,884 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value bio (type: ) == 2024-03-25 18:26:15,884 easyconfig.py:686 INFO setting easyconfig parameter name: value Cassiopeia (type: ) == 2024-03-25 18:26:15,884 easyconfig.py:686 INFO setting easyconfig parameter sanity_check_commands: value ['cd %(builddir)s/Cassiopeia/Cassiopeia-* && make test'] (type: ) == 2024-03-25 18:26:15,884 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) == 2024-03-25 18:26:15,884 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2023a'} (type: ) == 2024-03-25 18:26:15,884 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) == 2024-03-25 18:26:15,884 easyconfig.py:686 INFO setting easyconfig parameter version: value 2.0.0 (type: ) == 2024-03-25 18:26:15,884 easyconfig.py:747 INFO Parsing dependency specifications... == 2024-03-25 18:26:15,885 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:26:15,885 easyconfig.py:2197 INFO No index found for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs, so creating it... == 2024-03-25 18:26:17,152 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... == 2024-03-25 18:26:17,152 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') == 2024-03-25 18:26:17,153 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') == 2024-03-25 18:26:17,153 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') == 2024-03-25 18:26:17,153 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') == 2024-03-25 18:26:17,153 modules.py:299 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it == 2024-03-25 18:26:17,154 modules.py:455 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all == 2024-03-25 18:26:17,154 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] == 2024-03-25 18:26:17,158 easyconfig.py:1908 INFO Derived full easyblock module path for Toolchain: easybuild.easyblocks.generic.toolchain == 2024-03-25 18:26:17,158 easyconfig.py:1955 INFO Successfully obtained class 'Toolchain' for easyblock 'Toolchain' (software name 'foss') == 2024-03-25 18:26:17,158 easyconfig.py:705 INFO Parsing easyconfig file /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/f/foss/foss-2023a.eb with rawcontent: easyblock = 'Toolchain' name = 'foss' version = '2023a' homepage = 'https://easybuild.readthedocs.io/en/master/Common-toolchains.html#foss-toolchain' description = """GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.""" toolchain = SYSTEM local_gccver = '12.3.0' # toolchain used to build foss dependencies local_comp_mpi_tc = ('gompi', version) # we need GCC and OpenMPI as explicit dependencies instead of gompi toolchain # because of toolchain preparation functions dependencies = [ ('GCC', local_gccver), ('OpenMPI', '4.1.5', '', ('GCC', local_gccver)), ('FlexiBLAS', '3.3.1', '', ('GCC', local_gccver)), ('FFTW', '3.3.10', '', ('GCC', local_gccver)), ('FFTW.MPI', '3.3.10', '', local_comp_mpi_tc), ('ScaLAPACK', '2.2.0', '-fb', local_comp_mpi_tc), ] moduleclass = 'toolchain' == 2024-03-25 18:26:17,158 parser.py:139 INFO Type checking of easyconfig parameter values passed! == 2024-03-25 18:26:17,159 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('GCC', '12.3.0'), ('OpenMPI', '4.1.5', '', ('GCC', '12.3.0')), ('FlexiBLAS', '3.3.1', '', ('GCC', '12.3.0')), ('FFTW', '3.3.10', '', ('GCC', '12.3.0')), ('FFTW.MPI', '3.3.10', '', ('gompi', '2023a')), ('ScaLAPACK', '2.2.0', '-fb', ('gompi', '2023a'))] (type: ) == 2024-03-25 18:26:17,159 easyconfig.py:686 INFO setting easyconfig parameter description: value GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. (type: ) == 2024-03-25 18:26:17,159 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value Toolchain (type: ) == 2024-03-25 18:26:17,159 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://easybuild.readthedocs.io/en/master/Common-toolchains.html#foss-toolchain (type: ) == 2024-03-25 18:26:17,159 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value toolchain (type: ) == 2024-03-25 18:26:17,159 easyconfig.py:686 INFO setting easyconfig parameter name: value foss (type: ) == 2024-03-25 18:26:17,159 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'system', 'version': 'system'} (type: ) == 2024-03-25 18:26:17,159 easyconfig.py:686 INFO setting easyconfig parameter version: value 2023a (type: ) == 2024-03-25 18:26:17,159 easyconfig.py:747 INFO Parsing dependency specifications... == 2024-03-25 18:26:17,159 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:26:17,431 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='foss', github_account='foss', name='foss', nameletter='f', nameletterlower='f', namelower='foss', sysroot='', toolchain_name='system', toolchain_version='system', version='2023a', version_major='2023a', versionprefix='', versionsuffix='' == 2024-03-25 18:26:17,431 easyconfig.py:866 INFO Validating easyconfig == 2024-03-25 18:26:17,431 easyconfig.py:871 INFO Checking OS dependencies == 2024-03-25 18:26:17,431 easyconfig.py:926 INFO OS dependencies ok: [] == 2024-03-25 18:26:17,431 easyconfig.py:876 INFO Checking skipsteps == 2024-03-25 18:26:17,431 easyconfig.py:881 INFO Checking build option lists == 2024-03-25 18:26:17,432 easyconfig.py:884 INFO Checking licenses == 2024-03-25 18:26:17,434 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' == 2024-03-25 18:26:17,434 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) == 2024-03-25 18:26:17,434 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='cassiopeia', github_account='cassiopeia', mpi_cmd_prefix='mpirun -n 1', name='Cassiopeia', nameletter='C', nameletterlower='c', namelower='cassiopeia', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.3', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='2.0.0', version_major='2', version_major_minor='2.0', version_minor='0', versionprefix='', versionsuffix='' == 2024-03-25 18:26:23,125 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... == 2024-03-25 18:26:23,126 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') == 2024-03-25 18:26:23,126 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') == 2024-03-25 18:26:23,126 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') == 2024-03-25 18:26:23,126 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') == 2024-03-25 18:26:23,127 modules.py:299 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it == 2024-03-25 18:26:23,133 modules.py:455 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all == 2024-03-25 18:26:23,133 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] == 2024-03-25 18:26:23,134 easyconfig.py:1908 INFO Derived full easyblock module path for Toolchain: easybuild.easyblocks.generic.toolchain == 2024-03-25 18:26:23,134 easyconfig.py:1955 INFO Successfully obtained class 'Toolchain' for easyblock 'Toolchain' (software name 'foss') == 2024-03-25 18:26:23,134 easyconfig.py:705 INFO Parsing easyconfig file /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/f/foss/foss-2023a.eb with rawcontent: easyblock = 'Toolchain' name = 'foss' version = '2023a' homepage = 'https://easybuild.readthedocs.io/en/master/Common-toolchains.html#foss-toolchain' description = """GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.""" toolchain = SYSTEM local_gccver = '12.3.0' # toolchain used to build foss dependencies local_comp_mpi_tc = ('gompi', version) # we need GCC and OpenMPI as explicit dependencies instead of gompi toolchain # because of toolchain preparation functions dependencies = [ ('GCC', local_gccver), ('OpenMPI', '4.1.5', '', ('GCC', local_gccver)), ('FlexiBLAS', '3.3.1', '', ('GCC', local_gccver)), ('FFTW', '3.3.10', '', ('GCC', local_gccver)), ('FFTW.MPI', '3.3.10', '', local_comp_mpi_tc), ('ScaLAPACK', '2.2.0', '-fb', local_comp_mpi_tc), ] moduleclass = 'toolchain' == 2024-03-25 18:26:23,134 parser.py:139 INFO Type checking of easyconfig parameter values passed! == 2024-03-25 18:26:23,134 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('GCC', '12.3.0'), ('OpenMPI', '4.1.5', '', ('GCC', '12.3.0')), ('FlexiBLAS', '3.3.1', '', ('GCC', '12.3.0')), ('FFTW', '3.3.10', '', ('GCC', '12.3.0')), ('FFTW.MPI', '3.3.10', '', ('gompi', '2023a')), ('ScaLAPACK', '2.2.0', '-fb', ('gompi', '2023a'))] (type: ) == 2024-03-25 18:26:23,135 easyconfig.py:686 INFO setting easyconfig parameter description: value GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. (type: ) == 2024-03-25 18:26:23,135 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value Toolchain (type: ) == 2024-03-25 18:26:23,135 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://easybuild.readthedocs.io/en/master/Common-toolchains.html#foss-toolchain (type: ) == 2024-03-25 18:26:23,135 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value toolchain (type: ) == 2024-03-25 18:26:23,135 easyconfig.py:686 INFO setting easyconfig parameter name: value foss (type: ) == 2024-03-25 18:26:23,135 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'system', 'version': 'system'} (type: ) == 2024-03-25 18:26:23,135 easyconfig.py:686 INFO setting easyconfig parameter version: value 2023a (type: ) == 2024-03-25 18:26:23,135 easyconfig.py:747 INFO Parsing dependency specifications... == 2024-03-25 18:26:23,135 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:26:23,136 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='foss', github_account='foss', name='foss', nameletter='f', nameletterlower='f', namelower='foss', sysroot='', toolchain_name='system', toolchain_version='system', version='2023a', version_major='2023a', versionprefix='', versionsuffix='' == 2024-03-25 18:26:23,137 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,138 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... == 2024-03-25 18:26:23,139 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') == 2024-03-25 18:26:23,139 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') == 2024-03-25 18:26:23,139 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') == 2024-03-25 18:26:23,139 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') == 2024-03-25 18:26:23,139 modules.py:299 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it == 2024-03-25 18:26:23,139 modules.py:455 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all == 2024-03-25 18:26:23,140 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] == 2024-03-25 18:26:23,140 easyconfig.py:1908 INFO Derived full easyblock module path for Bundle: easybuild.easyblocks.generic.bundle == 2024-03-25 18:26:23,140 easyconfig.py:1955 INFO Successfully obtained class 'Bundle' for easyblock 'Bundle' (software name 'GCC') == 2024-03-25 18:26:23,141 easyconfig.py:705 INFO Parsing easyconfig file /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/g/GCC/GCC-12.3.0.eb with rawcontent: easyblock = 'Bundle' name = 'GCC' version = '12.3.0' homepage = 'https://gcc.gnu.org/' description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).""" toolchain = SYSTEM dependencies = [ ('GCCcore', version), # binutils built on top of GCCcore, which was built on top of binutils (built with system toolchain) ('binutils', '2.40', '', ('GCCcore', version)), ] altroot = 'GCCcore' altversion = 'GCCcore' # this bundle serves as a compiler-only toolchain, so it should be marked as compiler (important for HMNS) moduleclass = 'compiler' == 2024-03-25 18:26:23,141 parser.py:139 INFO Type checking of easyconfig parameter values passed! == 2024-03-25 18:26:23,141 easyconfig.py:686 INFO setting easyconfig parameter altroot: value GCCcore (type: ) == 2024-03-25 18:26:23,141 easyconfig.py:686 INFO setting easyconfig parameter altversion: value GCCcore (type: ) == 2024-03-25 18:26:23,141 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('GCCcore', '12.3.0'), ('binutils', '2.40', '', ('GCCcore', '12.3.0'))] (type: ) == 2024-03-25 18:26:23,141 easyconfig.py:686 INFO setting easyconfig parameter description: value The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). (type: ) == 2024-03-25 18:26:23,141 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value Bundle (type: ) == 2024-03-25 18:26:23,141 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://gcc.gnu.org/ (type: ) == 2024-03-25 18:26:23,141 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value compiler (type: ) == 2024-03-25 18:26:23,141 easyconfig.py:686 INFO setting easyconfig parameter name: value GCC (type: ) == 2024-03-25 18:26:23,141 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'system', 'version': 'system'} (type: ) == 2024-03-25 18:26:23,141 easyconfig.py:686 INFO setting easyconfig parameter version: value 12.3.0 (type: ) == 2024-03-25 18:26:23,141 easyconfig.py:747 INFO Parsing dependency specifications... == 2024-03-25 18:26:23,142 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:26:23,142 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='gcc', github_account='gcc', name='GCC', nameletter='G', nameletterlower='g', namelower='gcc', sysroot='', toolchain_name='system', toolchain_version='system', version='12.3.0', version_major='12', version_major_minor='12.3', version_minor='3', versionprefix='', versionsuffix='' == 2024-03-25 18:26:23,143 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,145 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... == 2024-03-25 18:26:23,145 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') == 2024-03-25 18:26:23,146 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') == 2024-03-25 18:26:23,146 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') == 2024-03-25 18:26:23,146 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') == 2024-03-25 18:26:23,146 modules.py:299 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it == 2024-03-25 18:26:23,146 modules.py:455 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all == 2024-03-25 18:26:23,146 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] == 2024-03-25 18:26:23,174 easyconfig.py:1938 INFO Successfully obtained EB_OpenMPI class instance from easybuild.easyblocks.openmpi == 2024-03-25 18:26:23,174 easyconfig.py:1955 INFO Successfully obtained class 'EB_OpenMPI' for easyblock 'None' (software name 'OpenMPI') == 2024-03-25 18:26:23,174 easyconfig.py:705 INFO Parsing easyconfig file /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/o/OpenMPI/OpenMPI-4.1.5-GCC-12.3.0.eb with rawcontent: name = 'OpenMPI' version = '4.1.5' homepage = 'https://www.open-mpi.org/' description = """The Open MPI Project is an open source MPI-3 implementation.""" toolchain = {'name': 'GCC', 'version': '12.3.0'} source_urls = ['https://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] sources = [SOURCELOWER_TAR_BZ2] patches = [ 'OpenMPI-4.1.1_build-with-internal-cuda-header.patch', 'OpenMPI-4.1.1_opal-datatype-cuda-performance.patch', 'OpenMPI-4.1.5_fix-pmix3x.patch', 'OpenMPI-4.1.x_add_atomic_wmb.patch', ] checksums = [ {'openmpi-4.1.5.tar.bz2': 'a640986bc257389dd379886fdae6264c8cfa56bc98b71ce3ae3dfbd8ce61dbe3'}, {'OpenMPI-4.1.1_build-with-internal-cuda-header.patch': '63eac52736bdf7644c480362440a7f1f0ae7c7cae47b7565f5635c41793f8c83'}, {'OpenMPI-4.1.1_opal-datatype-cuda-performance.patch': 'b767c7166cf0b32906132d58de5439c735193c9fd09ec3c5c11db8d5fa68750e'}, {'OpenMPI-4.1.5_fix-pmix3x.patch': '46edac3dbf32f2a611d45e8a3c8edd3ae2f430eec16a1373b510315272115c40'}, {'OpenMPI-4.1.x_add_atomic_wmb.patch': '9494bbc546d661ba5189e44b4c84a7f8df30a87cdb9d96ce2e73a7c8fecba172'}, ] builddependencies = [ ('pkgconf', '1.9.5'), ('Perl', '5.36.1'), ('Autotools', '20220317'), ] dependencies = [ ('zlib', '1.2.13'), ('hwloc', '2.9.1'), ('libevent', '2.1.12'), ('UCX', '1.14.1'), ('libfabric', '1.18.0'), ('PMIx', '4.2.4'), ('UCC', '1.2.0'), ] # Update configure to include changes from the "internal-cuda" patch # by running a subset of autogen.pl sufficient to achieve this # without doing the full, long-running regeneration. preconfigopts = ' && '.join([ 'cd config', 'autom4te --language=m4sh opal_get_version.m4sh -o opal_get_version.sh', 'cd ..', 'autoconf', 'autoheader', 'aclocal', 'automake', '' ]) # CUDA related patches and custom configure option can be removed if CUDA support isn't wanted. configopts = '--with-cuda=internal ' # disable MPI1 compatibility for now, see what breaks... # configopts += '--enable-mpi1-compatibility ' # to enable SLURM integration (site-specific) # configopts += '--with-slurm --with-pmi=/usr/include/slurm --with-pmi-libdir=/usr' moduleclass = 'mpi' == 2024-03-25 18:26:23,174 parser.py:139 INFO Type checking of easyconfig parameter values passed! == 2024-03-25 18:26:23,175 easyconfig.py:686 INFO setting easyconfig parameter builddependencies: value [('pkgconf', '1.9.5'), ('Perl', '5.36.1'), ('Autotools', '20220317')] (type: ) == 2024-03-25 18:26:23,175 easyconfig.py:686 INFO setting easyconfig parameter checksums: value [{'openmpi-4.1.5.tar.bz2': 'a640986bc257389dd379886fdae6264c8cfa56bc98b71ce3ae3dfbd8ce61dbe3'}, {'OpenMPI-4.1.1_build-with-internal-cuda-header.patch': '63eac52736bdf7644c480362440a7f1f0ae7c7cae47b7565f5635c41793f8c83'}, {'OpenMPI-4.1.1_opal-datatype-cuda-performance.patch': 'b767c7166cf0b32906132d58de5439c735193c9fd09ec3c5c11db8d5fa68750e'}, {'OpenMPI-4.1.5_fix-pmix3x.patch': '46edac3dbf32f2a611d45e8a3c8edd3ae2f430eec16a1373b510315272115c40'}, {'OpenMPI-4.1.x_add_atomic_wmb.patch': '9494bbc546d661ba5189e44b4c84a7f8df30a87cdb9d96ce2e73a7c8fecba172'}] (type: ) == 2024-03-25 18:26:23,175 easyconfig.py:686 INFO setting easyconfig parameter configopts: value --with-cuda=internal (type: ) == 2024-03-25 18:26:23,175 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('zlib', '1.2.13'), ('hwloc', '2.9.1'), ('libevent', '2.1.12'), ('UCX', '1.14.1'), ('libfabric', '1.18.0'), ('PMIx', '4.2.4'), ('UCC', '1.2.0')] (type: ) == 2024-03-25 18:26:23,175 easyconfig.py:686 INFO setting easyconfig parameter description: value The Open MPI Project is an open source MPI-3 implementation. (type: ) == 2024-03-25 18:26:23,175 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://www.open-mpi.org/ (type: ) == 2024-03-25 18:26:23,175 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value mpi (type: ) == 2024-03-25 18:26:23,175 easyconfig.py:686 INFO setting easyconfig parameter name: value OpenMPI (type: ) == 2024-03-25 18:26:23,175 easyconfig.py:686 INFO setting easyconfig parameter patches: value ['OpenMPI-4.1.1_build-with-internal-cuda-header.patch', 'OpenMPI-4.1.1_opal-datatype-cuda-performance.patch', 'OpenMPI-4.1.5_fix-pmix3x.patch', 'OpenMPI-4.1.x_add_atomic_wmb.patch'] (type: ) == 2024-03-25 18:26:23,175 easyconfig.py:686 INFO setting easyconfig parameter preconfigopts: value cd config && autom4te --language=m4sh opal_get_version.m4sh -o opal_get_version.sh && cd .. && autoconf && autoheader && aclocal && automake && (type: ) == 2024-03-25 18:26:23,175 easyconfig.py:686 INFO setting easyconfig parameter source_urls: value ['https://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] (type: ) == 2024-03-25 18:26:23,175 easyconfig.py:686 INFO setting easyconfig parameter sources: value ['%(namelower)s-%(version)s.tar.bz2'] (type: ) == 2024-03-25 18:26:23,175 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'GCC', 'version': '12.3.0'} (type: ) == 2024-03-25 18:26:23,175 easyconfig.py:686 INFO setting easyconfig parameter version: value 4.1.5 (type: ) == 2024-03-25 18:26:23,175 easyconfig.py:747 INFO Parsing dependency specifications... == 2024-03-25 18:26:23,176 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:26:23,176 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... == 2024-03-25 18:26:23,176 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') == 2024-03-25 18:26:23,176 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') == 2024-03-25 18:26:23,177 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') == 2024-03-25 18:26:23,177 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') == 2024-03-25 18:26:23,177 modules.py:299 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it == 2024-03-25 18:26:23,177 modules.py:455 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all == 2024-03-25 18:26:23,177 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] == 2024-03-25 18:26:23,178 easyconfig.py:1908 INFO Derived full easyblock module path for Bundle: easybuild.easyblocks.generic.bundle == 2024-03-25 18:26:23,178 easyconfig.py:1955 INFO Successfully obtained class 'Bundle' for easyblock 'Bundle' (software name 'GCC') == 2024-03-25 18:26:23,178 easyconfig.py:705 INFO Parsing easyconfig file /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/g/GCC/GCC-12.3.0.eb with rawcontent: easyblock = 'Bundle' name = 'GCC' version = '12.3.0' homepage = 'https://gcc.gnu.org/' description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).""" toolchain = SYSTEM dependencies = [ ('GCCcore', version), # binutils built on top of GCCcore, which was built on top of binutils (built with system toolchain) ('binutils', '2.40', '', ('GCCcore', version)), ] altroot = 'GCCcore' altversion = 'GCCcore' # this bundle serves as a compiler-only toolchain, so it should be marked as compiler (important for HMNS) moduleclass = 'compiler' == 2024-03-25 18:26:23,178 parser.py:139 INFO Type checking of easyconfig parameter values passed! == 2024-03-25 18:26:23,178 easyconfig.py:686 INFO setting easyconfig parameter altroot: value GCCcore (type: ) == 2024-03-25 18:26:23,178 easyconfig.py:686 INFO setting easyconfig parameter altversion: value GCCcore (type: ) == 2024-03-25 18:26:23,178 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('GCCcore', '12.3.0'), ('binutils', '2.40', '', ('GCCcore', '12.3.0'))] (type: ) == 2024-03-25 18:26:23,178 easyconfig.py:686 INFO setting easyconfig parameter description: value The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). (type: ) == 2024-03-25 18:26:23,179 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value Bundle (type: ) == 2024-03-25 18:26:23,179 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://gcc.gnu.org/ (type: ) == 2024-03-25 18:26:23,179 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value compiler (type: ) == 2024-03-25 18:26:23,179 easyconfig.py:686 INFO setting easyconfig parameter name: value GCC (type: ) == 2024-03-25 18:26:23,179 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'system', 'version': 'system'} (type: ) == 2024-03-25 18:26:23,179 easyconfig.py:686 INFO setting easyconfig parameter version: value 12.3.0 (type: ) == 2024-03-25 18:26:23,179 easyconfig.py:747 INFO Parsing dependency specifications... == 2024-03-25 18:26:23,179 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:26:23,179 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='gcc', github_account='gcc', name='GCC', nameletter='G', nameletterlower='g', namelower='gcc', sysroot='', toolchain_name='system', toolchain_version='system', version='12.3.0', version_major='12', version_major_minor='12.3', version_minor='3', versionprefix='', versionsuffix='' == 2024-03-25 18:26:23,180 easyconfig.py:866 INFO Validating easyconfig == 2024-03-25 18:26:23,180 easyconfig.py:871 INFO Checking OS dependencies == 2024-03-25 18:26:23,180 easyconfig.py:926 INFO OS dependencies ok: [] == 2024-03-25 18:26:23,180 easyconfig.py:876 INFO Checking skipsteps == 2024-03-25 18:26:23,180 easyconfig.py:881 INFO Checking build option lists == 2024-03-25 18:26:23,180 easyconfig.py:884 INFO Checking licenses == 2024-03-25 18:26:23,194 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='openmpi', github_account='openmpi', name='OpenMPI', nameletter='O', nameletterlower='o', namelower='openmpi', perlmajver='5', perlminver='36', perlshortver='5.36', perlver='5.36.1', sysroot='', toolchain_name='GCC', toolchain_version='12.3.0', version='4.1.5', version_major='4', version_major_minor='4.1', version_minor='1', versionprefix='', versionsuffix='' == 2024-03-25 18:26:23,195 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,198 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... == 2024-03-25 18:26:23,198 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') == 2024-03-25 18:26:23,199 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') == 2024-03-25 18:26:23,199 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') == 2024-03-25 18:26:23,199 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') == 2024-03-25 18:26:23,199 modules.py:299 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it == 2024-03-25 18:26:23,199 modules.py:455 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all == 2024-03-25 18:26:23,199 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] == 2024-03-25 18:26:23,259 easyconfig.py:1908 INFO Derived full easyblock module path for EB_GCC: easybuild.easyblocks.gcc == 2024-03-25 18:26:23,259 easyconfig.py:1955 INFO Successfully obtained class 'EB_GCC' for easyblock 'EB_GCC' (software name 'GCCcore') == 2024-03-25 18:26:23,259 easyconfig.py:705 INFO Parsing easyconfig file /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/g/GCCcore/GCCcore-12.3.0.eb with rawcontent: easyblock = 'EB_GCC' name = 'GCCcore' version = '12.3.0' homepage = 'https://gcc.gnu.org/' description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).""" toolchain = SYSTEM source_urls = [ 'https://ftpmirror.gnu.org/gnu/gcc/gcc-%(version)s', # GCC auto-resolving HTTP mirror 'https://sourceware.org/pub/gcc/releases/gcc-%(version)s', # fallback URL for GCC 'https://ftpmirror.gnu.org/gnu/gmp', # idem for GMP 'https://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'https://ftpmirror.gnu.org/gnu/mpc', # idem for MPC 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies 'https://gcc.gnu.org/pub/gcc/infrastructure/', # HTTPS mirror for GCC dependencies 'https://libisl.sourceforge.io/', # fallback URL for isl 'https://sourceware.org/pub/newlib/', # for newlib 'https://github.com/MentorEmbedded/nvptx-tools/archive', # for nvptx-tools ] sources = [ 'gcc-%(version)s.tar.gz', 'gmp-6.2.1.tar.bz2', 'mpfr-4.2.0.tar.bz2', 'mpc-1.3.1.tar.gz', 'isl-0.26.tar.bz2', 'newlib-4.3.0.20230120.tar.gz', {'download_filename': '93e0090.tar.gz', 'filename': 'nvptx-tools-20230122.tar.gz'}, ] patches = [ 'GCCcore-6.2.0-fix-find-isl.patch', 'GCCcore-9.3.0_gmp-c99.patch', 'GCCcore-12.1.0_fix-double-destruct.patch', 'GCCcore-12.2.0_fix-avx512-misoptimization.patch', 'GCCcore-12.2.0_improve-cuda-compatibility.patch', 'GCCcore-12.x_riscv_multiarch_support.patch', ] checksums = [ {'gcc-12.3.0.tar.gz': '11275aa7bb34cd8ab101d01b341015499f8d9466342a2574ece93f954d92273b'}, {'gmp-6.2.1.tar.bz2': 'eae9326beb4158c386e39a356818031bd28f3124cf915f8c5b1dc4c7a36b4d7c'}, {'mpfr-4.2.0.tar.bz2': '691db39178e36fc460c046591e4b0f2a52c8f2b3ee6d750cc2eab25f1eaa999d'}, {'mpc-1.3.1.tar.gz': 'ab642492f5cf882b74aa0cb730cd410a81edcdbec895183ce930e706c1c759b8'}, {'isl-0.26.tar.bz2': '5eac8664e9d67be6bd0bee5085d6840b8baf738c06814df47eaf4166d9776436'}, {'newlib-4.3.0.20230120.tar.gz': '83a62a99af59e38eb9b0c58ed092ee24d700fff43a22c03e433955113ef35150'}, {'nvptx-tools-20230122.tar.gz': 'af05fac26e9a83d337758a5495dc35f7a7bbfd90cd09f4a5d3242d059f235e08'}, {'GCCcore-6.2.0-fix-find-isl.patch': '5ad909606d17d851c6ad629b4fddb6c1621844218b8d139fed18c502a7696c68'}, {'GCCcore-9.3.0_gmp-c99.patch': '0e135e1cc7cec701beea9d7d17a61bab34cfd496b4b555930016b98db99f922e'}, {'GCCcore-12.1.0_fix-double-destruct.patch': '2e09c125318b6c15ec60f1807d77fb7d1f32b64a4e5d1c9a3da89ba2ca738d35'}, {'GCCcore-12.2.0_fix-avx512-misoptimization.patch': 'bb3db707727b9975b0005346ef04230a96b3ad896f004a34262a82a244b5d436'}, {'GCCcore-12.2.0_improve-cuda-compatibility.patch': '91d00122554b56381592229398540e63baa26d03633292a7fdf338407a4a62d5'}, {'GCCcore-12.x_riscv_multiarch_support.patch': '92fc2b17b6943611a657904500fbf3db8160eddbcea320828d4a50a885e2778f'}, ] builddependencies = [ ('M4', '1.4.19'), ('binutils', '2.40'), ] languages = ['c', 'c++', 'fortran'] withisl = True withnvptx = True # Perl is only required when building with NVPTX support if withnvptx: osdependencies = ['perl'] moduleclass = 'compiler' == 2024-03-25 18:26:23,259 parser.py:139 INFO Type checking of easyconfig parameter values passed! == 2024-03-25 18:26:23,260 easyconfig.py:686 INFO setting easyconfig parameter builddependencies: value [('M4', '1.4.19'), ('binutils', '2.40')] (type: ) == 2024-03-25 18:26:23,260 easyconfig.py:686 INFO setting easyconfig parameter checksums: value [{'gcc-12.3.0.tar.gz': '11275aa7bb34cd8ab101d01b341015499f8d9466342a2574ece93f954d92273b'}, {'gmp-6.2.1.tar.bz2': 'eae9326beb4158c386e39a356818031bd28f3124cf915f8c5b1dc4c7a36b4d7c'}, {'mpfr-4.2.0.tar.bz2': '691db39178e36fc460c046591e4b0f2a52c8f2b3ee6d750cc2eab25f1eaa999d'}, {'mpc-1.3.1.tar.gz': 'ab642492f5cf882b74aa0cb730cd410a81edcdbec895183ce930e706c1c759b8'}, {'isl-0.26.tar.bz2': '5eac8664e9d67be6bd0bee5085d6840b8baf738c06814df47eaf4166d9776436'}, {'newlib-4.3.0.20230120.tar.gz': '83a62a99af59e38eb9b0c58ed092ee24d700fff43a22c03e433955113ef35150'}, {'nvptx-tools-20230122.tar.gz': 'af05fac26e9a83d337758a5495dc35f7a7bbfd90cd09f4a5d3242d059f235e08'}, {'GCCcore-6.2.0-fix-find-isl.patch': '5ad909606d17d851c6ad629b4fddb6c1621844218b8d139fed18c502a7696c68'}, {'GCCcore-9.3.0_gmp-c99.patch': '0e135e1cc7cec701beea9d7d17a61bab34cfd496b4b555930016b98db99f922e'}, {'GCCcore-12.1.0_fix-double-destruct.patch': '2e09c125318b6c15ec60f1807d77fb7d1f32b64a4e5d1c9a3da89ba2ca738d35'}, {'GCCcore-12.2.0_fix-avx512-misoptimization.patch': 'bb3db707727b9975b0005346ef04230a96b3ad896f004a34262a82a244b5d436'}, {'GCCcore-12.2.0_improve-cuda-compatibility.patch': '91d00122554b56381592229398540e63baa26d03633292a7fdf338407a4a62d5'}, {'GCCcore-12.x_riscv_multiarch_support.patch': '92fc2b17b6943611a657904500fbf3db8160eddbcea320828d4a50a885e2778f'}] (type: ) == 2024-03-25 18:26:23,260 easyconfig.py:686 INFO setting easyconfig parameter description: value The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). (type: ) == 2024-03-25 18:26:23,260 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value EB_GCC (type: ) == 2024-03-25 18:26:23,260 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://gcc.gnu.org/ (type: ) == 2024-03-25 18:26:23,260 easyconfig.py:686 INFO setting easyconfig parameter languages: value ['c', 'c++', 'fortran'] (type: ) == 2024-03-25 18:26:23,260 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value compiler (type: ) == 2024-03-25 18:26:23,260 easyconfig.py:686 INFO setting easyconfig parameter name: value GCCcore (type: ) == 2024-03-25 18:26:23,260 easyconfig.py:686 INFO setting easyconfig parameter osdependencies: value ['perl'] (type: ) == 2024-03-25 18:26:23,260 easyconfig.py:686 INFO setting easyconfig parameter patches: value ['GCCcore-6.2.0-fix-find-isl.patch', 'GCCcore-9.3.0_gmp-c99.patch', 'GCCcore-12.1.0_fix-double-destruct.patch', 'GCCcore-12.2.0_fix-avx512-misoptimization.patch', 'GCCcore-12.2.0_improve-cuda-compatibility.patch', 'GCCcore-12.x_riscv_multiarch_support.patch'] (type: ) == 2024-03-25 18:26:23,260 easyconfig.py:686 INFO setting easyconfig parameter source_urls: value ['https://ftpmirror.gnu.org/gnu/gcc/gcc-%(version)s', 'https://sourceware.org/pub/gcc/releases/gcc-%(version)s', 'https://ftpmirror.gnu.org/gnu/gmp', 'https://ftpmirror.gnu.org/gnu/mpfr', 'https://ftpmirror.gnu.org/gnu/mpc', 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', 'https://gcc.gnu.org/pub/gcc/infrastructure/', 'https://libisl.sourceforge.io/', 'https://sourceware.org/pub/newlib/', 'https://github.com/MentorEmbedded/nvptx-tools/archive'] (type: ) == 2024-03-25 18:26:23,260 easyconfig.py:686 INFO setting easyconfig parameter sources: value ['gcc-%(version)s.tar.gz', 'gmp-6.2.1.tar.bz2', 'mpfr-4.2.0.tar.bz2', 'mpc-1.3.1.tar.gz', 'isl-0.26.tar.bz2', 'newlib-4.3.0.20230120.tar.gz', {'download_filename': '93e0090.tar.gz', 'filename': 'nvptx-tools-20230122.tar.gz'}] (type: ) == 2024-03-25 18:26:23,260 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'system', 'version': 'system'} (type: ) == 2024-03-25 18:26:23,260 easyconfig.py:686 INFO setting easyconfig parameter version: value 12.3.0 (type: ) == 2024-03-25 18:26:23,260 easyconfig.py:686 INFO setting easyconfig parameter withisl: value True (type: ) == 2024-03-25 18:26:23,260 easyconfig.py:686 INFO setting easyconfig parameter withnvptx: value True (type: ) == 2024-03-25 18:26:23,260 easyconfig.py:747 INFO Parsing dependency specifications... == 2024-03-25 18:26:23,261 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:26:23,261 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='gcccore', github_account='gcccore', name='GCCcore', nameletter='G', nameletterlower='g', namelower='gcccore', sysroot='', toolchain_name='system', toolchain_version='system', version='12.3.0', version_major='12', version_major_minor='12.3', version_minor='3', versionprefix='', versionsuffix='' == 2024-03-25 18:26:23,262 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,264 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... == 2024-03-25 18:26:23,265 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') == 2024-03-25 18:26:23,265 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') == 2024-03-25 18:26:23,265 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') == 2024-03-25 18:26:23,265 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') == 2024-03-25 18:26:23,265 modules.py:299 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it == 2024-03-25 18:26:23,265 modules.py:455 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all == 2024-03-25 18:26:23,265 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] == 2024-03-25 18:26:23,284 easyconfig.py:1938 INFO Successfully obtained EB_binutils class instance from easybuild.easyblocks.binutils == 2024-03-25 18:26:23,284 easyconfig.py:1955 INFO Successfully obtained class 'EB_binutils' for easyblock 'None' (software name 'binutils') == 2024-03-25 18:26:23,284 easyconfig.py:705 INFO Parsing easyconfig file /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/b/binutils/binutils-2.40-GCCcore-12.3.0.eb with rawcontent: name = 'binutils' version = '2.40' homepage = 'https://directory.fsf.org/project/binutils/' description = "binutils: GNU binary utilities" toolchain = {'name': 'GCCcore', 'version': '12.3.0'} source_urls = [GNU_SOURCE] sources = [SOURCE_TAR_GZ] checksums = ['d7f82c4047decf43a6f769ac32456a92ddb6932409a585c633cdd4e9df23d956'] builddependencies = [ ('flex', '2.6.4'), ('Bison', '3.8.2'), # use same binutils version that was used when building GCC toolchain, to 'bootstrap' this binutils ('binutils', version, '', SYSTEM) ] dependencies = [ # zlib is a runtime dep to avoid that it gets embedded in libbfd.so, # see https://github.com/easybuilders/easybuild-easyblocks/issues/1350 ('zlib', '1.2.13'), ] # avoid build failure when makeinfo command is not available # see https://sourceware.org/bugzilla/show_bug.cgi?id=15345 buildopts = 'MAKEINFO=true' installopts = buildopts moduleclass = 'tools' == 2024-03-25 18:26:23,285 parser.py:139 INFO Type checking of easyconfig parameter values passed! == 2024-03-25 18:26:23,285 easyconfig.py:686 INFO setting easyconfig parameter builddependencies: value [('flex', '2.6.4'), ('Bison', '3.8.2'), ('binutils', '2.40', '', {'name': 'system', 'version': 'system'})] (type: ) == 2024-03-25 18:26:23,285 easyconfig.py:686 INFO setting easyconfig parameter buildopts: value MAKEINFO=true (type: ) == 2024-03-25 18:26:23,285 easyconfig.py:686 INFO setting easyconfig parameter checksums: value ['d7f82c4047decf43a6f769ac32456a92ddb6932409a585c633cdd4e9df23d956'] (type: ) == 2024-03-25 18:26:23,285 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('zlib', '1.2.13')] (type: ) == 2024-03-25 18:26:23,285 easyconfig.py:686 INFO setting easyconfig parameter description: value binutils: GNU binary utilities (type: ) == 2024-03-25 18:26:23,285 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://directory.fsf.org/project/binutils/ (type: ) == 2024-03-25 18:26:23,285 easyconfig.py:686 INFO setting easyconfig parameter installopts: value MAKEINFO=true (type: ) == 2024-03-25 18:26:23,285 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value tools (type: ) == 2024-03-25 18:26:23,285 easyconfig.py:686 INFO setting easyconfig parameter name: value binutils (type: ) == 2024-03-25 18:26:23,285 easyconfig.py:686 INFO setting easyconfig parameter source_urls: value ['https://ftpmirror.gnu.org/gnu/%(namelower)s'] (type: ) == 2024-03-25 18:26:23,285 easyconfig.py:686 INFO setting easyconfig parameter sources: value ['%(name)s-%(version)s.tar.gz'] (type: ) == 2024-03-25 18:26:23,285 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'GCCcore', 'version': '12.3.0'} (type: ) == 2024-03-25 18:26:23,285 easyconfig.py:686 INFO setting easyconfig parameter version: value 2.40 (type: ) == 2024-03-25 18:26:23,285 easyconfig.py:747 INFO Parsing dependency specifications... == 2024-03-25 18:26:23,286 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:26:23,286 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... == 2024-03-25 18:26:23,287 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') == 2024-03-25 18:26:23,287 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') == 2024-03-25 18:26:23,287 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') == 2024-03-25 18:26:23,287 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') == 2024-03-25 18:26:23,287 modules.py:299 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it == 2024-03-25 18:26:23,287 modules.py:455 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all == 2024-03-25 18:26:23,287 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] == 2024-03-25 18:26:23,288 easyconfig.py:1908 INFO Derived full easyblock module path for EB_GCC: easybuild.easyblocks.gcc == 2024-03-25 18:26:23,288 easyconfig.py:1955 INFO Successfully obtained class 'EB_GCC' for easyblock 'EB_GCC' (software name 'GCCcore') == 2024-03-25 18:26:23,288 easyconfig.py:705 INFO Parsing easyconfig file /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/g/GCCcore/GCCcore-12.3.0.eb with rawcontent: easyblock = 'EB_GCC' name = 'GCCcore' version = '12.3.0' homepage = 'https://gcc.gnu.org/' description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).""" toolchain = SYSTEM source_urls = [ 'https://ftpmirror.gnu.org/gnu/gcc/gcc-%(version)s', # GCC auto-resolving HTTP mirror 'https://sourceware.org/pub/gcc/releases/gcc-%(version)s', # fallback URL for GCC 'https://ftpmirror.gnu.org/gnu/gmp', # idem for GMP 'https://ftpmirror.gnu.org/gnu/mpfr', # idem for MPFR 'https://ftpmirror.gnu.org/gnu/mpc', # idem for MPC 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies 'https://gcc.gnu.org/pub/gcc/infrastructure/', # HTTPS mirror for GCC dependencies 'https://libisl.sourceforge.io/', # fallback URL for isl 'https://sourceware.org/pub/newlib/', # for newlib 'https://github.com/MentorEmbedded/nvptx-tools/archive', # for nvptx-tools ] sources = [ 'gcc-%(version)s.tar.gz', 'gmp-6.2.1.tar.bz2', 'mpfr-4.2.0.tar.bz2', 'mpc-1.3.1.tar.gz', 'isl-0.26.tar.bz2', 'newlib-4.3.0.20230120.tar.gz', {'download_filename': '93e0090.tar.gz', 'filename': 'nvptx-tools-20230122.tar.gz'}, ] patches = [ 'GCCcore-6.2.0-fix-find-isl.patch', 'GCCcore-9.3.0_gmp-c99.patch', 'GCCcore-12.1.0_fix-double-destruct.patch', 'GCCcore-12.2.0_fix-avx512-misoptimization.patch', 'GCCcore-12.2.0_improve-cuda-compatibility.patch', 'GCCcore-12.x_riscv_multiarch_support.patch', ] checksums = [ {'gcc-12.3.0.tar.gz': '11275aa7bb34cd8ab101d01b341015499f8d9466342a2574ece93f954d92273b'}, {'gmp-6.2.1.tar.bz2': 'eae9326beb4158c386e39a356818031bd28f3124cf915f8c5b1dc4c7a36b4d7c'}, {'mpfr-4.2.0.tar.bz2': '691db39178e36fc460c046591e4b0f2a52c8f2b3ee6d750cc2eab25f1eaa999d'}, {'mpc-1.3.1.tar.gz': 'ab642492f5cf882b74aa0cb730cd410a81edcdbec895183ce930e706c1c759b8'}, {'isl-0.26.tar.bz2': '5eac8664e9d67be6bd0bee5085d6840b8baf738c06814df47eaf4166d9776436'}, {'newlib-4.3.0.20230120.tar.gz': '83a62a99af59e38eb9b0c58ed092ee24d700fff43a22c03e433955113ef35150'}, {'nvptx-tools-20230122.tar.gz': 'af05fac26e9a83d337758a5495dc35f7a7bbfd90cd09f4a5d3242d059f235e08'}, {'GCCcore-6.2.0-fix-find-isl.patch': '5ad909606d17d851c6ad629b4fddb6c1621844218b8d139fed18c502a7696c68'}, {'GCCcore-9.3.0_gmp-c99.patch': '0e135e1cc7cec701beea9d7d17a61bab34cfd496b4b555930016b98db99f922e'}, {'GCCcore-12.1.0_fix-double-destruct.patch': '2e09c125318b6c15ec60f1807d77fb7d1f32b64a4e5d1c9a3da89ba2ca738d35'}, {'GCCcore-12.2.0_fix-avx512-misoptimization.patch': 'bb3db707727b9975b0005346ef04230a96b3ad896f004a34262a82a244b5d436'}, {'GCCcore-12.2.0_improve-cuda-compatibility.patch': '91d00122554b56381592229398540e63baa26d03633292a7fdf338407a4a62d5'}, {'GCCcore-12.x_riscv_multiarch_support.patch': '92fc2b17b6943611a657904500fbf3db8160eddbcea320828d4a50a885e2778f'}, ] builddependencies = [ ('M4', '1.4.19'), ('binutils', '2.40'), ] languages = ['c', 'c++', 'fortran'] withisl = True withnvptx = True # Perl is only required when building with NVPTX support if withnvptx: osdependencies = ['perl'] moduleclass = 'compiler' == 2024-03-25 18:26:23,289 parser.py:139 INFO Type checking of easyconfig parameter values passed! == 2024-03-25 18:26:23,289 easyconfig.py:686 INFO setting easyconfig parameter builddependencies: value [('M4', '1.4.19'), ('binutils', '2.40')] (type: ) == 2024-03-25 18:26:23,289 easyconfig.py:686 INFO setting easyconfig parameter checksums: value [{'gcc-12.3.0.tar.gz': '11275aa7bb34cd8ab101d01b341015499f8d9466342a2574ece93f954d92273b'}, {'gmp-6.2.1.tar.bz2': 'eae9326beb4158c386e39a356818031bd28f3124cf915f8c5b1dc4c7a36b4d7c'}, {'mpfr-4.2.0.tar.bz2': '691db39178e36fc460c046591e4b0f2a52c8f2b3ee6d750cc2eab25f1eaa999d'}, {'mpc-1.3.1.tar.gz': 'ab642492f5cf882b74aa0cb730cd410a81edcdbec895183ce930e706c1c759b8'}, {'isl-0.26.tar.bz2': '5eac8664e9d67be6bd0bee5085d6840b8baf738c06814df47eaf4166d9776436'}, {'newlib-4.3.0.20230120.tar.gz': '83a62a99af59e38eb9b0c58ed092ee24d700fff43a22c03e433955113ef35150'}, {'nvptx-tools-20230122.tar.gz': 'af05fac26e9a83d337758a5495dc35f7a7bbfd90cd09f4a5d3242d059f235e08'}, {'GCCcore-6.2.0-fix-find-isl.patch': '5ad909606d17d851c6ad629b4fddb6c1621844218b8d139fed18c502a7696c68'}, {'GCCcore-9.3.0_gmp-c99.patch': '0e135e1cc7cec701beea9d7d17a61bab34cfd496b4b555930016b98db99f922e'}, {'GCCcore-12.1.0_fix-double-destruct.patch': '2e09c125318b6c15ec60f1807d77fb7d1f32b64a4e5d1c9a3da89ba2ca738d35'}, {'GCCcore-12.2.0_fix-avx512-misoptimization.patch': 'bb3db707727b9975b0005346ef04230a96b3ad896f004a34262a82a244b5d436'}, {'GCCcore-12.2.0_improve-cuda-compatibility.patch': '91d00122554b56381592229398540e63baa26d03633292a7fdf338407a4a62d5'}, {'GCCcore-12.x_riscv_multiarch_support.patch': '92fc2b17b6943611a657904500fbf3db8160eddbcea320828d4a50a885e2778f'}] (type: ) == 2024-03-25 18:26:23,289 easyconfig.py:686 INFO setting easyconfig parameter description: value The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). (type: ) == 2024-03-25 18:26:23,289 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value EB_GCC (type: ) == 2024-03-25 18:26:23,289 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://gcc.gnu.org/ (type: ) == 2024-03-25 18:26:23,289 easyconfig.py:686 INFO setting easyconfig parameter languages: value ['c', 'c++', 'fortran'] (type: ) == 2024-03-25 18:26:23,289 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value compiler (type: ) == 2024-03-25 18:26:23,289 easyconfig.py:686 INFO setting easyconfig parameter name: value GCCcore (type: ) == 2024-03-25 18:26:23,290 easyconfig.py:686 INFO setting easyconfig parameter osdependencies: value ['perl'] (type: ) == 2024-03-25 18:26:23,290 easyconfig.py:686 INFO setting easyconfig parameter patches: value ['GCCcore-6.2.0-fix-find-isl.patch', 'GCCcore-9.3.0_gmp-c99.patch', 'GCCcore-12.1.0_fix-double-destruct.patch', 'GCCcore-12.2.0_fix-avx512-misoptimization.patch', 'GCCcore-12.2.0_improve-cuda-compatibility.patch', 'GCCcore-12.x_riscv_multiarch_support.patch'] (type: ) == 2024-03-25 18:26:23,290 easyconfig.py:686 INFO setting easyconfig parameter source_urls: value ['https://ftpmirror.gnu.org/gnu/gcc/gcc-%(version)s', 'https://sourceware.org/pub/gcc/releases/gcc-%(version)s', 'https://ftpmirror.gnu.org/gnu/gmp', 'https://ftpmirror.gnu.org/gnu/mpfr', 'https://ftpmirror.gnu.org/gnu/mpc', 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', 'https://gcc.gnu.org/pub/gcc/infrastructure/', 'https://libisl.sourceforge.io/', 'https://sourceware.org/pub/newlib/', 'https://github.com/MentorEmbedded/nvptx-tools/archive'] (type: ) == 2024-03-25 18:26:23,290 easyconfig.py:686 INFO setting easyconfig parameter sources: value ['gcc-%(version)s.tar.gz', 'gmp-6.2.1.tar.bz2', 'mpfr-4.2.0.tar.bz2', 'mpc-1.3.1.tar.gz', 'isl-0.26.tar.bz2', 'newlib-4.3.0.20230120.tar.gz', {'download_filename': '93e0090.tar.gz', 'filename': 'nvptx-tools-20230122.tar.gz'}] (type: ) == 2024-03-25 18:26:23,290 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'system', 'version': 'system'} (type: ) == 2024-03-25 18:26:23,290 easyconfig.py:686 INFO setting easyconfig parameter version: value 12.3.0 (type: ) == 2024-03-25 18:26:23,290 easyconfig.py:686 INFO setting easyconfig parameter withisl: value True (type: ) == 2024-03-25 18:26:23,290 easyconfig.py:686 INFO setting easyconfig parameter withnvptx: value True (type: ) == 2024-03-25 18:26:23,290 easyconfig.py:747 INFO Parsing dependency specifications... == 2024-03-25 18:26:23,290 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:26:23,291 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='gcccore', github_account='gcccore', name='GCCcore', nameletter='G', nameletterlower='g', namelower='gcccore', sysroot='', toolchain_name='system', toolchain_version='system', version='12.3.0', version_major='12', version_major_minor='12.3', version_minor='3', versionprefix='', versionsuffix='' == 2024-03-25 18:26:23,291 easyconfig.py:866 INFO Validating easyconfig == 2024-03-25 18:26:23,291 easyconfig.py:871 INFO Checking OS dependencies == 2024-03-25 18:26:23,291 filetools.py:526 INFO Command rpm found at /usr/bin/rpm == 2024-03-25 18:26:23,292 run.py:247 INFO running cmd: unset LD_LIBRARY_PATH && rpm -q perl == 2024-03-25 18:26:23,303 easyconfig.py:926 INFO OS dependencies ok: ['perl'] == 2024-03-25 18:26:23,303 easyconfig.py:876 INFO Checking skipsteps == 2024-03-25 18:26:23,303 easyconfig.py:881 INFO Checking build option lists == 2024-03-25 18:26:23,303 easyconfig.py:884 INFO Checking licenses == 2024-03-25 18:26:23,305 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='binutils', github_account='binutils', name='binutils', nameletter='b', nameletterlower='b', namelower='binutils', sysroot='', toolchain_name='GCCcore', toolchain_version='12.3.0', version='2.40', version_major='2', version_major_minor='2.40', version_minor='40', versionprefix='', versionsuffix='' == 2024-03-25 18:26:23,307 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,310 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... == 2024-03-25 18:26:23,310 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') == 2024-03-25 18:26:23,310 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') == 2024-03-25 18:26:23,310 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') == 2024-03-25 18:26:23,310 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') == 2024-03-25 18:26:23,311 modules.py:299 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it == 2024-03-25 18:26:23,311 modules.py:455 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all == 2024-03-25 18:26:23,311 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] == 2024-03-25 18:26:23,312 easyconfig.py:1908 INFO Derived full easyblock module path for ConfigureMake: easybuild.easyblocks.generic.configuremake == 2024-03-25 18:26:23,312 easyconfig.py:1955 INFO Successfully obtained class 'ConfigureMake' for easyblock 'ConfigureMake' (software name 'M4') == 2024-03-25 18:26:23,312 easyconfig.py:705 INFO Parsing easyconfig file /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/m/M4/M4-1.4.19.eb with rawcontent: easyblock = 'ConfigureMake' name = 'M4' version = '1.4.19' homepage = 'https://www.gnu.org/software/m4/m4.html' description = """ GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc. """ toolchain = SYSTEM source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] checksums = ['3be4a26d825ffdfda52a56fc43246456989a3630093cced3fbddf4771ee58a70'] # '-fgnu89-inline' is required to avoid linking errors with older glibc's, # see https://github.com/easybuilders/easybuild-easyconfigs/issues/529 configopts = "--enable-c++ CPPFLAGS=-fgnu89-inline" sanity_check_paths = { 'files': ['bin/m4'], 'dirs': [], } moduleclass = 'devel' == 2024-03-25 18:26:23,312 parser.py:139 INFO Type checking of easyconfig parameter values passed! == 2024-03-25 18:26:23,312 easyconfig.py:686 INFO setting easyconfig parameter checksums: value ['3be4a26d825ffdfda52a56fc43246456989a3630093cced3fbddf4771ee58a70'] (type: ) == 2024-03-25 18:26:23,312 easyconfig.py:686 INFO setting easyconfig parameter configopts: value --enable-c++ CPPFLAGS=-fgnu89-inline (type: ) == 2024-03-25 18:26:23,313 easyconfig.py:686 INFO setting easyconfig parameter description: value GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc. (type: ) == 2024-03-25 18:26:23,313 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value ConfigureMake (type: ) == 2024-03-25 18:26:23,313 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://www.gnu.org/software/m4/m4.html (type: ) == 2024-03-25 18:26:23,313 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value devel (type: ) == 2024-03-25 18:26:23,313 easyconfig.py:686 INFO setting easyconfig parameter name: value M4 (type: ) == 2024-03-25 18:26:23,313 easyconfig.py:686 INFO setting easyconfig parameter sanity_check_paths: value {'files': ['bin/m4'], 'dirs': []} (type: ) == 2024-03-25 18:26:23,313 easyconfig.py:686 INFO setting easyconfig parameter source_urls: value ['https://ftpmirror.gnu.org/gnu/%(namelower)s'] (type: ) == 2024-03-25 18:26:23,313 easyconfig.py:686 INFO setting easyconfig parameter sources: value ['%(namelower)s-%(version)s.tar.gz'] (type: ) == 2024-03-25 18:26:23,313 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'system', 'version': 'system'} (type: ) == 2024-03-25 18:26:23,313 easyconfig.py:686 INFO setting easyconfig parameter version: value 1.4.19 (type: ) == 2024-03-25 18:26:23,313 easyconfig.py:747 INFO Parsing dependency specifications... == 2024-03-25 18:26:23,313 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:26:23,314 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='m4', github_account='m4', name='M4', nameletter='M', nameletterlower='m', namelower='m4', sysroot='', toolchain_name='system', toolchain_version='system', version='1.4.19', version_major='1', version_major_minor='1.4', version_minor='4', versionprefix='', versionsuffix='' == 2024-03-25 18:26:23,314 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,315 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... == 2024-03-25 18:26:23,315 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') == 2024-03-25 18:26:23,315 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') == 2024-03-25 18:26:23,315 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') == 2024-03-25 18:26:23,315 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') == 2024-03-25 18:26:23,315 modules.py:299 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it == 2024-03-25 18:26:23,316 modules.py:455 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all == 2024-03-25 18:26:23,316 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] == 2024-03-25 18:26:23,317 easyconfig.py:1938 INFO Successfully obtained EB_binutils class instance from easybuild.easyblocks.binutils == 2024-03-25 18:26:23,317 easyconfig.py:1955 INFO Successfully obtained class 'EB_binutils' for easyblock 'None' (software name 'binutils') == 2024-03-25 18:26:23,317 easyconfig.py:705 INFO Parsing easyconfig file /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/b/binutils/binutils-2.40.eb with rawcontent: name = 'binutils' version = '2.40' homepage = 'https://directory.fsf.org/project/binutils/' description = "binutils: GNU binary utilities" toolchain = SYSTEM source_urls = [GNU_SOURCE] sources = [SOURCE_TAR_GZ] checksums = ['d7f82c4047decf43a6f769ac32456a92ddb6932409a585c633cdd4e9df23d956'] builddependencies = [ ('flex', '2.6.4'), ('Bison', '3.8.2'), # zlib required, but being linked in statically, so not a runtime dep ('zlib', '1.2.13'), ] # avoid build failure when makeinfo command is not available # see https://sourceware.org/bugzilla/show_bug.cgi?id=15345 buildopts = 'MAKEINFO=true' installopts = buildopts moduleclass = 'tools' == 2024-03-25 18:26:23,317 parser.py:139 INFO Type checking of easyconfig parameter values passed! == 2024-03-25 18:26:23,317 easyconfig.py:686 INFO setting easyconfig parameter builddependencies: value [('flex', '2.6.4'), ('Bison', '3.8.2'), ('zlib', '1.2.13')] (type: ) == 2024-03-25 18:26:23,317 easyconfig.py:686 INFO setting easyconfig parameter buildopts: value MAKEINFO=true (type: ) == 2024-03-25 18:26:23,317 easyconfig.py:686 INFO setting easyconfig parameter checksums: value ['d7f82c4047decf43a6f769ac32456a92ddb6932409a585c633cdd4e9df23d956'] (type: ) == 2024-03-25 18:26:23,317 easyconfig.py:686 INFO setting easyconfig parameter description: value binutils: GNU binary utilities (type: ) == 2024-03-25 18:26:23,317 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://directory.fsf.org/project/binutils/ (type: ) == 2024-03-25 18:26:23,318 easyconfig.py:686 INFO setting easyconfig parameter installopts: value MAKEINFO=true (type: ) == 2024-03-25 18:26:23,318 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value tools (type: ) == 2024-03-25 18:26:23,318 easyconfig.py:686 INFO setting easyconfig parameter name: value binutils (type: ) == 2024-03-25 18:26:23,318 easyconfig.py:686 INFO setting easyconfig parameter source_urls: value ['https://ftpmirror.gnu.org/gnu/%(namelower)s'] (type: ) == 2024-03-25 18:26:23,318 easyconfig.py:686 INFO setting easyconfig parameter sources: value ['%(name)s-%(version)s.tar.gz'] (type: ) == 2024-03-25 18:26:23,318 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'system', 'version': 'system'} (type: ) == 2024-03-25 18:26:23,318 easyconfig.py:686 INFO setting easyconfig parameter version: value 2.40 (type: ) == 2024-03-25 18:26:23,318 easyconfig.py:747 INFO Parsing dependency specifications... == 2024-03-25 18:26:23,318 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:26:23,318 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='binutils', github_account='binutils', name='binutils', nameletter='b', nameletterlower='b', namelower='binutils', sysroot='', toolchain_name='system', toolchain_version='system', version='2.40', version_major='2', version_major_minor='2.40', version_minor='40', versionprefix='', versionsuffix='' == 2024-03-25 18:26:23,319 easyconfig.py:407 INFO Found toolchain hierarchy for toolchain {'name': 'GCCcore', 'version': '12.3.0'}: [{'name': 'GCCcore', 'version': '12.3.0'}] == 2024-03-25 18:26:23,319 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,321 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'flex', 'version': '2.6.4', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '12.3.0'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:26:23,322 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,324 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Bison', 'version': '3.8.2', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '12.3.0'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:26:23,325 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,326 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'zlib', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '12.3.0'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:26:23,327 easyconfig.py:407 INFO Found toolchain hierarchy for toolchain {'name': 'GCC', 'version': '12.3.0'}: [{'name': 'GCCcore', 'version': '12.3.0'}, {'name': 'GCC', 'version': '12.3.0'}] == 2024-03-25 18:26:23,328 modules.py:626 INFO Checking whether pkgconf/1.9.5-GCC-12.3.0 exists... == 2024-03-25 18:26:23,328 modules.py:647 INFO Module pkgconf/1.9.5-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,330 modules.py:654 INFO Result for existence check of pkgconf/1.9.5-GCC-12.3.0 module: False == 2024-03-25 18:26:23,330 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,333 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,333 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'pkgconf', 'version': '1.9.5', 'versionsuffix': '', 'toolchain': {'name': 'GCC', 'version': '12.3.0'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:26:23,334 modules.py:626 INFO Checking whether Perl/5.36.1-GCC-12.3.0 exists... == 2024-03-25 18:26:23,334 modules.py:647 INFO Module Perl/5.36.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,336 modules.py:654 INFO Result for existence check of Perl/5.36.1-GCC-12.3.0 module: False == 2024-03-25 18:26:23,336 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,337 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,337 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Perl', 'version': '5.36.1', 'versionsuffix': '', 'toolchain': {'name': 'GCC', 'version': '12.3.0'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:26:23,338 modules.py:626 INFO Checking whether Autotools/20220317-GCC-12.3.0 exists... == 2024-03-25 18:26:23,338 modules.py:647 INFO Module Autotools/20220317-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,339 modules.py:654 INFO Result for existence check of Autotools/20220317-GCC-12.3.0 module: False == 2024-03-25 18:26:23,340 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,341 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,341 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Autotools', 'version': '20220317', 'versionsuffix': '', 'toolchain': {'name': 'GCC', 'version': '12.3.0'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:26:23,342 modules.py:626 INFO Checking whether zlib/1.2.13-GCC-12.3.0 exists... == 2024-03-25 18:26:23,343 modules.py:647 INFO Module zlib/1.2.13-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,344 modules.py:654 INFO Result for existence check of zlib/1.2.13-GCC-12.3.0 module: False == 2024-03-25 18:26:23,344 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,344 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'zlib', 'version': '1.2.13', 'versionsuffix': '', 'toolchain': {'name': 'GCC', 'version': '12.3.0'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:26:23,345 modules.py:626 INFO Checking whether hwloc/2.9.1-GCC-12.3.0 exists... == 2024-03-25 18:26:23,345 modules.py:647 INFO Module hwloc/2.9.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,346 modules.py:654 INFO Result for existence check of hwloc/2.9.1-GCC-12.3.0 module: False == 2024-03-25 18:26:23,346 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,347 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,348 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'hwloc', 'version': '2.9.1', 'versionsuffix': '', 'toolchain': {'name': 'GCC', 'version': '12.3.0'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:26:23,349 modules.py:626 INFO Checking whether libevent/2.1.12-GCC-12.3.0 exists... == 2024-03-25 18:26:23,349 modules.py:647 INFO Module libevent/2.1.12-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,350 modules.py:654 INFO Result for existence check of libevent/2.1.12-GCC-12.3.0 module: False == 2024-03-25 18:26:23,350 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,352 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,352 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'libevent', 'version': '2.1.12', 'versionsuffix': '', 'toolchain': {'name': 'GCC', 'version': '12.3.0'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:26:23,353 modules.py:626 INFO Checking whether UCX/1.14.1-GCC-12.3.0 exists... == 2024-03-25 18:26:23,353 modules.py:647 INFO Module UCX/1.14.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,355 modules.py:654 INFO Result for existence check of UCX/1.14.1-GCC-12.3.0 module: False == 2024-03-25 18:26:23,355 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,356 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,357 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'UCX', 'version': '1.14.1', 'versionsuffix': '', 'toolchain': {'name': 'GCC', 'version': '12.3.0'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:26:23,358 modules.py:626 INFO Checking whether libfabric/1.18.0-GCC-12.3.0 exists... == 2024-03-25 18:26:23,358 modules.py:647 INFO Module libfabric/1.18.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,359 modules.py:654 INFO Result for existence check of libfabric/1.18.0-GCC-12.3.0 module: False == 2024-03-25 18:26:23,359 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,361 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,361 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'libfabric', 'version': '1.18.0', 'versionsuffix': '', 'toolchain': {'name': 'GCC', 'version': '12.3.0'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:26:23,362 modules.py:626 INFO Checking whether PMIx/4.2.4-GCC-12.3.0 exists... == 2024-03-25 18:26:23,363 modules.py:647 INFO Module PMIx/4.2.4-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,364 modules.py:654 INFO Result for existence check of PMIx/4.2.4-GCC-12.3.0 module: False == 2024-03-25 18:26:23,364 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,365 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,365 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PMIx', 'version': '4.2.4', 'versionsuffix': '', 'toolchain': {'name': 'GCC', 'version': '12.3.0'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:26:23,366 modules.py:626 INFO Checking whether UCC/1.2.0-GCC-12.3.0 exists... == 2024-03-25 18:26:23,366 modules.py:647 INFO Module UCC/1.2.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,367 modules.py:654 INFO Result for existence check of UCC/1.2.0-GCC-12.3.0 module: False == 2024-03-25 18:26:23,368 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,368 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,369 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'UCC', 'version': '1.2.0', 'versionsuffix': '', 'toolchain': {'name': 'GCC', 'version': '12.3.0'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:26:23,370 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,371 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... == 2024-03-25 18:26:23,372 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') == 2024-03-25 18:26:23,372 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') == 2024-03-25 18:26:23,372 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') == 2024-03-25 18:26:23,372 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') == 2024-03-25 18:26:23,372 modules.py:299 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it == 2024-03-25 18:26:23,372 modules.py:455 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all == 2024-03-25 18:26:23,372 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] == 2024-03-25 18:26:23,373 easyconfig.py:1908 INFO Derived full easyblock module path for Bundle: easybuild.easyblocks.generic.bundle == 2024-03-25 18:26:23,373 easyconfig.py:1955 INFO Successfully obtained class 'Bundle' for easyblock 'Bundle' (software name 'FlexiBLAS') == 2024-03-25 18:26:23,373 easyconfig.py:705 INFO Parsing easyconfig file /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/f/FlexiBLAS/FlexiBLAS-3.3.1-GCC-12.3.0.eb with rawcontent: easyblock = 'Bundle' name = 'FlexiBLAS' version = '3.3.1' homepage = 'https://gitlab.mpi-magdeburg.mpg.de/software/flexiblas-release' description = """FlexiBLAS is a wrapper library that enables the exchange of the BLAS and LAPACK implementation used by a program without recompiling or relinking it.""" toolchain = {'name': 'GCC', 'version': '12.3.0'} local_extra_flags = "-fstack-protector-strong -fstack-clash-protection" toolchainopts = {'pic': True, 'extra_cflags': local_extra_flags, 'extra_fflags': local_extra_flags} builddependencies = [ ('CMake', '3.26.3'), ('Python', '3.11.3'), # required for running the tests ('BLIS', '0.9.0'), ] dependencies = [ ('OpenBLAS', '0.3.23'), ] # note: first listed backend will be used as default by FlexiBLAS, # unless otherwise specified via easyconfig parameter flexiblas_default local_backends = ['OpenBLAS', 'BLIS'] # imkl supplies its backend via the imkl module, not as a dependency if ARCH == 'x86_64': local_backends.append('imkl') default_component_specs = {'start_dir': '%(namelower)s-%(version)s'} sanity_check_all_components = True # Also build and install LAPACKE, which FlexiBLAS does not support yet components = [ (name, version, { 'source_urls': ['https://gitlab.mpi-magdeburg.mpg.de/api/v4/projects/386/packages/generic/flexiblas-source/v3.3.1/'], 'sources': [SOURCELOWER_TAR_GZ], 'checksums': ['bbeebf5e5a006924558fec43f49affbe1aaa4cbacfc472a9ff6066ffda142e18'], 'backends': local_backends, }), ('LAPACK', '3.11.0', { 'easyblock': 'CMakeMake', 'source_urls': ['https://github.com/Reference-LAPACK/lapack/archive/'], 'sources': ['v%(version)s.tar.gz'], 'checksums': ['4b9ba79bfd4921ca820e83979db76ab3363155709444a787979e81c22285ffa9'], 'configopts': ('-DBUILD_SHARED_LIBS=ON -DUSE_OPTIMIZED_BLAS=ON -DLAPACKE=ON ' '-DUSE_OPTIMIZED_LAPACK=ON -DBUILD_DEPRECATED=ON ' '-DCMAKE_INSTALL_INCLUDEDIR=%(installdir)s/include/flexiblas'), 'sanity_check_paths': { 'files': ['lib/liblapacke.%s' % SHLIB_EXT, 'include/flexiblas/lapacke.h'], 'dirs': [], }, }), ] moduleclass = 'lib' == 2024-03-25 18:26:23,374 parser.py:139 INFO Type checking of easyconfig parameter values passed! == 2024-03-25 18:26:23,374 easyconfig.py:686 INFO setting easyconfig parameter builddependencies: value [('CMake', '3.26.3'), ('Python', '3.11.3'), ('BLIS', '0.9.0')] (type: ) == 2024-03-25 18:26:23,374 easyconfig.py:686 INFO setting easyconfig parameter components: value [('FlexiBLAS', '3.3.1', {'source_urls': ['https://gitlab.mpi-magdeburg.mpg.de/api/v4/projects/386/packages/generic/flexiblas-source/v3.3.1/'], 'sources': ['%(namelower)s-%(version)s.tar.gz'], 'checksums': ['bbeebf5e5a006924558fec43f49affbe1aaa4cbacfc472a9ff6066ffda142e18'], 'backends': ['OpenBLAS', 'BLIS', 'imkl']}), ('LAPACK', '3.11.0', {'easyblock': 'CMakeMake', 'source_urls': ['https://github.com/Reference-LAPACK/lapack/archive/'], 'sources': ['v%(version)s.tar.gz'], 'checksums': ['4b9ba79bfd4921ca820e83979db76ab3363155709444a787979e81c22285ffa9'], 'configopts': '-DBUILD_SHARED_LIBS=ON -DUSE_OPTIMIZED_BLAS=ON -DLAPACKE=ON -DUSE_OPTIMIZED_LAPACK=ON -DBUILD_DEPRECATED=ON -DCMAKE_INSTALL_INCLUDEDIR=%(installdir)s/include/flexiblas', 'sanity_check_paths': {'files': ['lib/liblapacke.so', 'include/flexiblas/lapacke.h'], 'dirs': []}})] (type: ) == 2024-03-25 18:26:23,374 easyconfig.py:686 INFO setting easyconfig parameter default_component_specs: value {'start_dir': '%(namelower)s-%(version)s'} (type: ) == 2024-03-25 18:26:23,374 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('OpenBLAS', '0.3.23')] (type: ) == 2024-03-25 18:26:23,374 easyconfig.py:686 INFO setting easyconfig parameter description: value FlexiBLAS is a wrapper library that enables the exchange of the BLAS and LAPACK implementation used by a program without recompiling or relinking it. (type: ) == 2024-03-25 18:26:23,374 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value Bundle (type: ) == 2024-03-25 18:26:23,374 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://gitlab.mpi-magdeburg.mpg.de/software/flexiblas-release (type: ) == 2024-03-25 18:26:23,374 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value lib (type: ) == 2024-03-25 18:26:23,374 easyconfig.py:686 INFO setting easyconfig parameter name: value FlexiBLAS (type: ) == 2024-03-25 18:26:23,374 easyconfig.py:686 INFO setting easyconfig parameter sanity_check_all_components: value True (type: ) == 2024-03-25 18:26:23,374 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'GCC', 'version': '12.3.0'} (type: ) == 2024-03-25 18:26:23,374 easyconfig.py:686 INFO setting easyconfig parameter toolchainopts: value {'pic': True, 'extra_cflags': '-fstack-protector-strong -fstack-clash-protection', 'extra_fflags': '-fstack-protector-strong -fstack-clash-protection'} (type: ) == 2024-03-25 18:26:23,374 easyconfig.py:686 INFO setting easyconfig parameter version: value 3.3.1 (type: ) == 2024-03-25 18:26:23,374 easyconfig.py:747 INFO Parsing dependency specifications... == 2024-03-25 18:26:23,375 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:26:23,375 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='flexiblas', github_account='flexiblas', name='FlexiBLAS', nameletter='F', nameletterlower='f', namelower='flexiblas', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.3', sysroot='', toolchain_name='GCC', toolchain_version='12.3.0', version='3.3.1', version_major='3', version_major_minor='3.3', version_minor='3', versionprefix='', versionsuffix='' == 2024-03-25 18:26:23,376 modules.py:626 INFO Checking whether CMake/3.26.3-GCC-12.3.0 exists... == 2024-03-25 18:26:23,376 modules.py:647 INFO Module CMake/3.26.3-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,378 modules.py:654 INFO Result for existence check of CMake/3.26.3-GCC-12.3.0 module: False == 2024-03-25 18:26:23,378 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,383 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,383 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'CMake', 'version': '3.26.3', 'versionsuffix': '', 'toolchain': {'name': 'GCC', 'version': '12.3.0'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:26:23,384 modules.py:626 INFO Checking whether Python/3.11.3-GCC-12.3.0 exists... == 2024-03-25 18:26:23,384 modules.py:647 INFO Module Python/3.11.3-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,386 modules.py:654 INFO Result for existence check of Python/3.11.3-GCC-12.3.0 module: False == 2024-03-25 18:26:23,386 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,387 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,387 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.11.3', 'versionsuffix': '', 'toolchain': {'name': 'GCC', 'version': '12.3.0'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:26:23,388 modules.py:626 INFO Checking whether BLIS/0.9.0-GCCcore-12.3.0 exists... == 2024-03-25 18:26:23,388 modules.py:647 INFO Module BLIS/0.9.0-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,389 modules.py:654 INFO Result for existence check of BLIS/0.9.0-GCCcore-12.3.0 module: False == 2024-03-25 18:26:23,389 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,391 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'BLIS', 'version': '0.9.0', 'versionsuffix': '', 'toolchain': {'name': 'GCC', 'version': '12.3.0'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '12.3.0'} == 2024-03-25 18:26:23,392 modules.py:626 INFO Checking whether OpenBLAS/0.3.23-GCCcore-12.3.0 exists... == 2024-03-25 18:26:23,392 modules.py:647 INFO Module OpenBLAS/0.3.23-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,393 modules.py:654 INFO Result for existence check of OpenBLAS/0.3.23-GCCcore-12.3.0 module: False == 2024-03-25 18:26:23,393 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,396 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'OpenBLAS', 'version': '0.3.23', 'versionsuffix': '', 'toolchain': {'name': 'GCC', 'version': '12.3.0'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '12.3.0'} == 2024-03-25 18:26:23,396 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,398 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... == 2024-03-25 18:26:23,398 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') == 2024-03-25 18:26:23,398 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') == 2024-03-25 18:26:23,398 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') == 2024-03-25 18:26:23,398 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') == 2024-03-25 18:26:23,399 modules.py:299 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it == 2024-03-25 18:26:23,399 modules.py:455 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all == 2024-03-25 18:26:23,399 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] == 2024-03-25 18:26:23,412 easyconfig.py:1938 INFO Successfully obtained EB_FFTW class instance from easybuild.easyblocks.fftw == 2024-03-25 18:26:23,413 easyconfig.py:1955 INFO Successfully obtained class 'EB_FFTW' for easyblock 'None' (software name 'FFTW') == 2024-03-25 18:26:23,413 easyconfig.py:705 INFO Parsing easyconfig file /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/f/FFTW/FFTW-3.3.10-GCC-12.3.0.eb with rawcontent: name = 'FFTW' version = '3.3.10' homepage = 'https://www.fftw.org' description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.""" toolchain = {'name': 'GCC', 'version': '12.3.0'} toolchainopts = {'pic': True} source_urls = [homepage] sources = [SOURCELOWER_TAR_GZ] checksums = ['56c932549852cddcfafdab3820b0200c7742675be92179e59e6215b340e26467'] runtest = 'check' moduleclass = 'numlib' == 2024-03-25 18:26:23,413 parser.py:139 INFO Type checking of easyconfig parameter values passed! == 2024-03-25 18:26:23,413 easyconfig.py:686 INFO setting easyconfig parameter checksums: value ['56c932549852cddcfafdab3820b0200c7742675be92179e59e6215b340e26467'] (type: ) == 2024-03-25 18:26:23,413 easyconfig.py:686 INFO setting easyconfig parameter description: value FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data. (type: ) == 2024-03-25 18:26:23,413 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://www.fftw.org (type: ) == 2024-03-25 18:26:23,413 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value numlib (type: ) == 2024-03-25 18:26:23,413 easyconfig.py:686 INFO setting easyconfig parameter name: value FFTW (type: ) == 2024-03-25 18:26:23,413 easyconfig.py:686 INFO setting easyconfig parameter runtest: value check (type: ) == 2024-03-25 18:26:23,413 easyconfig.py:686 INFO setting easyconfig parameter source_urls: value ['https://www.fftw.org'] (type: ) == 2024-03-25 18:26:23,414 easyconfig.py:686 INFO setting easyconfig parameter sources: value ['%(namelower)s-%(version)s.tar.gz'] (type: ) == 2024-03-25 18:26:23,414 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'GCC', 'version': '12.3.0'} (type: ) == 2024-03-25 18:26:23,414 easyconfig.py:686 INFO setting easyconfig parameter toolchainopts: value {'pic': True} (type: ) == 2024-03-25 18:26:23,414 easyconfig.py:686 INFO setting easyconfig parameter version: value 3.3.10 (type: ) == 2024-03-25 18:26:23,414 easyconfig.py:747 INFO Parsing dependency specifications... == 2024-03-25 18:26:23,414 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:26:23,415 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='fftw', github_account='fftw', name='FFTW', nameletter='F', nameletterlower='f', namelower='fftw', sysroot='', toolchain_name='GCC', toolchain_version='12.3.0', version='3.3.10', version_major='3', version_major_minor='3.3', version_minor='3', versionprefix='', versionsuffix='' == 2024-03-25 18:26:23,415 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,416 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... == 2024-03-25 18:26:23,417 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') == 2024-03-25 18:26:23,417 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') == 2024-03-25 18:26:23,417 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') == 2024-03-25 18:26:23,417 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') == 2024-03-25 18:26:23,417 modules.py:299 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it == 2024-03-25 18:26:23,417 modules.py:455 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all == 2024-03-25 18:26:23,417 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] == 2024-03-25 18:26:23,419 easyconfig.py:1938 INFO Successfully obtained EB_FFTW_period_MPI class instance from easybuild.easyblocks.fftwmpi == 2024-03-25 18:26:23,419 easyconfig.py:1955 INFO Successfully obtained class 'EB_FFTW_period_MPI' for easyblock 'None' (software name 'FFTW.MPI') == 2024-03-25 18:26:23,419 easyconfig.py:705 INFO Parsing easyconfig file /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/f/FFTW.MPI/FFTW.MPI-3.3.10-gompi-2023a.eb with rawcontent: name = 'FFTW.MPI' version = '3.3.10' homepage = 'https://www.fftw.org' description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.""" toolchain = {'name': 'gompi', 'version': '2023a'} toolchainopts = {'pic': True} source_urls = [homepage] sources = ['fftw-%(version)s.tar.gz'] checksums = ['56c932549852cddcfafdab3820b0200c7742675be92179e59e6215b340e26467'] dependencies = [('FFTW', '3.3.10')] runtest = 'check' moduleclass = 'numlib' == 2024-03-25 18:26:23,420 parser.py:139 INFO Type checking of easyconfig parameter values passed! == 2024-03-25 18:26:23,420 easyconfig.py:686 INFO setting easyconfig parameter checksums: value ['56c932549852cddcfafdab3820b0200c7742675be92179e59e6215b340e26467'] (type: ) == 2024-03-25 18:26:23,420 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('FFTW', '3.3.10')] (type: ) == 2024-03-25 18:26:23,420 easyconfig.py:686 INFO setting easyconfig parameter description: value FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data. (type: ) == 2024-03-25 18:26:23,420 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://www.fftw.org (type: ) == 2024-03-25 18:26:23,420 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value numlib (type: ) == 2024-03-25 18:26:23,420 easyconfig.py:686 INFO setting easyconfig parameter name: value FFTW.MPI (type: ) == 2024-03-25 18:26:23,420 easyconfig.py:686 INFO setting easyconfig parameter runtest: value check (type: ) == 2024-03-25 18:26:23,420 easyconfig.py:686 INFO setting easyconfig parameter source_urls: value ['https://www.fftw.org'] (type: ) == 2024-03-25 18:26:23,420 easyconfig.py:686 INFO setting easyconfig parameter sources: value ['fftw-%(version)s.tar.gz'] (type: ) == 2024-03-25 18:26:23,420 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'gompi', 'version': '2023a'} (type: ) == 2024-03-25 18:26:23,420 easyconfig.py:686 INFO setting easyconfig parameter toolchainopts: value {'pic': True} (type: ) == 2024-03-25 18:26:23,420 easyconfig.py:686 INFO setting easyconfig parameter version: value 3.3.10 (type: ) == 2024-03-25 18:26:23,420 easyconfig.py:747 INFO Parsing dependency specifications... == 2024-03-25 18:26:23,420 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:26:23,421 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,422 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... == 2024-03-25 18:26:23,423 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') == 2024-03-25 18:26:23,423 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') == 2024-03-25 18:26:23,423 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') == 2024-03-25 18:26:23,423 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') == 2024-03-25 18:26:23,423 modules.py:299 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it == 2024-03-25 18:26:23,423 modules.py:455 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all == 2024-03-25 18:26:23,423 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] == 2024-03-25 18:26:23,424 easyconfig.py:1908 INFO Derived full easyblock module path for Toolchain: easybuild.easyblocks.generic.toolchain == 2024-03-25 18:26:23,424 easyconfig.py:1955 INFO Successfully obtained class 'Toolchain' for easyblock 'Toolchain' (software name 'gompi') == 2024-03-25 18:26:23,424 easyconfig.py:705 INFO Parsing easyconfig file /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/g/gompi/gompi-2023a.eb with rawcontent: easyblock = 'Toolchain' name = 'gompi' version = '2023a' homepage = '(none)' description = """GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.""" toolchain = SYSTEM local_gccver = '12.3.0' # compiler toolchain dependencies dependencies = [ ('GCC', local_gccver), # includes both GCC and binutils ('OpenMPI', '4.1.5', '', ('GCC', local_gccver)), ] moduleclass = 'toolchain' == 2024-03-25 18:26:23,424 parser.py:139 INFO Type checking of easyconfig parameter values passed! == 2024-03-25 18:26:23,425 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('GCC', '12.3.0'), ('OpenMPI', '4.1.5', '', ('GCC', '12.3.0'))] (type: ) == 2024-03-25 18:26:23,425 easyconfig.py:686 INFO setting easyconfig parameter description: value GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support. (type: ) == 2024-03-25 18:26:23,425 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value Toolchain (type: ) == 2024-03-25 18:26:23,425 easyconfig.py:686 INFO setting easyconfig parameter homepage: value (none) (type: ) == 2024-03-25 18:26:23,425 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value toolchain (type: ) == 2024-03-25 18:26:23,425 easyconfig.py:686 INFO setting easyconfig parameter name: value gompi (type: ) == 2024-03-25 18:26:23,425 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'system', 'version': 'system'} (type: ) == 2024-03-25 18:26:23,425 easyconfig.py:686 INFO setting easyconfig parameter version: value 2023a (type: ) == 2024-03-25 18:26:23,425 easyconfig.py:747 INFO Parsing dependency specifications... == 2024-03-25 18:26:23,425 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:26:23,426 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='gompi', github_account='gompi', name='gompi', nameletter='g', nameletterlower='g', namelower='gompi', sysroot='', toolchain_name='system', toolchain_version='system', version='2023a', version_major='2023a', versionprefix='', versionsuffix='' == 2024-03-25 18:26:23,426 easyconfig.py:866 INFO Validating easyconfig == 2024-03-25 18:26:23,426 easyconfig.py:871 INFO Checking OS dependencies == 2024-03-25 18:26:23,426 easyconfig.py:926 INFO OS dependencies ok: [] == 2024-03-25 18:26:23,426 easyconfig.py:876 INFO Checking skipsteps == 2024-03-25 18:26:23,426 easyconfig.py:881 INFO Checking build option lists == 2024-03-25 18:26:23,426 easyconfig.py:884 INFO Checking licenses == 2024-03-25 18:26:23,428 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' == 2024-03-25 18:26:23,428 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) == 2024-03-25 18:26:23,428 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='fftw.mpi', github_account='fftw.mpi', mpi_cmd_prefix='mpirun -n 1', name='FFTW.MPI', nameletter='F', nameletterlower='f', namelower='fftw.mpi', sysroot='', toolchain_name='gompi', toolchain_version='2023a', version='3.3.10', version_major='3', version_major_minor='3.3', version_minor='3', versionprefix='', versionsuffix='' == 2024-03-25 18:26:23,430 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... == 2024-03-25 18:26:23,430 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') == 2024-03-25 18:26:23,430 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') == 2024-03-25 18:26:23,431 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') == 2024-03-25 18:26:23,431 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') == 2024-03-25 18:26:23,431 modules.py:299 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it == 2024-03-25 18:26:23,431 modules.py:455 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all == 2024-03-25 18:26:23,431 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] == 2024-03-25 18:26:23,432 easyconfig.py:1908 INFO Derived full easyblock module path for Toolchain: easybuild.easyblocks.generic.toolchain == 2024-03-25 18:26:23,432 easyconfig.py:1955 INFO Successfully obtained class 'Toolchain' for easyblock 'Toolchain' (software name 'gompi') == 2024-03-25 18:26:23,432 easyconfig.py:705 INFO Parsing easyconfig file /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/g/gompi/gompi-2023a.eb with rawcontent: easyblock = 'Toolchain' name = 'gompi' version = '2023a' homepage = '(none)' description = """GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.""" toolchain = SYSTEM local_gccver = '12.3.0' # compiler toolchain dependencies dependencies = [ ('GCC', local_gccver), # includes both GCC and binutils ('OpenMPI', '4.1.5', '', ('GCC', local_gccver)), ] moduleclass = 'toolchain' == 2024-03-25 18:26:23,432 parser.py:139 INFO Type checking of easyconfig parameter values passed! == 2024-03-25 18:26:23,432 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('GCC', '12.3.0'), ('OpenMPI', '4.1.5', '', ('GCC', '12.3.0'))] (type: ) == 2024-03-25 18:26:23,432 easyconfig.py:686 INFO setting easyconfig parameter description: value GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support. (type: ) == 2024-03-25 18:26:23,432 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value Toolchain (type: ) == 2024-03-25 18:26:23,433 easyconfig.py:686 INFO setting easyconfig parameter homepage: value (none) (type: ) == 2024-03-25 18:26:23,433 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value toolchain (type: ) == 2024-03-25 18:26:23,433 easyconfig.py:686 INFO setting easyconfig parameter name: value gompi (type: ) == 2024-03-25 18:26:23,433 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'system', 'version': 'system'} (type: ) == 2024-03-25 18:26:23,433 easyconfig.py:686 INFO setting easyconfig parameter version: value 2023a (type: ) == 2024-03-25 18:26:23,433 easyconfig.py:747 INFO Parsing dependency specifications... == 2024-03-25 18:26:23,433 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:26:23,433 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='gompi', github_account='gompi', name='gompi', nameletter='g', nameletterlower='g', namelower='gompi', sysroot='', toolchain_name='system', toolchain_version='system', version='2023a', version_major='2023a', versionprefix='', versionsuffix='' == 2024-03-25 18:26:23,435 easyconfig.py:407 INFO Found toolchain hierarchy for toolchain {'name': 'gompi', 'version': '2023a'}: [{'name': 'GCCcore', 'version': '12.3.0'}, {'name': 'GCC', 'version': '12.3.0'}, {'name': 'gompi', 'version': '2023a'}] == 2024-03-25 18:26:23,435 modules.py:626 INFO Checking whether FFTW/3.3.10-gompi-2023a exists... == 2024-03-25 18:26:23,435 modules.py:647 INFO Module FFTW/3.3.10-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,436 modules.py:654 INFO Result for existence check of FFTW/3.3.10-gompi-2023a module: False == 2024-03-25 18:26:23,436 modules.py:626 INFO Checking whether FFTW/3.3.10-GCCcore-12.3.0 exists... == 2024-03-25 18:26:23,436 modules.py:647 INFO Module FFTW/3.3.10-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,437 modules.py:654 INFO Result for existence check of FFTW/3.3.10-GCCcore-12.3.0 module: False == 2024-03-25 18:26:23,437 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,437 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'FFTW', 'version': '3.3.10', 'versionsuffix': '', 'toolchain': {'name': 'gompi', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '12.3.0'} == 2024-03-25 18:26:23,438 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,453 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... == 2024-03-25 18:26:23,454 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') == 2024-03-25 18:26:23,454 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') == 2024-03-25 18:26:23,454 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') == 2024-03-25 18:26:23,454 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') == 2024-03-25 18:26:23,454 modules.py:299 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it == 2024-03-25 18:26:23,454 modules.py:455 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all == 2024-03-25 18:26:23,454 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] == 2024-03-25 18:26:23,495 easyconfig.py:1938 INFO Successfully obtained EB_ScaLAPACK class instance from easybuild.easyblocks.scalapack == 2024-03-25 18:26:23,495 easyconfig.py:1955 INFO Successfully obtained class 'EB_ScaLAPACK' for easyblock 'None' (software name 'ScaLAPACK') == 2024-03-25 18:26:23,496 easyconfig.py:705 INFO Parsing easyconfig file /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.2.0-gompi-2023a-fb.eb with rawcontent: name = 'ScaLAPACK' version = '2.2.0' versionsuffix = '-fb' homepage = 'https://www.netlib.org/scalapack/' description = """The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.""" toolchain = {'name': 'gompi', 'version': '2023a'} toolchainopts = {'extra_fflags': '-lpthread', 'openmp': True, 'pic': True, 'usempi': True} source_urls = [homepage] sources = [SOURCELOWER_TGZ] patches = ['ScaLAPACK-%(version)s_fix-GCC-10.patch'] checksums = [ '40b9406c20735a9a3009d863318cb8d3e496fb073d201c5463df810e01ab2a57', # scalapack-2.2.0.tgz 'f6bc3c6dee012ba4a696548a2e12b6aae932ce4fd5a142153b338839f52b5906', # ScaLAPACK-2.2.0_fix-GCC-10.patch ] builddependencies = [ ('CMake', '3.26.3'), ] dependencies = [ ('FlexiBLAS', '3.3.1'), ] # Config Opts based on AOCL User Guide: # https://developer.amd.com/wp-content/resources/AOCL_User%20Guide_2.2.pdf configopts = '-DBUILD_SHARED_LIBS=ON ' configopts += '-DBLAS_LIBRARIES="$EBROOTFLEXIBLAS/lib/libflexiblas.%s" ' % SHLIB_EXT configopts += '-DLAPACK_LIBRARIES="$EBROOTFLEXIBLAS/lib/libflexiblas.%s" ' % SHLIB_EXT sanity_check_paths = { 'files': ['lib/libscalapack.%s' % SHLIB_EXT, 'lib64/libscalapack.%s' % SHLIB_EXT], 'dirs': ["lib", "lib64"], } moduleclass = 'numlib' == 2024-03-25 18:26:23,496 parser.py:139 INFO Type checking of easyconfig parameter values passed! == 2024-03-25 18:26:23,496 easyconfig.py:686 INFO setting easyconfig parameter builddependencies: value [('CMake', '3.26.3')] (type: ) == 2024-03-25 18:26:23,496 easyconfig.py:686 INFO setting easyconfig parameter checksums: value ['40b9406c20735a9a3009d863318cb8d3e496fb073d201c5463df810e01ab2a57', 'f6bc3c6dee012ba4a696548a2e12b6aae932ce4fd5a142153b338839f52b5906'] (type: ) == 2024-03-25 18:26:23,496 easyconfig.py:686 INFO setting easyconfig parameter configopts: value -DBUILD_SHARED_LIBS=ON -DBLAS_LIBRARIES="$EBROOTFLEXIBLAS/lib/libflexiblas.so" -DLAPACK_LIBRARIES="$EBROOTFLEXIBLAS/lib/libflexiblas.so" (type: ) == 2024-03-25 18:26:23,496 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('FlexiBLAS', '3.3.1')] (type: ) == 2024-03-25 18:26:23,496 easyconfig.py:686 INFO setting easyconfig parameter description: value The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers. (type: ) == 2024-03-25 18:26:23,496 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://www.netlib.org/scalapack/ (type: ) == 2024-03-25 18:26:23,496 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value numlib (type: ) == 2024-03-25 18:26:23,496 easyconfig.py:686 INFO setting easyconfig parameter name: value ScaLAPACK (type: ) == 2024-03-25 18:26:23,496 easyconfig.py:686 INFO setting easyconfig parameter patches: value ['ScaLAPACK-%(version)s_fix-GCC-10.patch'] (type: ) == 2024-03-25 18:26:23,496 easyconfig.py:686 INFO setting easyconfig parameter sanity_check_paths: value {'files': ['lib/libscalapack.so', 'lib64/libscalapack.so'], 'dirs': ['lib', 'lib64']} (type: ) == 2024-03-25 18:26:23,497 easyconfig.py:686 INFO setting easyconfig parameter source_urls: value ['https://www.netlib.org/scalapack/'] (type: ) == 2024-03-25 18:26:23,497 easyconfig.py:686 INFO setting easyconfig parameter sources: value ['%(namelower)s-%(version)s.tgz'] (type: ) == 2024-03-25 18:26:23,497 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'gompi', 'version': '2023a'} (type: ) == 2024-03-25 18:26:23,497 easyconfig.py:686 INFO setting easyconfig parameter toolchainopts: value {'extra_fflags': '-lpthread', 'openmp': True, 'pic': True, 'usempi': True} (type: ) == 2024-03-25 18:26:23,497 easyconfig.py:686 INFO setting easyconfig parameter version: value 2.2.0 (type: ) == 2024-03-25 18:26:23,497 easyconfig.py:686 INFO setting easyconfig parameter versionsuffix: value -fb (type: ) == 2024-03-25 18:26:23,497 easyconfig.py:747 INFO Parsing dependency specifications... == 2024-03-25 18:26:23,497 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:26:23,498 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' == 2024-03-25 18:26:23,498 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) == 2024-03-25 18:26:23,498 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='scalapack', github_account='scalapack', mpi_cmd_prefix='mpirun -n 1', name='ScaLAPACK', nameletter='S', nameletterlower='s', namelower='scalapack', sysroot='', toolchain_name='gompi', toolchain_version='2023a', version='2.2.0', version_major='2', version_major_minor='2.2', version_minor='2', versionprefix='', versionsuffix='-fb' == 2024-03-25 18:26:23,499 modules.py:626 INFO Checking whether CMake/3.26.3-gompi-2023a exists... == 2024-03-25 18:26:23,499 modules.py:647 INFO Module CMake/3.26.3-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,500 modules.py:654 INFO Result for existence check of CMake/3.26.3-gompi-2023a module: False == 2024-03-25 18:26:23,500 modules.py:626 INFO Checking whether CMake/3.26.3-GCC-12.3.0 exists... == 2024-03-25 18:26:23,500 modules.py:647 INFO Module CMake/3.26.3-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,500 modules.py:654 INFO Result for existence check of CMake/3.26.3-GCC-12.3.0 module: False == 2024-03-25 18:26:23,500 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,500 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,500 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'CMake', 'version': '3.26.3', 'versionsuffix': '', 'toolchain': {'name': 'gompi', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:26:23,501 modules.py:626 INFO Checking whether FlexiBLAS/3.3.1-gompi-2023a exists... == 2024-03-25 18:26:23,502 modules.py:647 INFO Module FlexiBLAS/3.3.1-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,502 modules.py:654 INFO Result for existence check of FlexiBLAS/3.3.1-gompi-2023a module: False == 2024-03-25 18:26:23,502 modules.py:626 INFO Checking whether FlexiBLAS/3.3.1-GCCcore-12.3.0 exists... == 2024-03-25 18:26:23,503 modules.py:647 INFO Module FlexiBLAS/3.3.1-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,503 modules.py:654 INFO Result for existence check of FlexiBLAS/3.3.1-GCCcore-12.3.0 module: False == 2024-03-25 18:26:23,503 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,503 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'FlexiBLAS', 'version': '3.3.1', 'versionsuffix': '', 'toolchain': {'name': 'gompi', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '12.3.0'} == 2024-03-25 18:26:23,504 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,505 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,506 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... == 2024-03-25 18:26:23,507 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') == 2024-03-25 18:26:23,507 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') == 2024-03-25 18:26:23,507 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') == 2024-03-25 18:26:23,507 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') == 2024-03-25 18:26:23,507 modules.py:299 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it == 2024-03-25 18:26:23,507 modules.py:455 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all == 2024-03-25 18:26:23,508 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] == 2024-03-25 18:26:23,508 easyconfig.py:1908 INFO Derived full easyblock module path for Toolchain: easybuild.easyblocks.generic.toolchain == 2024-03-25 18:26:23,508 easyconfig.py:1955 INFO Successfully obtained class 'Toolchain' for easyblock 'Toolchain' (software name 'gfbf') == 2024-03-25 18:26:23,508 easyconfig.py:705 INFO Parsing easyconfig file /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/g/gfbf/gfbf-2023a.eb with rawcontent: easyblock = 'Toolchain' name = 'gfbf' version = '2023a' homepage = '(none)' description = """GNU Compiler Collection (GCC) based compiler toolchain, including FlexiBLAS (BLAS and LAPACK support) and (serial) FFTW.""" toolchain = SYSTEM local_gccver = '12.3.0' dependencies = [ ('GCC', local_gccver), ('FlexiBLAS', '3.3.1', '', ('GCC', local_gccver)), ('FFTW', '3.3.10', '', ('GCC', local_gccver)), ] moduleclass = 'toolchain' == 2024-03-25 18:26:23,509 parser.py:139 INFO Type checking of easyconfig parameter values passed! == 2024-03-25 18:26:23,509 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('GCC', '12.3.0'), ('FlexiBLAS', '3.3.1', '', ('GCC', '12.3.0')), ('FFTW', '3.3.10', '', ('GCC', '12.3.0'))] (type: ) == 2024-03-25 18:26:23,509 easyconfig.py:686 INFO setting easyconfig parameter description: value GNU Compiler Collection (GCC) based compiler toolchain, including FlexiBLAS (BLAS and LAPACK support) and (serial) FFTW. (type: ) == 2024-03-25 18:26:23,509 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value Toolchain (type: ) == 2024-03-25 18:26:23,509 easyconfig.py:686 INFO setting easyconfig parameter homepage: value (none) (type: ) == 2024-03-25 18:26:23,509 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value toolchain (type: ) == 2024-03-25 18:26:23,509 easyconfig.py:686 INFO setting easyconfig parameter name: value gfbf (type: ) == 2024-03-25 18:26:23,509 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'system', 'version': 'system'} (type: ) == 2024-03-25 18:26:23,509 easyconfig.py:686 INFO setting easyconfig parameter version: value 2023a (type: ) == 2024-03-25 18:26:23,509 easyconfig.py:747 INFO Parsing dependency specifications... == 2024-03-25 18:26:23,509 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:26:23,510 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='gfbf', github_account='gfbf', name='gfbf', nameletter='g', nameletterlower='g', namelower='gfbf', sysroot='', toolchain_name='system', toolchain_version='system', version='2023a', version_major='2023a', versionprefix='', versionsuffix='' == 2024-03-25 18:26:23,512 easyconfig.py:407 INFO Found toolchain hierarchy for toolchain {'name': 'foss', 'version': '2023a'}: [{'name': 'GCCcore', 'version': '12.3.0'}, {'name': 'GCC', 'version': '12.3.0'}, {'name': 'gfbf', 'version': '2023a'}, {'name': 'gompi', 'version': '2023a'}, {'name': 'foss', 'version': '2023a'}] == 2024-03-25 18:26:23,512 modules.py:626 INFO Checking whether CMake/3.26.3-foss-2023a exists... == 2024-03-25 18:26:23,512 modules.py:647 INFO Module CMake/3.26.3-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,513 modules.py:654 INFO Result for existence check of CMake/3.26.3-foss-2023a module: False == 2024-03-25 18:26:23,513 modules.py:626 INFO Checking whether CMake/3.26.3-gompi-2023a exists... == 2024-03-25 18:26:23,513 modules.py:647 INFO Module CMake/3.26.3-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,513 modules.py:654 INFO Result for existence check of CMake/3.26.3-gompi-2023a module: False == 2024-03-25 18:26:23,513 modules.py:626 INFO Checking whether CMake/3.26.3-gfbf-2023a exists... == 2024-03-25 18:26:23,513 modules.py:647 INFO Module CMake/3.26.3-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,514 modules.py:654 INFO Result for existence check of CMake/3.26.3-gfbf-2023a module: False == 2024-03-25 18:26:23,514 modules.py:626 INFO Checking whether CMake/3.26.3-GCC-12.3.0 exists... == 2024-03-25 18:26:23,514 modules.py:647 INFO Module CMake/3.26.3-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,514 modules.py:654 INFO Result for existence check of CMake/3.26.3-GCC-12.3.0 module: False == 2024-03-25 18:26:23,515 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,515 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,515 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,515 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,515 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'CMake', 'version': '3.26.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:26:23,516 modules.py:626 INFO Checking whether Python/3.11.3-foss-2023a exists... == 2024-03-25 18:26:23,516 modules.py:647 INFO Module Python/3.11.3-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,517 modules.py:654 INFO Result for existence check of Python/3.11.3-foss-2023a module: False == 2024-03-25 18:26:23,517 modules.py:626 INFO Checking whether Python/3.11.3-gompi-2023a exists... == 2024-03-25 18:26:23,517 modules.py:647 INFO Module Python/3.11.3-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,518 modules.py:654 INFO Result for existence check of Python/3.11.3-gompi-2023a module: False == 2024-03-25 18:26:23,518 modules.py:626 INFO Checking whether Python/3.11.3-gfbf-2023a exists... == 2024-03-25 18:26:23,518 modules.py:647 INFO Module Python/3.11.3-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,519 modules.py:654 INFO Result for existence check of Python/3.11.3-gfbf-2023a module: False == 2024-03-25 18:26:23,519 modules.py:626 INFO Checking whether Python/3.11.3-GCC-12.3.0 exists... == 2024-03-25 18:26:23,519 modules.py:647 INFO Module Python/3.11.3-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,519 modules.py:654 INFO Result for existence check of Python/3.11.3-GCC-12.3.0 module: False == 2024-03-25 18:26:23,519 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,520 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,520 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,520 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,520 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.11.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:26:23,521 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-foss-2023a exists... == 2024-03-25 18:26:23,521 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,522 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-foss-2023a module: False == 2024-03-25 18:26:23,522 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-gompi-2023a exists... == 2024-03-25 18:26:23,522 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,523 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-gompi-2023a module: False == 2024-03-25 18:26:23,523 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-gfbf-2023a exists... == 2024-03-25 18:26:23,523 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,524 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-gfbf-2023a module: False == 2024-03-25 18:26:23,524 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-GCC-12.3.0 exists... == 2024-03-25 18:26:23,524 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,525 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-GCC-12.3.0 module: False == 2024-03-25 18:26:23,525 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,525 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,525 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,525 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,525 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,526 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python-bundle-PyPI', 'version': '2023.06', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:26:23,527 modules.py:626 INFO Checking whether Biopython/1.83-gompi-2023a exists... == 2024-03-25 18:26:23,527 modules.py:647 INFO Module Biopython/1.83-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,529 modules.py:654 INFO Result for existence check of Biopython/1.83-gompi-2023a module: False == 2024-03-25 18:26:23,529 modules.py:626 INFO Checking whether Biopython/1.83-gfbf-2023a exists... == 2024-03-25 18:26:23,529 modules.py:647 INFO Module Biopython/1.83-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,530 modules.py:654 INFO Result for existence check of Biopython/1.83-gfbf-2023a module: False == 2024-03-25 18:26:23,530 modules.py:626 INFO Checking whether Biopython/1.83-GCC-12.3.0 exists... == 2024-03-25 18:26:23,530 modules.py:647 INFO Module Biopython/1.83-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,531 modules.py:654 INFO Result for existence check of Biopython/1.83-GCC-12.3.0 module: False == 2024-03-25 18:26:23,531 modules.py:626 INFO Checking whether Biopython/1.83-GCCcore-12.3.0 exists... == 2024-03-25 18:26:23,531 modules.py:647 INFO Module Biopython/1.83-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,532 modules.py:654 INFO Result for existence check of Biopython/1.83-GCCcore-12.3.0 module: False == 2024-03-25 18:26:23,532 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,533 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Biopython', 'version': '1.83', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2023a'} == 2024-03-25 18:26:23,534 modules.py:626 INFO Checking whether scikit-build/0.17.6-foss-2023a exists... == 2024-03-25 18:26:23,534 modules.py:647 INFO Module scikit-build/0.17.6-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,535 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-foss-2023a module: False == 2024-03-25 18:26:23,536 modules.py:626 INFO Checking whether scikit-build/0.17.6-gompi-2023a exists... == 2024-03-25 18:26:23,536 modules.py:647 INFO Module scikit-build/0.17.6-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,536 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-gompi-2023a module: False == 2024-03-25 18:26:23,536 modules.py:626 INFO Checking whether scikit-build/0.17.6-gfbf-2023a exists... == 2024-03-25 18:26:23,537 modules.py:647 INFO Module scikit-build/0.17.6-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,537 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-gfbf-2023a module: False == 2024-03-25 18:26:23,537 modules.py:626 INFO Checking whether scikit-build/0.17.6-GCC-12.3.0 exists... == 2024-03-25 18:26:23,537 modules.py:647 INFO Module scikit-build/0.17.6-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,538 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-GCC-12.3.0 module: False == 2024-03-25 18:26:23,538 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,539 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,539 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,539 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,539 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,540 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-build', 'version': '0.17.6', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:26:23,541 modules.py:626 INFO Checking whether bokeh/3.2.2-gompi-2023a exists... == 2024-03-25 18:26:23,541 modules.py:647 INFO Module bokeh/3.2.2-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,542 modules.py:654 INFO Result for existence check of bokeh/3.2.2-gompi-2023a module: False == 2024-03-25 18:26:23,542 modules.py:626 INFO Checking whether bokeh/3.2.2-gfbf-2023a exists... == 2024-03-25 18:26:23,542 modules.py:647 INFO Module bokeh/3.2.2-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,543 modules.py:654 INFO Result for existence check of bokeh/3.2.2-gfbf-2023a module: False == 2024-03-25 18:26:23,543 modules.py:626 INFO Checking whether bokeh/3.2.2-GCC-12.3.0 exists... == 2024-03-25 18:26:23,543 modules.py:647 INFO Module bokeh/3.2.2-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,544 modules.py:654 INFO Result for existence check of bokeh/3.2.2-GCC-12.3.0 module: False == 2024-03-25 18:26:23,544 modules.py:626 INFO Checking whether bokeh/3.2.2-GCCcore-12.3.0 exists... == 2024-03-25 18:26:23,544 modules.py:647 INFO Module bokeh/3.2.2-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,545 modules.py:654 INFO Result for existence check of bokeh/3.2.2-GCCcore-12.3.0 module: False == 2024-03-25 18:26:23,545 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,546 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'bokeh', 'version': '3.2.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2023a'} == 2024-03-25 18:26:23,547 modules.py:626 INFO Checking whether matplotlib/3.7.2-foss-2023a exists... == 2024-03-25 18:26:23,547 modules.py:647 INFO Module matplotlib/3.7.2-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,548 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-foss-2023a module: False == 2024-03-25 18:26:23,549 modules.py:626 INFO Checking whether matplotlib/3.7.2-gompi-2023a exists... == 2024-03-25 18:26:23,549 modules.py:647 INFO Module matplotlib/3.7.2-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,549 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-gompi-2023a module: False == 2024-03-25 18:26:23,550 modules.py:626 INFO Checking whether matplotlib/3.7.2-GCC-12.3.0 exists... == 2024-03-25 18:26:23,550 modules.py:647 INFO Module matplotlib/3.7.2-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,550 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-GCC-12.3.0 module: False == 2024-03-25 18:26:23,550 modules.py:626 INFO Checking whether matplotlib/3.7.2-GCCcore-12.3.0 exists... == 2024-03-25 18:26:23,551 modules.py:647 INFO Module matplotlib/3.7.2-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,551 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-GCCcore-12.3.0 module: False == 2024-03-25 18:26:23,551 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,552 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,552 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,553 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'matplotlib', 'version': '3.7.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'gfbf', 'version': '2023a'} == 2024-03-25 18:26:23,554 modules.py:626 INFO Checking whether networkx/3.1-foss-2023a exists... == 2024-03-25 18:26:23,554 modules.py:647 INFO Module networkx/3.1-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,555 modules.py:654 INFO Result for existence check of networkx/3.1-foss-2023a module: False == 2024-03-25 18:26:23,556 modules.py:626 INFO Checking whether networkx/3.1-gompi-2023a exists... == 2024-03-25 18:26:23,556 modules.py:647 INFO Module networkx/3.1-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,556 modules.py:654 INFO Result for existence check of networkx/3.1-gompi-2023a module: False == 2024-03-25 18:26:23,557 modules.py:626 INFO Checking whether networkx/3.1-GCC-12.3.0 exists... == 2024-03-25 18:26:23,557 modules.py:647 INFO Module networkx/3.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,557 modules.py:654 INFO Result for existence check of networkx/3.1-GCC-12.3.0 module: False == 2024-03-25 18:26:23,558 modules.py:626 INFO Checking whether networkx/3.1-GCCcore-12.3.0 exists... == 2024-03-25 18:26:23,558 modules.py:647 INFO Module networkx/3.1-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,558 modules.py:654 INFO Result for existence check of networkx/3.1-GCCcore-12.3.0 module: False == 2024-03-25 18:26:23,558 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,560 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,560 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,560 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '3.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'gfbf', 'version': '2023a'} == 2024-03-25 18:26:23,561 modules.py:626 INFO Checking whether numba/0.58.1-gompi-2023a exists... == 2024-03-25 18:26:23,561 modules.py:647 INFO Module numba/0.58.1-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,563 modules.py:654 INFO Result for existence check of numba/0.58.1-gompi-2023a module: False == 2024-03-25 18:26:23,563 modules.py:626 INFO Checking whether numba/0.58.1-gfbf-2023a exists... == 2024-03-25 18:26:23,563 modules.py:647 INFO Module numba/0.58.1-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,564 modules.py:654 INFO Result for existence check of numba/0.58.1-gfbf-2023a module: False == 2024-03-25 18:26:23,564 modules.py:626 INFO Checking whether numba/0.58.1-GCC-12.3.0 exists... == 2024-03-25 18:26:23,564 modules.py:647 INFO Module numba/0.58.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,565 modules.py:654 INFO Result for existence check of numba/0.58.1-GCC-12.3.0 module: False == 2024-03-25 18:26:23,565 modules.py:626 INFO Checking whether numba/0.58.1-GCCcore-12.3.0 exists... == 2024-03-25 18:26:23,565 modules.py:647 INFO Module numba/0.58.1-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,566 modules.py:654 INFO Result for existence check of numba/0.58.1-GCCcore-12.3.0 module: False == 2024-03-25 18:26:23,566 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,567 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.58.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2023a'} == 2024-03-25 18:26:23,568 modules.py:626 INFO Checking whether Pysam/0.22.0-foss-2023a exists... == 2024-03-25 18:26:23,568 modules.py:647 INFO Module Pysam/0.22.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,569 modules.py:654 INFO Result for existence check of Pysam/0.22.0-foss-2023a module: False == 2024-03-25 18:26:23,570 modules.py:626 INFO Checking whether Pysam/0.22.0-gompi-2023a exists... == 2024-03-25 18:26:23,570 modules.py:647 INFO Module Pysam/0.22.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,570 modules.py:654 INFO Result for existence check of Pysam/0.22.0-gompi-2023a module: False == 2024-03-25 18:26:23,571 modules.py:626 INFO Checking whether Pysam/0.22.0-gfbf-2023a exists... == 2024-03-25 18:26:23,571 modules.py:647 INFO Module Pysam/0.22.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,571 modules.py:654 INFO Result for existence check of Pysam/0.22.0-gfbf-2023a module: False == 2024-03-25 18:26:23,571 modules.py:626 INFO Checking whether Pysam/0.22.0-GCCcore-12.3.0 exists... == 2024-03-25 18:26:23,572 modules.py:647 INFO Module Pysam/0.22.0-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,572 modules.py:654 INFO Result for existence check of Pysam/0.22.0-GCCcore-12.3.0 module: False == 2024-03-25 18:26:23,572 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,573 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,573 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,573 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,574 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Pysam', 'version': '0.22.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '12.3.0'} == 2024-03-25 18:26:23,575 modules.py:626 INFO Checking whether PyYAML/6.0-foss-2023a exists... == 2024-03-25 18:26:23,575 modules.py:647 INFO Module PyYAML/6.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,579 modules.py:654 INFO Result for existence check of PyYAML/6.0-foss-2023a module: False == 2024-03-25 18:26:23,579 modules.py:626 INFO Checking whether PyYAML/6.0-gompi-2023a exists... == 2024-03-25 18:26:23,579 modules.py:647 INFO Module PyYAML/6.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,580 modules.py:654 INFO Result for existence check of PyYAML/6.0-gompi-2023a module: False == 2024-03-25 18:26:23,580 modules.py:626 INFO Checking whether PyYAML/6.0-gfbf-2023a exists... == 2024-03-25 18:26:23,580 modules.py:647 INFO Module PyYAML/6.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,581 modules.py:654 INFO Result for existence check of PyYAML/6.0-gfbf-2023a module: False == 2024-03-25 18:26:23,581 modules.py:626 INFO Checking whether PyYAML/6.0-GCC-12.3.0 exists... == 2024-03-25 18:26:23,581 modules.py:647 INFO Module PyYAML/6.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,582 modules.py:654 INFO Result for existence check of PyYAML/6.0-GCC-12.3.0 module: False == 2024-03-25 18:26:23,582 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,582 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,583 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,583 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,583 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,584 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyYAML', 'version': '6.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:26:23,585 modules.py:626 INFO Checking whether typing-extensions/4.9.0-foss-2023a exists... == 2024-03-25 18:26:23,585 modules.py:647 INFO Module typing-extensions/4.9.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,586 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-foss-2023a module: False == 2024-03-25 18:26:23,586 modules.py:626 INFO Checking whether typing-extensions/4.9.0-gompi-2023a exists... == 2024-03-25 18:26:23,586 modules.py:647 INFO Module typing-extensions/4.9.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,587 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-gompi-2023a module: False == 2024-03-25 18:26:23,587 modules.py:626 INFO Checking whether typing-extensions/4.9.0-gfbf-2023a exists... == 2024-03-25 18:26:23,587 modules.py:647 INFO Module typing-extensions/4.9.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,588 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-gfbf-2023a module: False == 2024-03-25 18:26:23,588 modules.py:626 INFO Checking whether typing-extensions/4.9.0-GCC-12.3.0 exists... == 2024-03-25 18:26:23,588 modules.py:647 INFO Module typing-extensions/4.9.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,589 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-GCC-12.3.0 module: False == 2024-03-25 18:26:23,589 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,591 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,591 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,591 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,591 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,591 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'typing-extensions', 'version': '4.9.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:26:23,592 modules.py:626 INFO Checking whether tqdm/4.66.1-foss-2023a exists... == 2024-03-25 18:26:23,592 modules.py:647 INFO Module tqdm/4.66.1-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,594 modules.py:654 INFO Result for existence check of tqdm/4.66.1-foss-2023a module: False == 2024-03-25 18:26:23,594 modules.py:626 INFO Checking whether tqdm/4.66.1-gompi-2023a exists... == 2024-03-25 18:26:23,594 modules.py:647 INFO Module tqdm/4.66.1-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,595 modules.py:654 INFO Result for existence check of tqdm/4.66.1-gompi-2023a module: False == 2024-03-25 18:26:23,595 modules.py:626 INFO Checking whether tqdm/4.66.1-gfbf-2023a exists... == 2024-03-25 18:26:23,595 modules.py:647 INFO Module tqdm/4.66.1-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,595 modules.py:654 INFO Result for existence check of tqdm/4.66.1-gfbf-2023a module: False == 2024-03-25 18:26:23,596 modules.py:626 INFO Checking whether tqdm/4.66.1-GCC-12.3.0 exists... == 2024-03-25 18:26:23,596 modules.py:647 INFO Module tqdm/4.66.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,596 modules.py:654 INFO Result for existence check of tqdm/4.66.1-GCC-12.3.0 module: False == 2024-03-25 18:26:23,597 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,597 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,597 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,597 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,597 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,598 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'tqdm', 'version': '4.66.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:26:23,599 modules.py:626 INFO Checking whether hatchling/1.18.0-foss-2023a exists... == 2024-03-25 18:26:23,599 modules.py:647 INFO Module hatchling/1.18.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,601 modules.py:654 INFO Result for existence check of hatchling/1.18.0-foss-2023a module: False == 2024-03-25 18:26:23,601 modules.py:626 INFO Checking whether hatchling/1.18.0-gompi-2023a exists... == 2024-03-25 18:26:23,601 modules.py:647 INFO Module hatchling/1.18.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,602 modules.py:654 INFO Result for existence check of hatchling/1.18.0-gompi-2023a module: False == 2024-03-25 18:26:23,602 modules.py:626 INFO Checking whether hatchling/1.18.0-gfbf-2023a exists... == 2024-03-25 18:26:23,602 modules.py:647 INFO Module hatchling/1.18.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,603 modules.py:654 INFO Result for existence check of hatchling/1.18.0-gfbf-2023a module: False == 2024-03-25 18:26:23,603 modules.py:626 INFO Checking whether hatchling/1.18.0-GCC-12.3.0 exists... == 2024-03-25 18:26:23,603 modules.py:647 INFO Module hatchling/1.18.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:26:23,603 modules.py:654 INFO Result for existence check of hatchling/1.18.0-GCC-12.3.0 module: False == 2024-03-25 18:26:23,603 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,604 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,604 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,604 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,604 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:26:23,605 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'hatchling', 'version': '1.18.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:26:23,605 easyconfig.py:866 INFO Validating easyconfig == 2024-03-25 18:26:23,605 easyconfig.py:871 INFO Checking OS dependencies == 2024-03-25 18:26:23,605 easyconfig.py:926 INFO OS dependencies ok: [] == 2024-03-25 18:26:23,605 easyconfig.py:876 INFO Checking skipsteps == 2024-03-25 18:26:23,605 easyconfig.py:881 INFO Checking build option lists == 2024-03-25 18:26:23,605 easyconfig.py:884 INFO Checking licenses == 2024-03-25 18:26:23,606 build_log.py:267 INFO resolving dependencies ... == 2024-03-25 18:26:23,608 robot.py:471 INFO Dependency resolution complete, building as follows: [{'ec': , 'spec': '/kyukon/data/gent/470/vsc47063/vsc-software-stack/214_Single-cell_python_bundle/cassiopeia_pybundle.eb', 'short_mod_name': 'Cassiopeia/2.0.0-foss-2023a', 'full_mod_name': 'Cassiopeia/2.0.0-foss-2023a', 'dependencies': [], 'builddependencies': [{'full_mod_name': 'CMake/3.26.3-GCCcore-12.3.0', 'short_mod_name': 'CMake/3.26.3-GCCcore-12.3.0', 'name': 'CMake', 'version': '3.26.3', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '12.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}], 'hiddendependencies': [], 'hidden': False}] == 2024-03-25 18:26:23,608 build_log.py:267 INFO processing EasyBuild easyconfig /kyukon/data/gent/470/vsc47063/vsc-software-stack/214_Single-cell_python_bundle/cassiopeia_pybundle.eb == 2024-03-25 18:26:23,608 easyblock.py:4216 INFO Resetting environment == 2024-03-25 18:26:23,609 environment.py:114 INFO Unsetting environment variable PYTHONOPTIMIZE (value: 1) == 2024-03-25 18:26:23,609 environment.py:114 INFO Unsetting environment variable PYTHONPATH (value: /user/gent/470/vsc47063/easybuild/easybuild-framework:/user/gent/470/vsc47063/easybuild/easybuild-easyblocks:/user/gent/470/vsc47063/easybuild/easybuild-easyconfigs::) == 2024-03-25 18:26:23,609 environment.py:114 INFO Unsetting environment variable PYTHON_KEYRING_BACKEND (value: keyrings.alt.file.PlaintextKeyring) == 2024-03-25 18:26:23,609 easyconfig.py:1908 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle == 2024-03-25 18:26:23,609 easyconfig.py:1955 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'Cassiopeia') == 2024-03-25 18:26:23,610 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') == 2024-03-25 18:26:23,610 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') == 2024-03-25 18:26:23,610 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') == 2024-03-25 18:26:23,610 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') == 2024-03-25 18:26:23,610 modules.py:299 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it == 2024-03-25 18:26:23,610 modules.py:455 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all == 2024-03-25 18:26:23,611 easyblock.py:313 INFO This is EasyBuild 4.9.1.dev0-r99173c4ad927595100d0124228b2e1007bce7413 (framework: 4.9.1.dev0-r92d29680fb5d14086943c96a9efcd2558093f6ae, easyblocks: 4.9.1.dev0-r99173c4ad927595100d0124228b2e1007bce7413) on host node4013.donphan.os. == 2024-03-25 18:26:23,611 easyblock.py:319 INFO This is easyblock PythonBundle from module easybuild.easyblocks.generic.pythonbundle (/user/gent/470/vsc47063/easybuild/easybuild-easyblocks/easybuild/easyblocks/generic/pythonbundle.py) == 2024-03-25 18:26:23,611 easyblock.py:1056 INFO Build dir set to /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a == 2024-03-25 18:26:23,611 easyblock.py:1113 INFO Software install dir set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a == 2024-03-25 18:26:23,611 easyblock.py:1118 INFO Module install dir set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all == 2024-03-25 18:26:23,611 easyblock.py:288 INFO Init completed for application name Cassiopeia version 2.0.0 == 2024-03-25 18:26:23,612 pythonbundle.py:73 INFO Detection of downloaded extension dependencies is enabled == 2024-03-25 18:26:23,612 pythonbundle.py:75 INFO exts_default_options: {'buildcmd': None, 'check_ldshared': None, 'download_dep_fail': True, 'install_src': None, 'install_target': 'install', 'pip_ignore_installed': True, 'pip_no_index': None, 'pip_verbose': None, 'req_py_majver': None, 'req_py_minver': None, 'sanity_pip_check': True, 'runtest': True, 'testinstall': False, 'unpack_sources': None, 'unversioned_packages': [], 'use_pip': True, 'use_pip_editable': False, 'use_pip_extras': None, 'use_pip_for_deps': False, 'use_pip_requirement': False, 'zipped_egg': False, 'source_urls': ['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s'], 'options': {}} == 2024-03-25 18:26:23,612 easyblock.py:4234 INFO Obtained application instance of for Cassiopeia (easyblock: PythonBundle) == 2024-03-25 18:26:23,612 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:26:23,612 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' == 2024-03-25 18:26:23,612 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) == 2024-03-25 18:26:23,612 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='cassiopeia', github_account='cassiopeia', module_name='Cassiopeia/2.0.0-foss-2023a', mpi_cmd_prefix='mpirun -n 1', name='Cassiopeia', nameletter='C', nameletterlower='c', namelower='cassiopeia', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.3', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='2.0.0', version_major='2', version_major_minor='2.0', version_minor='0', versionprefix='', versionsuffix='' == 2024-03-25 18:26:23,614 one.py:180 INFO Skipping reformatting value for parameter 'toolchain' == 2024-03-25 18:26:23,615 filetools.py:1911 INFO Creating directory /tmp/vsc47063/eb-78i3uhl1/reprod_20240325182623_2817089 (parents: True, set_gid: False, sticky: False) == 2024-03-25 18:26:23,615 easyblock.py:4488 INFO Dumped easyconfig instance to /tmp/vsc47063/eb-78i3uhl1/reprod_20240325182623_2817089/Cassiopeia-2.0.0-foss-2023a.eb == 2024-03-25 18:26:23,620 filetools.py:1911 INFO Creating directory /tmp/vsc47063/eb-78i3uhl1/reprod_20240325182623_2817089/easyblocks (parents: True, set_gid: False, sticky: False) == 2024-03-25 18:26:23,643 filetools.py:2424 INFO /user/gent/470/vsc47063/easybuild/easybuild-easyblocks/easybuild/easyblocks/generic/bundle.py copied to /tmp/vsc47063/eb-78i3uhl1/reprod_20240325182623_2817089/easyblocks/bundle.py == 2024-03-25 18:26:23,643 easyblock.py:4468 INFO Dumped easyblock bundle.py required for reproduction to /tmp/vsc47063/eb-78i3uhl1/reprod_20240325182623_2817089/easyblocks == 2024-03-25 18:26:23,657 filetools.py:2424 INFO /user/gent/470/vsc47063/easybuild/easybuild-easyblocks/easybuild/easyblocks/generic/pythonbundle.py copied to /tmp/vsc47063/eb-78i3uhl1/reprod_20240325182623_2817089/easyblocks/pythonbundle.py == 2024-03-25 18:26:23,657 easyblock.py:4468 INFO Dumped easyblock pythonbundle.py required for reproduction to /tmp/vsc47063/eb-78i3uhl1/reprod_20240325182623_2817089/easyblocks == 2024-03-25 18:26:23,662 easyblock.py:2239 INFO Number of iterations to perform for central part of installation procedure: 1 == 2024-03-25 18:26:23,663 build_log.py:267 INFO building and installing Cassiopeia/2.0.0-foss-2023a... == 2024-03-25 18:26:23,664 filetools.py:2004 INFO Lock /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_cascadelake-ampere-ib_software_Cassiopeia_2.0.0-foss-2023a.lock does not exist == 2024-03-25 18:26:23,664 filetools.py:1945 INFO Creating lock at /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_cascadelake-ampere-ib_software_Cassiopeia_2.0.0-foss-2023a.lock... == 2024-03-25 18:26:23,664 filetools.py:1911 INFO Creating directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_cascadelake-ampere-ib_software_Cassiopeia_2.0.0-foss-2023a.lock (parents: True, set_gid: False, sticky: False) == 2024-03-25 18:26:23,672 filetools.py:1954 INFO Lock created: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_cascadelake-ampere-ib_software_Cassiopeia_2.0.0-foss-2023a.lock == 2024-03-25 18:26:23,672 build_log.py:267 INFO fetching files... == 2024-03-25 18:26:23,672 easyblock.py:3956 INFO Starting fetch step == 2024-03-25 18:26:23,672 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:26:23,672 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' == 2024-03-25 18:26:23,672 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) == 2024-03-25 18:26:23,672 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='cassiopeia', builddir='/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a', github_account='cassiopeia', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a', module_name='Cassiopeia/2.0.0-foss-2023a', mpi_cmd_prefix='mpirun -n 1', name='Cassiopeia', nameletter='C', nameletterlower='c', namelower='cassiopeia', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.3', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='2.0.0', version_major='2', version_major_minor='2.0', version_minor='0', versionprefix='', versionsuffix='' == 2024-03-25 18:26:23,673 easyblock.py:3964 INFO Running method fetch_step part of step fetch == 2024-03-25 18:26:23,673 easyblock.py:2361 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version == 2024-03-25 18:26:23,673 easyblock.py:2389 INFO no sources provided == 2024-03-25 18:26:23,673 easyblock.py:2404 INFO no patches provided == 2024-03-25 18:26:23,673 easyblock.py:810 INFO Considering directory in which easyconfig file is located when searching for hatch_nodejs_version-0.3.2.tar.gz: /kyukon/data/gent/470/vsc47063/vsc-software-stack/214_Single-cell_python_bundle == 2024-03-25 18:26:23,673 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/470/vsc47063/easybuild/easybuild-framework/eb == 2024-03-25 18:26:23,674 tools.py:289 INFO Not considering /user/gent/470/vsc47063/easybuild (no easybuild/easyconfigs subdir found) == 2024-03-25 18:26:23,674 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/470/vsc47063/easybuild (via resolved path to 'eb')... == 2024-03-25 18:26:23,705 easyblock.py:851 INFO Found file hatch_nodejs_version-0.3.2.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/hatch_nodejs_version-0.3.2.tar.gz == 2024-03-25 18:26:23,716 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/hatch_nodejs_version-0.3.2.tar.gz: 05f979219e2e46d3f6232f0872d9c21f == 2024-03-25 18:26:23,716 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/hatch_nodejs_version-0.3.2.tar.gz: 8a7828d817b71e50bbbbb01c9bfc0b329657b7900c56846489b9c958de15b54c == 2024-03-25 18:26:23,716 easyblock.py:685 INFO Checksum for extension source hatch_nodejs_version-0.3.2.tar.gz verified == 2024-03-25 18:26:23,716 easyblock.py:532 INFO Fetched extension patches: [] == 2024-03-25 18:26:23,717 easyblock.py:810 INFO Considering directory in which easyconfig file is located when searching for ngs-tools-1.8.5.tar.gz: /kyukon/data/gent/470/vsc47063/vsc-software-stack/214_Single-cell_python_bundle == 2024-03-25 18:26:23,717 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/470/vsc47063/easybuild/easybuild-framework/eb == 2024-03-25 18:26:23,717 tools.py:289 INFO Not considering /user/gent/470/vsc47063/easybuild (no easybuild/easyconfigs subdir found) == 2024-03-25 18:26:23,717 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/470/vsc47063/easybuild (via resolved path to 'eb')... == 2024-03-25 18:26:23,719 easyblock.py:851 INFO Found file ngs-tools-1.8.5.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/ngs-tools-1.8.5.tar.gz == 2024-03-25 18:26:23,865 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/ngs-tools-1.8.5.tar.gz: 85f4b489e469f7c715cfd394b63bc154 == 2024-03-25 18:26:23,985 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/ngs-tools-1.8.5.tar.gz: 380e236a101c5b1ac3c0fcdbcc908a210179b6ef2a93fbea9f4eb0ec2edc1de0 == 2024-03-25 18:26:24,101 easyblock.py:685 INFO Checksum for extension source ngs-tools-1.8.5.tar.gz verified == 2024-03-25 18:26:24,101 easyblock.py:532 INFO Fetched extension patches: [] == 2024-03-25 18:26:24,101 easyblock.py:810 INFO Considering directory in which easyconfig file is located when searching for nbformat-5.10.3.tar.gz: /kyukon/data/gent/470/vsc47063/vsc-software-stack/214_Single-cell_python_bundle == 2024-03-25 18:26:24,101 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/470/vsc47063/easybuild/easybuild-framework/eb == 2024-03-25 18:26:24,102 tools.py:289 INFO Not considering /user/gent/470/vsc47063/easybuild (no easybuild/easyconfigs subdir found) == 2024-03-25 18:26:24,102 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/470/vsc47063/easybuild (via resolved path to 'eb')... == 2024-03-25 18:26:24,104 easyblock.py:851 INFO Found file nbformat-5.10.3.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/nbformat-5.10.3.tar.gz == 2024-03-25 18:26:24,120 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/nbformat-5.10.3.tar.gz: 64e046c0420facd117981bbda4b1fba0 == 2024-03-25 18:26:24,121 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/nbformat-5.10.3.tar.gz: 60ed5e910ef7c6264b87d644f276b1b49e24011930deef54605188ddeb211685 == 2024-03-25 18:26:24,122 easyblock.py:685 INFO Checksum for extension source nbformat-5.10.3.tar.gz verified == 2024-03-25 18:26:24,122 easyblock.py:532 INFO Fetched extension patches: [] == 2024-03-25 18:26:24,122 easyblock.py:810 INFO Considering directory in which easyconfig file is located when searching for nbconvert-7.16.3.tar.gz: /kyukon/data/gent/470/vsc47063/vsc-software-stack/214_Single-cell_python_bundle == 2024-03-25 18:26:24,122 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/470/vsc47063/easybuild/easybuild-framework/eb == 2024-03-25 18:26:24,123 tools.py:289 INFO Not considering /user/gent/470/vsc47063/easybuild (no easybuild/easyconfigs subdir found) == 2024-03-25 18:26:24,123 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/470/vsc47063/easybuild (via resolved path to 'eb')... == 2024-03-25 18:26:24,123 easyblock.py:851 INFO Found file nbconvert-7.16.3.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/nbconvert-7.16.3.tar.gz == 2024-03-25 18:26:24,191 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/nbconvert-7.16.3.tar.gz: 3598dda22ab9fb316c55fdaa189ee2c7 == 2024-03-25 18:26:24,193 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/nbconvert-7.16.3.tar.gz: a6733b78ce3d47c3f85e504998495b07e6ea9cf9bf6ec1c98dda63ec6ad19142 == 2024-03-25 18:26:24,196 easyblock.py:685 INFO Checksum for extension source nbconvert-7.16.3.tar.gz verified == 2024-03-25 18:26:24,196 easyblock.py:532 INFO Fetched extension patches: [] == 2024-03-25 18:26:24,196 easyblock.py:810 INFO Considering directory in which easyconfig file is located when searching for itolapi-4.1.4.tar.gz: /kyukon/data/gent/470/vsc47063/vsc-software-stack/214_Single-cell_python_bundle == 2024-03-25 18:26:24,196 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/470/vsc47063/easybuild/easybuild-framework/eb == 2024-03-25 18:26:24,196 tools.py:289 INFO Not considering /user/gent/470/vsc47063/easybuild (no easybuild/easyconfigs subdir found) == 2024-03-25 18:26:24,196 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/470/vsc47063/easybuild (via resolved path to 'eb')... == 2024-03-25 18:26:24,197 easyblock.py:851 INFO Found file itolapi-4.1.4.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/itolapi-4.1.4.tar.gz == 2024-03-25 18:26:24,243 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/itolapi-4.1.4.tar.gz: 7e1dab1332987bd26614af3181484fed == 2024-03-25 18:26:24,243 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/itolapi-4.1.4.tar.gz: 68e87ba51d209da556b0e373b3b0456b644a1a732c193fedbd7785ff37b6a2cb == 2024-03-25 18:26:24,243 easyblock.py:685 INFO Checksum for extension source itolapi-4.1.4.tar.gz verified == 2024-03-25 18:26:24,243 easyblock.py:532 INFO Fetched extension patches: [] == 2024-03-25 18:26:24,244 easyblock.py:810 INFO Considering directory in which easyconfig file is located when searching for hits-0.4.0.tar.gz: /kyukon/data/gent/470/vsc47063/vsc-software-stack/214_Single-cell_python_bundle == 2024-03-25 18:26:24,244 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/470/vsc47063/easybuild/easybuild-framework/eb == 2024-03-25 18:26:24,244 tools.py:289 INFO Not considering /user/gent/470/vsc47063/easybuild (no easybuild/easyconfigs subdir found) == 2024-03-25 18:26:24,244 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/470/vsc47063/easybuild (via resolved path to 'eb')... == 2024-03-25 18:26:24,245 easyblock.py:851 INFO Found file hits-0.4.0.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/hits-0.4.0.tar.gz == 2024-03-25 18:26:24,277 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/hits-0.4.0.tar.gz: 26acc0a19504950c0d9370937c3314bf == 2024-03-25 18:26:24,280 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/hits-0.4.0.tar.gz: 743bfc1b56ab8fcf9fefacfcad4c1f23e9bafec1b42225709dbe097c8e669383 == 2024-03-25 18:26:24,283 easyblock.py:685 INFO Checksum for extension source hits-0.4.0.tar.gz verified == 2024-03-25 18:26:24,283 easyblock.py:532 INFO Fetched extension patches: [] == 2024-03-25 18:26:24,284 easyblock.py:810 INFO Considering directory in which easyconfig file is located when searching for Levenshtein-0.22.0.tar.gz: /kyukon/data/gent/470/vsc47063/vsc-software-stack/214_Single-cell_python_bundle == 2024-03-25 18:26:24,284 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/470/vsc47063/easybuild/easybuild-framework/eb == 2024-03-25 18:26:24,284 tools.py:289 INFO Not considering /user/gent/470/vsc47063/easybuild (no easybuild/easyconfigs subdir found) == 2024-03-25 18:26:24,284 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/470/vsc47063/easybuild (via resolved path to 'eb')... == 2024-03-25 18:26:24,285 easyblock.py:851 INFO Found file Levenshtein-0.22.0.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/Levenshtein-0.22.0.tar.gz == 2024-03-25 18:26:24,314 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/Levenshtein-0.22.0.tar.gz: dfd64307e603a1edfd71d8458d69fa1d == 2024-03-25 18:26:24,314 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/Levenshtein-0.22.0.tar.gz: 86d285d770551cb648d4fcfe5243449a479e694e56b65272dc6cbda879012051 == 2024-03-25 18:26:24,315 easyblock.py:685 INFO Checksum for extension source Levenshtein-0.22.0.tar.gz verified == 2024-03-25 18:26:24,315 easyblock.py:532 INFO Fetched extension patches: [] == 2024-03-25 18:26:24,315 easyblock.py:810 INFO Considering directory in which easyconfig file is located when searching for python-Levenshtein-0.22.0.tar.gz: /kyukon/data/gent/470/vsc47063/vsc-software-stack/214_Single-cell_python_bundle == 2024-03-25 18:26:24,315 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/470/vsc47063/easybuild/easybuild-framework/eb == 2024-03-25 18:26:24,315 tools.py:289 INFO Not considering /user/gent/470/vsc47063/easybuild (no easybuild/easyconfigs subdir found) == 2024-03-25 18:26:24,315 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/470/vsc47063/easybuild (via resolved path to 'eb')... == 2024-03-25 18:26:24,317 easyblock.py:851 INFO Found file python-Levenshtein-0.22.0.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/python-Levenshtein-0.22.0.tar.gz == 2024-03-25 18:26:24,336 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/python-Levenshtein-0.22.0.tar.gz: bf8ed22c86bcd473233d064b9c68bffe == 2024-03-25 18:26:24,336 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/python-Levenshtein-0.22.0.tar.gz: 6f8e2216fbd4610ccfa1bab2e0052fb23de34c2333c192de08150eeb99717702 == 2024-03-25 18:26:24,336 easyblock.py:685 INFO Checksum for extension source python-Levenshtein-0.22.0.tar.gz verified == 2024-03-25 18:26:24,336 easyblock.py:532 INFO Fetched extension patches: [] == 2024-03-25 18:26:24,337 easyblock.py:810 INFO Considering directory in which easyconfig file is located when searching for Cassiopeia-2.0.0.tar.gz: /kyukon/data/gent/470/vsc47063/vsc-software-stack/214_Single-cell_python_bundle == 2024-03-25 18:26:24,337 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/470/vsc47063/easybuild/easybuild-framework/eb == 2024-03-25 18:26:24,337 tools.py:289 INFO Not considering /user/gent/470/vsc47063/easybuild (no easybuild/easyconfigs subdir found) == 2024-03-25 18:26:24,337 tools.py:297 INFO Also considering installation prefix /kyukon/home/gent/470/vsc47063/easybuild (via resolved path to 'eb')... == 2024-03-25 18:26:24,338 easyblock.py:851 INFO Found file Cassiopeia-2.0.0.tar.gz at /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/Cassiopeia-2.0.0.tar.gz == 2024-03-25 18:26:24,377 easyblock.py:679 INFO md5 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/Cassiopeia-2.0.0.tar.gz: 77a1aeb55dcb7460a939c0a5a37834f5 == 2024-03-25 18:26:24,384 easyblock.py:679 INFO sha256 checksum for /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/Cassiopeia-2.0.0.tar.gz: 28ae7495152683f5733222255056a1e7b2f7a51e1cee2f23f0d9f8ae5f4c3742 == 2024-03-25 18:26:24,391 easyblock.py:685 INFO Checksum for extension source Cassiopeia-2.0.0.tar.gz verified == 2024-03-25 18:26:24,391 easyblock.py:532 INFO Fetched extension patches: [] == 2024-03-25 18:26:24,391 easyblock.py:2449 INFO Checking dirs that need to be created: ['/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a', '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/Cassiopeia', '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/bio/Cassiopeia'] == 2024-03-25 18:26:24,394 build_log.py:267 INFO ... (took < 1 sec) == 2024-03-25 18:26:24,394 build_log.py:267 INFO creating build dir, resetting environment... == 2024-03-25 18:26:24,395 easyblock.py:3956 INFO Starting ready step == 2024-03-25 18:26:24,395 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:26:24,395 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' == 2024-03-25 18:26:24,395 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) == 2024-03-25 18:26:24,395 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='cassiopeia', builddir='/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a', github_account='cassiopeia', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a', module_name='Cassiopeia/2.0.0-foss-2023a', mpi_cmd_prefix='mpirun -n 1', name='Cassiopeia', nameletter='C', nameletterlower='c', namelower='cassiopeia', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.3', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='2.0.0', version_major='2', version_major_minor='2.0', version_minor='0', versionprefix='', versionsuffix='' == 2024-03-25 18:26:24,395 easyblock.py:3964 INFO Running method check_readiness_step part of step ready == 2024-03-25 18:26:24,400 run.py:247 INFO running cmd: ulimit -u == 2024-03-25 18:26:24,403 easyblock.py:2258 INFO Setting parallelism: 8 == 2024-03-25 18:26:24,445 easyblock.py:2310 WARNING Loaded modules detected: ['env/vsc/donphan', 'env/slurm/donphan', 'env/software/donphan', 'cluster/donphan'] == 2024-03-25 18:26:24,446 easyblock.py:3964 INFO Running method make_builddir part of step ready == 2024-03-25 18:26:24,446 easyblock.py:1138 INFO Found old directory /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a == 2024-03-25 18:26:24,488 filetools.py:383 INFO Path /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a successfully removed. == 2024-03-25 18:26:24,488 easyblock.py:1146 INFO Removed old directory /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a == 2024-03-25 18:26:24,488 filetools.py:1911 INFO Creating directory /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a (parents: True, set_gid: False, sticky: False) == 2024-03-25 18:26:24,488 easyblock.py:3964 INFO Running method reset_env part of step ready == 2024-03-25 18:26:24,489 easyblock.py:3964 INFO Running method handle_iterate_opts part of step ready == 2024-03-25 18:26:24,489 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:26:24,489 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' == 2024-03-25 18:26:24,489 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) == 2024-03-25 18:26:24,489 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='cassiopeia', builddir='/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a', github_account='cassiopeia', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a', module_name='Cassiopeia/2.0.0-foss-2023a', mpi_cmd_prefix='mpirun -n 1', name='Cassiopeia', nameletter='C', nameletterlower='c', namelower='cassiopeia', parallel='8', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.3', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='2.0.0', version_major='2', version_major_minor='2.0', version_minor='0', versionprefix='', versionsuffix='' == 2024-03-25 18:26:24,490 build_log.py:267 INFO ... (took < 1 sec) == 2024-03-25 18:26:24,490 build_log.py:267 INFO unpacking... == 2024-03-25 18:26:24,490 easyblock.py:3956 INFO Starting source step == 2024-03-25 18:26:24,490 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:26:24,490 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' == 2024-03-25 18:26:24,490 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) == 2024-03-25 18:26:24,490 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='cassiopeia', builddir='/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a', github_account='cassiopeia', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a', module_name='Cassiopeia/2.0.0-foss-2023a', mpi_cmd_prefix='mpirun -n 1', name='Cassiopeia', nameletter='C', nameletterlower='c', namelower='cassiopeia', parallel='8', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.3', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='2.0.0', version_major='2', version_major_minor='2.0', version_minor='0', versionprefix='', versionsuffix='' == 2024-03-25 18:26:24,490 easyblock.py:3964 INFO Running method checksum_step part of step source == 2024-03-25 18:26:24,490 easyblock.py:3964 INFO Running method extract_step part of step source == 2024-03-25 18:26:24,490 build_log.py:267 INFO ... (took < 1 sec) == 2024-03-25 18:26:24,490 build_log.py:267 INFO patching... == 2024-03-25 18:26:24,491 easyblock.py:3956 INFO Starting patch step == 2024-03-25 18:26:24,491 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:26:24,491 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' == 2024-03-25 18:26:24,491 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) == 2024-03-25 18:26:24,491 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='cassiopeia', builddir='/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a', github_account='cassiopeia', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a', module_name='Cassiopeia/2.0.0-foss-2023a', mpi_cmd_prefix='mpirun -n 1', name='Cassiopeia', nameletter='C', nameletterlower='c', namelower='cassiopeia', parallel='8', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.3', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='2.0.0', version_major='2', version_major_minor='2.0', version_minor='0', versionprefix='', versionsuffix='' == 2024-03-25 18:26:24,491 easyblock.py:3964 INFO Running method patch_step part of step patch == 2024-03-25 18:26:24,491 build_log.py:267 INFO ... (took < 1 sec) == 2024-03-25 18:26:24,491 build_log.py:267 INFO preparing... == 2024-03-25 18:26:24,491 easyblock.py:3956 INFO Starting prepare step == 2024-03-25 18:26:24,491 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:26:24,491 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' == 2024-03-25 18:26:24,492 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) == 2024-03-25 18:26:24,492 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='cassiopeia', builddir='/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a', github_account='cassiopeia', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a', module_name='Cassiopeia/2.0.0-foss-2023a', mpi_cmd_prefix='mpirun -n 1', name='Cassiopeia', nameletter='C', nameletterlower='c', namelower='cassiopeia', parallel='8', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.3', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='2.0.0', version_major='2', version_major_minor='2.0', version_minor='0', versionprefix='', versionsuffix='' == 2024-03-25 18:26:24,492 easyblock.py:3964 INFO Running method prepare_step part of step prepare == 2024-03-25 18:26:24,493 modules.py:626 INFO Checking whether CMake/3.26.3-GCCcore-12.3.0 exists... == 2024-03-25 18:26:24,493 modules.py:631 INFO Module CMake/3.26.3-GCCcore-12.3.0 exists (found in list of available modules) == 2024-03-25 18:26:24,493 modules.py:654 INFO Result for existence check of CMake/3.26.3-GCCcore-12.3.0 module: True == 2024-03-25 18:26:24,494 modules.py:626 INFO Checking whether Python/3.11.3-GCCcore-12.3.0 exists... == 2024-03-25 18:26:24,494 modules.py:631 INFO Module Python/3.11.3-GCCcore-12.3.0 exists (found in list of available modules) == 2024-03-25 18:26:24,494 modules.py:654 INFO Result for existence check of Python/3.11.3-GCCcore-12.3.0 module: True == 2024-03-25 18:26:24,494 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-GCCcore-12.3.0 exists... == 2024-03-25 18:26:24,494 modules.py:631 INFO Module Python-bundle-PyPI/2023.06-GCCcore-12.3.0 exists (found in list of available modules) == 2024-03-25 18:26:24,494 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-GCCcore-12.3.0 module: True == 2024-03-25 18:26:24,494 modules.py:626 INFO Checking whether Biopython/1.83-foss-2023a exists... == 2024-03-25 18:26:24,494 modules.py:631 INFO Module Biopython/1.83-foss-2023a exists (found in list of available modules) == 2024-03-25 18:26:24,494 modules.py:654 INFO Result for existence check of Biopython/1.83-foss-2023a module: True == 2024-03-25 18:26:24,494 modules.py:626 INFO Checking whether scikit-build/0.17.6-GCCcore-12.3.0 exists... == 2024-03-25 18:26:24,494 modules.py:631 INFO Module scikit-build/0.17.6-GCCcore-12.3.0 exists (found in list of available modules) == 2024-03-25 18:26:24,494 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-GCCcore-12.3.0 module: True == 2024-03-25 18:26:24,494 modules.py:626 INFO Checking whether bokeh/3.2.2-foss-2023a exists... == 2024-03-25 18:26:24,494 modules.py:631 INFO Module bokeh/3.2.2-foss-2023a exists (found in list of available modules) == 2024-03-25 18:26:24,494 modules.py:654 INFO Result for existence check of bokeh/3.2.2-foss-2023a module: True == 2024-03-25 18:26:24,495 modules.py:626 INFO Checking whether matplotlib/3.7.2-gfbf-2023a exists... == 2024-03-25 18:26:24,495 modules.py:631 INFO Module matplotlib/3.7.2-gfbf-2023a exists (found in list of available modules) == 2024-03-25 18:26:24,495 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-gfbf-2023a module: True == 2024-03-25 18:26:24,495 modules.py:626 INFO Checking whether networkx/3.1-gfbf-2023a exists... == 2024-03-25 18:26:24,495 modules.py:631 INFO Module networkx/3.1-gfbf-2023a exists (found in list of available modules) == 2024-03-25 18:26:24,495 modules.py:654 INFO Result for existence check of networkx/3.1-gfbf-2023a module: True == 2024-03-25 18:26:24,495 modules.py:626 INFO Checking whether numba/0.58.1-foss-2023a exists... == 2024-03-25 18:26:24,495 modules.py:631 INFO Module numba/0.58.1-foss-2023a exists (found in list of available modules) == 2024-03-25 18:26:24,495 modules.py:654 INFO Result for existence check of numba/0.58.1-foss-2023a module: True == 2024-03-25 18:26:24,495 modules.py:626 INFO Checking whether Pysam/0.22.0-GCC-12.3.0 exists... == 2024-03-25 18:26:24,495 modules.py:631 INFO Module Pysam/0.22.0-GCC-12.3.0 exists (found in list of available modules) == 2024-03-25 18:26:24,495 modules.py:654 INFO Result for existence check of Pysam/0.22.0-GCC-12.3.0 module: True == 2024-03-25 18:26:24,495 modules.py:626 INFO Checking whether PyYAML/6.0-GCCcore-12.3.0 exists... == 2024-03-25 18:26:24,495 modules.py:631 INFO Module PyYAML/6.0-GCCcore-12.3.0 exists (found in list of available modules) == 2024-03-25 18:26:24,496 modules.py:654 INFO Result for existence check of PyYAML/6.0-GCCcore-12.3.0 module: True == 2024-03-25 18:26:24,496 modules.py:626 INFO Checking whether typing-extensions/4.9.0-GCCcore-12.3.0 exists... == 2024-03-25 18:26:24,496 modules.py:631 INFO Module typing-extensions/4.9.0-GCCcore-12.3.0 exists (found in list of available modules) == 2024-03-25 18:26:24,496 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-GCCcore-12.3.0 module: True == 2024-03-25 18:26:24,496 modules.py:626 INFO Checking whether tqdm/4.66.1-GCCcore-12.3.0 exists... == 2024-03-25 18:26:24,496 modules.py:631 INFO Module tqdm/4.66.1-GCCcore-12.3.0 exists (found in list of available modules) == 2024-03-25 18:26:24,496 modules.py:654 INFO Result for existence check of tqdm/4.66.1-GCCcore-12.3.0 module: True == 2024-03-25 18:26:24,496 modules.py:626 INFO Checking whether hatchling/1.18.0-GCCcore-12.3.0 exists... == 2024-03-25 18:26:24,496 modules.py:631 INFO Module hatchling/1.18.0-GCCcore-12.3.0 exists (found in list of available modules) == 2024-03-25 18:26:24,496 modules.py:654 INFO Result for existence check of hatchling/1.18.0-GCCcore-12.3.0 module: True == 2024-03-25 18:26:24,496 modules.py:626 INFO Checking whether foss/2023a exists... == 2024-03-25 18:26:24,496 modules.py:634 INFO Module foss/2023a not found in list of available modules, checking via 'module show'... == 2024-03-25 18:26:29,592 modules.py:654 INFO Result for existence check of foss/2023a module: True == 2024-03-25 18:26:39,991 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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(previous value: '/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/lib') == 2024-03-25 18:26:45,425 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libffi/3.4.4-GCCcore-12.3.0/lib64:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libreadline/8.2-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/FFTW.MPI/3.3.10-gompi-2023a/lib:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/OpenBLAS/0.3.23-GCC-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libpciaccess/0.17-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/zlib/1.2.13-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libffi/3.4.4-GCCcore-12.3.0/lib64:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libreadline/8.2-GCCcore-12.3.0/lib') == 2024-03-25 18:26:55,921 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages/numpy/core/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libffi/3.4.4-GCCcore-12.3.0/lib64:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libreadline/8.2-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/FFTW.MPI/3.3.10-gompi-2023a/lib:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/OpenBLAS/0.3.23-GCC-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libpciaccess/0.17-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/zlib/1.2.13-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 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(previous value: '/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libyaml/0.2.5-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/lib') == 2024-03-25 18:27:57,289 modules.py:626 INFO Checking whether foss/2023a exists... == 2024-03-25 18:27:57,289 modules.py:634 INFO Module foss/2023a not found in list of available modules, checking via 'module show'... == 2024-03-25 18:27:57,289 modules.py:654 INFO Result for existence check of foss/2023a module: True == 2024-03-25 18:27:57,293 toolchain.py:766 INFO List of toolchain dependency modules and toolchain definition match! == 2024-03-25 18:27:57,295 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64/Intel. == 2024-03-25 18:27:57,315 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/include was not found == 2024-03-25 18:27:57,321 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/include was not found == 2024-03-25 18:27:57,321 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/lib64 was not found == 2024-03-25 18:27:57,322 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/lib was not found == 2024-03-25 18:27:57,323 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/include was not found == 2024-03-25 18:27:57,325 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/include was not found == 2024-03-25 18:27:57,326 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/include was not found == 2024-03-25 18:27:57,327 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/include was not found == 2024-03-25 18:27:57,328 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/include was not found == 2024-03-25 18:27:57,330 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/include was not found == 2024-03-25 18:27:57,331 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/include was not found == 2024-03-25 18:27:57,333 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/include was not found == 2024-03-25 18:27:57,335 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/include was not found == 2024-03-25 18:27:57,337 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/include was not found == 2024-03-25 18:27:57,338 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/include was not found == 2024-03-25 18:27:57,340 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/include was not found == 2024-03-25 18:27:57,343 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) == 2024-03-25 18:27:57,343 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) == 2024-03-25 18:27:57,343 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) == 2024-03-25 18:27:57,344 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) == 2024-03-25 18:27:57,344 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previously undefined) == 2024-03-25 18:27:57,344 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previously undefined) == 2024-03-25 18:27:57,344 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) == 2024-03-25 18:27:57,344 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) == 2024-03-25 18:27:57,344 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) == 2024-03-25 18:27:57,344 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) == 2024-03-25 18:27:57,344 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) == 2024-03-25 18:27:57,344 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) == 2024-03-25 18:27:57,344 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) == 2024-03-25 18:27:57,344 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) == 2024-03-25 18:27:57,344 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previously undefined) == 2024-03-25 18:27:57,344 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previously undefined) == 2024-03-25 18:27:57,344 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) == 2024-03-25 18:27:57,345 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) == 2024-03-25 18:27:57,345 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) == 2024-03-25 18:27:57,345 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) == 2024-03-25 18:27:57,345 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) == 2024-03-25 18:27:57,345 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) == 2024-03-25 18:27:57,345 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) == 2024-03-25 18:27:57,345 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) == 2024-03-25 18:27:57,345 environment.py:93 INFO Environment variable CC set to gcc (previously undefined) == 2024-03-25 18:27:57,345 environment.py:93 INFO Environment variable EBVARCC set to gcc (previously undefined) == 2024-03-25 18:27:57,345 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) == 2024-03-25 18:27:57,345 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) == 2024-03-25 18:27:57,345 environment.py:93 INFO Environment variable CPPFLAGS set to -I/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) == 2024-03-25 18:27:57,345 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) == 2024-03-25 18:27:57,345 environment.py:93 INFO Environment variable CXX set to g++ (previously undefined) == 2024-03-25 18:27:57,345 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previously undefined) == 2024-03-25 18:27:57,346 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) == 2024-03-25 18:27:57,346 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) == 2024-03-25 18:27:57,346 environment.py:93 INFO Environment variable F77 set to gfortran (previously undefined) == 2024-03-25 18:27:57,346 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previously undefined) == 2024-03-25 18:27:57,346 environment.py:93 INFO Environment variable F90 set to gfortran (previously undefined) == 2024-03-25 18:27:57,346 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previously undefined) == 2024-03-25 18:27:57,346 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) == 2024-03-25 18:27:57,346 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) == 2024-03-25 18:27:57,346 environment.py:93 INFO Environment variable FC set to gfortran (previously undefined) == 2024-03-25 18:27:57,346 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previously undefined) == 2024-03-25 18:27:57,346 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) == 2024-03-25 18:27:57,346 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) == 2024-03-25 18:27:57,346 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) == 2024-03-25 18:27:57,346 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) == 2024-03-25 18:27:57,346 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previously undefined) == 2024-03-25 18:27:57,347 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previously undefined) == 2024-03-25 18:27:57,347 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previously undefined) == 2024-03-25 18:27:57,347 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previously undefined) == 2024-03-25 18:27:57,347 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previously undefined) == 2024-03-25 18:27:57,347 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previously undefined) == 2024-03-25 18:27:57,347 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) == 2024-03-25 18:27:57,347 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) == 2024-03-25 18:27:57,347 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined) == 2024-03-25 18:27:57,347 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined) == 2024-03-25 18:27:57,347 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) == 2024-03-25 18:27:57,347 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) == 2024-03-25 18:27:57,347 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previously undefined) == 2024-03-25 18:27:57,347 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previously undefined) == 2024-03-25 18:27:57,347 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previously undefined) == 2024-03-25 18:27:57,347 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previously undefined) == 2024-03-25 18:27:57,347 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previously undefined) == 2024-03-25 18:27:57,348 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previously undefined) == 2024-03-25 18:27:57,348 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) == 2024-03-25 18:27:57,348 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) == 2024-03-25 18:27:57,348 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined) == 2024-03-25 18:27:57,348 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined) == 2024-03-25 18:27:57,348 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) == 2024-03-25 18:27:57,348 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) == 2024-03-25 18:27:57,348 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previously undefined) == 2024-03-25 18:27:57,348 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) == 2024-03-25 18:27:57,348 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) == 2024-03-25 18:27:57,348 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) == 2024-03-25 18:27:57,348 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previously undefined) == 2024-03-25 18:27:57,348 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previously undefined) == 2024-03-25 18:27:57,348 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) == 2024-03-25 18:27:57,348 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) == 2024-03-25 18:27:57,349 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) == 2024-03-25 18:27:57,349 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) == 2024-03-25 18:27:57,349 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) == 2024-03-25 18:27:57,349 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) == 2024-03-25 18:27:57,349 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) == 2024-03-25 18:27:57,349 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) == 2024-03-25 18:27:57,349 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib -L/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib -L/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib -L/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib (previously undefined) == 2024-03-25 18:27:57,349 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib -L/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib -L/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib -L/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib (previously undefined) == 2024-03-25 18:27:57,349 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previously undefined) == 2024-03-25 18:27:57,349 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previously undefined) == 2024-03-25 18:27:57,349 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previously undefined) == 2024-03-25 18:27:57,349 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previously undefined) == 2024-03-25 18:27:57,349 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined) == 2024-03-25 18:27:57,349 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined) == 2024-03-25 18:27:57,350 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined) == 2024-03-25 18:27:57,350 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined) == 2024-03-25 18:27:57,350 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previously undefined) == 2024-03-25 18:27:57,350 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previously undefined) == 2024-03-25 18:27:57,350 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previously undefined) == 2024-03-25 18:27:57,350 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previously undefined) == 2024-03-25 18:27:57,350 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previously undefined) == 2024-03-25 18:27:57,350 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previously undefined) == 2024-03-25 18:27:57,350 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) == 2024-03-25 18:27:57,350 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) == 2024-03-25 18:27:57,350 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) == 2024-03-25 18:27:57,350 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) == 2024-03-25 18:27:57,350 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) == 2024-03-25 18:27:57,350 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) == 2024-03-25 18:27:57,350 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previously undefined) == 2024-03-25 18:27:57,351 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previously undefined) == 2024-03-25 18:27:57,351 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) == 2024-03-25 18:27:57,351 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) == 2024-03-25 18:27:57,351 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) == 2024-03-25 18:27:57,351 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) == 2024-03-25 18:27:57,351 environment.py:93 INFO Environment variable MPICC set to mpicc (previously undefined) == 2024-03-25 18:27:57,351 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previously undefined) == 2024-03-25 18:27:57,351 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previously undefined) == 2024-03-25 18:27:57,351 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined) == 2024-03-25 18:27:57,351 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previously undefined) == 2024-03-25 18:27:57,351 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined) == 2024-03-25 18:27:57,351 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previously undefined) == 2024-03-25 18:27:57,351 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined) == 2024-03-25 18:27:57,351 environment.py:93 INFO Environment variable MPIFC set to mpifort (previously undefined) == 2024-03-25 18:27:57,351 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined) == 2024-03-25 18:27:57,352 environment.py:93 INFO Environment variable MPI_INC_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include (previously undefined) == 2024-03-25 18:27:57,352 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include (previously undefined) == 2024-03-25 18:27:57,352 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64 (previously undefined) == 2024-03-25 18:27:57,352 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64 (previously undefined) == 2024-03-25 18:27:57,352 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so (previously undefined) == 2024-03-25 18:27:57,352 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so (previously undefined) == 2024-03-25 18:27:57,352 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previously undefined) == 2024-03-25 18:27:57,352 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined) == 2024-03-25 18:27:57,352 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previously undefined) == 2024-03-25 18:27:57,352 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined) == 2024-03-25 18:27:57,352 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previously undefined) == 2024-03-25 18:27:57,352 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined) == 2024-03-25 18:27:57,352 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previously undefined) == 2024-03-25 18:27:57,352 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined) == 2024-03-25 18:27:57,352 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previously undefined) == 2024-03-25 18:27:57,352 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined) == 2024-03-25 18:27:57,353 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previously undefined) == 2024-03-25 18:27:57,353 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined) == 2024-03-25 18:27:57,353 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) == 2024-03-25 18:27:57,353 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) == 2024-03-25 18:27:57,353 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) == 2024-03-25 18:27:57,353 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) == 2024-03-25 18:27:57,353 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previously undefined) == 2024-03-25 18:27:57,353 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previously undefined) == 2024-03-25 18:27:57,353 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib (previously undefined) == 2024-03-25 18:27:57,353 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib (previously undefined) == 2024-03-25 18:27:57,353 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) == 2024-03-25 18:27:57,353 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) == 2024-03-25 18:27:57,353 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) == 2024-03-25 18:27:57,353 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) == 2024-03-25 18:27:57,353 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) == 2024-03-25 18:27:57,354 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) == 2024-03-25 18:27:57,354 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) == 2024-03-25 18:27:57,354 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) == 2024-03-25 18:27:57,354 easyblock.py:2142 INFO Using /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/ as start dir == 2024-03-25 18:27:57,355 filetools.py:526 INFO Command python found at /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python == 2024-03-25 18:27:57,355 run.py:247 INFO running cmd: python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:27:58,007 run.py:247 INFO running cmd: python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' == 2024-03-25 18:28:00,702 run.py:247 INFO running cmd: python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:28:00,765 run.py:247 INFO running cmd: python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' == 2024-03-25 18:28:00,962 build_log.py:267 INFO ... (took 1 min 36 secs) == 2024-03-25 18:28:00,963 build_log.py:267 INFO configuring... == 2024-03-25 18:28:00,963 easyblock.py:3956 INFO Starting configure step == 2024-03-25 18:28:00,963 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:28:00,963 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' == 2024-03-25 18:28:00,963 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) == 2024-03-25 18:28:00,963 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='cassiopeia', builddir='/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a', github_account='cassiopeia', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a', module_name='Cassiopeia/2.0.0-foss-2023a', mpi_cmd_prefix='mpirun -n 1', name='Cassiopeia', nameletter='C', nameletterlower='c', namelower='cassiopeia', parallel='8', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.3', start_dir='/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='2.0.0', version_major='2', version_major_minor='2.0', version_minor='0', versionprefix='', versionsuffix='' == 2024-03-25 18:28:00,964 easyblock.py:3964 INFO Running method configure_step part of step configure == 2024-03-25 18:28:00,964 build_log.py:267 INFO ... (took < 1 sec) == 2024-03-25 18:28:00,964 build_log.py:267 INFO building... == 2024-03-25 18:28:00,964 easyblock.py:3956 INFO Starting build step == 2024-03-25 18:28:00,964 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:28:00,964 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' == 2024-03-25 18:28:00,964 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) == 2024-03-25 18:28:00,964 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='cassiopeia', builddir='/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a', github_account='cassiopeia', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a', module_name='Cassiopeia/2.0.0-foss-2023a', mpi_cmd_prefix='mpirun -n 1', name='Cassiopeia', nameletter='C', nameletterlower='c', namelower='cassiopeia', parallel='8', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.3', start_dir='/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='2.0.0', version_major='2', version_major_minor='2.0', version_minor='0', versionprefix='', versionsuffix='' == 2024-03-25 18:28:00,964 easyblock.py:3964 INFO Running method build_step part of step build == 2024-03-25 18:28:00,964 build_log.py:267 INFO ... (took < 1 sec) == 2024-03-25 18:28:00,964 build_log.py:267 INFO testing... == 2024-03-25 18:28:00,965 easyblock.py:3956 INFO Starting test step == 2024-03-25 18:28:00,965 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:28:00,965 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' == 2024-03-25 18:28:00,965 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) == 2024-03-25 18:28:00,965 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='cassiopeia', builddir='/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a', github_account='cassiopeia', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a', module_name='Cassiopeia/2.0.0-foss-2023a', mpi_cmd_prefix='mpirun -n 1', name='Cassiopeia', nameletter='C', nameletterlower='c', namelower='cassiopeia', parallel='8', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.3', start_dir='/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='2.0.0', version_major='2', version_major_minor='2.0', version_minor='0', versionprefix='', versionsuffix='' == 2024-03-25 18:28:00,965 easyblock.py:3964 INFO Running method test_step part of step test == 2024-03-25 18:28:00,965 build_log.py:267 INFO ... (took < 1 sec) == 2024-03-25 18:28:00,965 build_log.py:267 INFO installing... == 2024-03-25 18:28:00,965 easyblock.py:3956 INFO Starting install step == 2024-03-25 18:28:00,965 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:28:00,965 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' == 2024-03-25 18:28:00,966 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) == 2024-03-25 18:28:00,966 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='cassiopeia', builddir='/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a', github_account='cassiopeia', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a', module_name='Cassiopeia/2.0.0-foss-2023a', mpi_cmd_prefix='mpirun -n 1', name='Cassiopeia', nameletter='C', nameletterlower='c', namelower='cassiopeia', parallel='8', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.3', start_dir='/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='2.0.0', version_major='2', version_major_minor='2.0', version_minor='0', versionprefix='', versionsuffix='' == 2024-03-25 18:28:00,966 easyblock.py:3964 INFO Running method stage_install_step part of step install == 2024-03-25 18:28:00,966 easyblock.py:3964 INFO Running method make_installdir part of step install == 2024-03-25 18:28:00,969 easyblock.py:1138 INFO Found old directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a == 2024-03-25 18:28:01,362 filetools.py:383 INFO Path /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a successfully removed. == 2024-03-25 18:28:01,362 easyblock.py:1146 INFO Removed old directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a == 2024-03-25 18:28:01,362 filetools.py:1911 INFO Creating directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a (parents: True, set_gid: False, sticky: False) == 2024-03-25 18:28:01,362 easyblock.py:3964 INFO Running method install_step part of step install == 2024-03-25 18:28:01,362 build_log.py:267 INFO ... (took < 1 sec) == 2024-03-25 18:28:01,362 build_log.py:267 INFO taking care of extensions... == 2024-03-25 18:28:01,362 easyblock.py:3956 INFO Starting extensions step == 2024-03-25 18:28:01,363 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:28:01,363 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' == 2024-03-25 18:28:01,363 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) == 2024-03-25 18:28:01,363 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='cassiopeia', builddir='/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a', github_account='cassiopeia', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a', module_name='Cassiopeia/2.0.0-foss-2023a', mpi_cmd_prefix='mpirun -n 1', name='Cassiopeia', nameletter='C', nameletterlower='c', namelower='cassiopeia', parallel='8', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.3', start_dir='/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='2.0.0', version_major='2', version_major_minor='2.0', version_minor='0', versionprefix='', versionsuffix='' == 2024-03-25 18:28:01,363 easyblock.py:3964 INFO Running method extensions_step part of step extensions == 2024-03-25 18:28:01,363 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previously undefined) == 2024-03-25 18:28:01,363 easyblock.py:1702 INFO Loading fake module (Cassiopeia/2.0.0-foss-2023a) == 2024-03-25 18:28:01,773 easyblock.py:1619 INFO Only retaining paths for CMAKE_PREFIX_PATH that contain at least one file: [''] -> [] == 2024-03-25 18:28:01,774 filetools.py:1911 INFO Creating directory /tmp/vsc47063/eb-78i3uhl1/tmpf9srndro/all/Cassiopeia (parents: True, set_gid: False, sticky: False) == 2024-03-25 18:28:01,775 easyblock.py:3772 INFO Module file /tmp/vsc47063/eb-78i3uhl1/tmpf9srndro/all/Cassiopeia/2.0.0-foss-2023a.lua written: help([==[ Description =========== A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction. More information ================ - Homepage: https://github.com/YosefLab/Cassiopeia Included extensions =================== Cassiopeia-2.0.0, hatch_nodejs_version-0.3.2, hits-0.4.0, itolapi-4.1.4, Levenshtein-0.22.0, nbconvert-7.16.3, nbformat-5.10.3, ngs-tools-1.8.5, python-Levenshtein-0.22.0 ]==]) whatis([==[Description: A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction.]==]) whatis([==[Homepage: https://github.com/YosefLab/Cassiopeia]==]) whatis([==[URL: https://github.com/YosefLab/Cassiopeia]==]) whatis([==[Extensions: Cassiopeia-2.0.0, hatch_nodejs_version-0.3.2, hits-0.4.0, itolapi-4.1.4, Levenshtein-0.22.0, nbconvert-7.16.3, nbformat-5.10.3, ngs-tools-1.8.5, python-Levenshtein-0.22.0]==]) local root = "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a" conflict("Cassiopeia") if not ( isloaded("foss/2023a") ) then load("foss/2023a") end if not ( isloaded("Python/3.11.3-GCCcore-12.3.0") ) then load("Python/3.11.3-GCCcore-12.3.0") end if not ( isloaded("Python-bundle-PyPI/2023.06-GCCcore-12.3.0") ) then load("Python-bundle-PyPI/2023.06-GCCcore-12.3.0") end if not ( isloaded("Biopython/1.83-foss-2023a") ) then load("Biopython/1.83-foss-2023a") end if not ( isloaded("scikit-build/0.17.6-GCCcore-12.3.0") ) then load("scikit-build/0.17.6-GCCcore-12.3.0") end if not ( isloaded("bokeh/3.2.2-foss-2023a") ) then load("bokeh/3.2.2-foss-2023a") end if not ( isloaded("matplotlib/3.7.2-gfbf-2023a") ) then load("matplotlib/3.7.2-gfbf-2023a") end if not ( isloaded("networkx/3.1-gfbf-2023a") ) then load("networkx/3.1-gfbf-2023a") end if not ( isloaded("numba/0.58.1-foss-2023a") ) then load("numba/0.58.1-foss-2023a") end if not ( isloaded("Pysam/0.22.0-GCC-12.3.0") ) then load("Pysam/0.22.0-GCC-12.3.0") end if not ( isloaded("PyYAML/6.0-GCCcore-12.3.0") ) then load("PyYAML/6.0-GCCcore-12.3.0") end if not ( isloaded("typing-extensions/4.9.0-GCCcore-12.3.0") ) then load("typing-extensions/4.9.0-GCCcore-12.3.0") end if not ( isloaded("tqdm/4.66.1-GCCcore-12.3.0") ) then load("tqdm/4.66.1-GCCcore-12.3.0") end if not ( isloaded("hatchling/1.18.0-GCCcore-12.3.0") ) then load("hatchling/1.18.0-GCCcore-12.3.0") end setenv("EBROOTCASSIOPEIA", root) setenv("EBVERSIONCASSIOPEIA", "2.0.0") setenv("EBDEVELCASSIOPEIA", pathJoin(root, "easybuild/Cassiopeia-2.0.0-foss-2023a-easybuild-devel")) prepend_path("PYTHONPATH", pathJoin(root, "lib/python3.11/site-packages")) -- Built with EasyBuild version 4.9.1.dev0-r92d29680fb5d14086943c96a9efcd2558093f6ae setenv("EBEXTSLISTCASSIOPEIA", "hatch_nodejs_version-0.3.2,ngs-tools-1.8.5,nbformat-5.10.3,nbconvert-7.16.3,itolapi-4.1.4,hits-0.4.0,Levenshtein-0.22.0,python-Levenshtein-0.22.0,Cassiopeia-2.0.0") == 2024-03-25 18:28:01,775 filetools.py:1911 INFO Creating directory /tmp/vsc47063/eb-78i3uhl1/tmpf9srndro/bio/Cassiopeia (parents: True, set_gid: False, sticky: False) == 2024-03-25 18:28:01,776 easyblock.py:3803 INFO Skipping devel module... == 2024-03-25 18:28:01,776 filetools.py:338 INFO Symlinked 2.0.0-foss-2023a.lua to /tmp/vsc47063/eb-78i3uhl1/tmpf9srndro/all/Cassiopeia/default == 2024-03-25 18:28:01,776 module_generator.py:1502 INFO Module default version file written to point to /tmp/vsc47063/eb-78i3uhl1/tmpf9srndro/all/Cassiopeia/default == 2024-03-25 18:28:08,172 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_PATH set to /usr/libexec/jobcli:1;/user/gent/470/vsc47063/easybuild/easybuild-framework:1;/opt/VirtualGL/bin:1;/usr/local/bin:1;/usr/bin:1;/usr/local/sbin:1;/usr/sbin:1;/user/gent/470/vsc47063/.dotnet/tools:1 (previous value: 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== 2024-03-25 18:28:08,172 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_MODULEPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all:2;/apps/gent/RHEL8/cascadelake-ampere-ib/modules/all:1;/apps/gent/RHEL8/cascadelake-ib/modules/all:1;/etc/modulefiles/vsc:1 (previous value: '/tmp/vsc47063/eb-78i3uhl1/tmpf9srndro/all:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all:2;/apps/gent/RHEL8/cascadelake-ampere-ib/modules/all:1;/apps/gent/RHEL8/cascadelake-ib/modules/all:1;/etc/modulefiles/vsc:1') == 2024-03-25 18:28:08,173 environment.py:93 INFO Environment variable _ModuleTable001_ set to 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== 2024-03-25 18:28:08,173 environment.py:93 INFO Environment variable _ModuleTable003_ set to 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 (previous value: 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== 2024-03-25 18:28:08,173 environment.py:93 INFO Environment variable MODULEPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all:/apps/gent/RHEL8/cascadelake-ampere-ib/modules/all:/apps/gent/RHEL8/cascadelake-ib/modules/all:/etc/modulefiles/vsc (previous value: '/tmp/vsc47063/eb-78i3uhl1/tmpf9srndro/all:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all:/apps/gent/RHEL8/cascadelake-ampere-ib/modules/all:/apps/gent/RHEL8/cascadelake-ib/modules/all:/etc/modulefiles/vsc') == 2024-03-25 18:28:08,173 environment.py:93 INFO Environment variable PATH set to /usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools') == 2024-03-25 18:28:08,173 environment.py:93 INFO Environment variable _LMFILES_ set to /etc/modulefiles/vsc/env/vsc/donphan.lua:/etc/modulefiles/vsc/env/slurm/donphan.lua:/etc/modulefiles/vsc/env/software/donphan.lua:/etc/modulefiles/vsc/cluster/donphan.lua (previous value: '/etc/modulefiles/vsc/env/vsc/donphan.lua:/etc/modulefiles/vsc/env/slurm/donphan.lua:/etc/modulefiles/vsc/env/software/donphan.lua:/etc/modulefiles/vsc/cluster/donphan.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/GCCcore/12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/zlib/1.2.13-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/binutils/2.40-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/GCC/12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/numactl/2.0.16-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/XZ/5.4.2-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/libxml2/2.11.4-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/libpciaccess/0.17-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/hwloc/2.9.1-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/OpenSSL/1.1.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/libevent/2.1.12-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/UCX/1.14.1-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/libfabric/1.18.0-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/PMIx/4.2.4-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/UCC/1.2.0-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/OpenMPI/4.1.5-GCC-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/OpenBLAS/0.3.23-GCC-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/FlexiBLAS/3.3.1-GCC-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/FFTW/3.3.10-GCC-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/gompi/2023a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/FFTW.MPI/3.3.10-gompi-2023a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/ScaLAPACK/2.2.0-gompi-2023a-fb.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/foss/2023a.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/ncurses/6.4-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/bzip2/1.0.8-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/cURL/8.0.1-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/libarchive/3.6.2-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/CMake/3.26.3-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/libreadline/8.2-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/Tcl/8.6.13-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/SQLite/3.42.0-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/libffi/3.4.4-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/Python/3.11.3-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/cffi/1.15.1-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/cryptography/41.0.1-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/virtualenv/20.23.1-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/Python-bundle-PyPI/2023.06-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/gfbf/2023a.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/pybind11/2.11.1-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/SciPy-bundle/2023.07-gfbf-2023a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/Biopython/1.83-foss-2023a.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/scikit-build/0.17.6-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/libpng/1.6.39-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/Brotli/1.0.9-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/freetype/2.13.0-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/expat/2.5.0-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/util-linux/2.39-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/fontconfig/2.14.2-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/xorg-macros/1.20.0-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/X11/20230603-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/Tk/8.6.13-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/Tkinter/3.11.3-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/NASM/2.16.01-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/jbigkit/2.1-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/gzip/1.12-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/lz4/1.9.4-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/zstd/1.5.5-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/libdeflate/1.18-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/LibTIFF/4.5.0-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/Pillow/10.0.0-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/Qhull/2020.2-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/Ninja/1.11.1-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/Meson/1.1.1-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/meson-python/0.13.2-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/libyaml/0.2.5-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/giflib/5.2.1-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/libwebp/1.3.1-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/Pillow-SIMD/9.5.0-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/tornado/6.3.2-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/bokeh/3.2.2-foss-2023a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/matplotlib/3.7.2-gfbf-2023a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/networkx/3.1-gfbf-2023a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/numba/0.58.1-foss-2023a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/Pysam/0.22.0-GCC-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/PyYAML/6.0-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/typing-extensions/4.9.0-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/tqdm/4.66.1-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/hatchling/1.18.0-GCCcore-12.3.0.lua') == 2024-03-25 18:28:08,174 environment.py:93 INFO Environment variable _ModuleTable005_ set to ZmluYWwtLjAwMDAwMDAxMi4wMDAwMDAwMDMuKnpmaW5hbCIsCn0sClsiRkZUVy5NUEkiXSA9IHsKZm4gPSAiL3NjcmF0Y2gvZ2VudC92by8wMDEvZ3ZvMDAxMTcvZWFzeWJ1aWxkL1JIRUw4L2Nhc2NhZGVsYWtlLWFtcGVyZS1pYi9tb2R1bGVzL2FsbC9GRlRXLk1QSS8zLjMuMTAtZ29tcGktMjAyM2EubHVhIiwKZnVsbE5hbWUgPSAiRkZUVy5NUEkvMy4zLjEwLWdvbXBpLTIwMjNhIiwKbG9hZE9yZGVyID0gMjUsCnByb3BUID0ge30sCnN0YWNrRGVwdGggPSAyLApzdGF0dXMgPSAiYWN0aXZlIiwKdXNlck5hbWUgPSAiRkZUVy5NUEkvMy4zLjEwLWdvbXBpLTIwMjNhIiwKd1YgPSAiMDAwMDAwMDAzLjAwMDAwMDAwMy4wMDAwMDAwMTAuKmdvbXBpLip6ZmluYWwtLjAwMDAwMjAy (previous value: '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') == 2024-03-25 18:28:08,179 modules.py:472 INFO $MODULEPATH set via list of module paths (w/ 'module use'): /tmp/vsc47063/eb-78i3uhl1/tmpf9srndro/all:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all:/apps/gent/RHEL8/cascadelake-ampere-ib/modules/all:/apps/gent/RHEL8/cascadelake-ib/modules/all:/etc/modulefiles/vsc == 2024-03-25 18:28:20,456 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libyaml/0.2.5-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages/numpy/core/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libffi/3.4.4-GCCcore-12.3.0/lib64:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libreadline/8.2-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/FFTW.MPI/3.3.10-gompi-2023a/lib:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/OpenBLAS/0.3.23-GCC-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libpciaccess/0.17-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/zlib/1.2.13-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libyaml/0.2.5-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages/numpy/core/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libffi/3.4.4-GCCcore-12.3.0/lib64:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libreadline/8.2-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/FFTW.MPI/3.3.10-gompi-2023a/lib:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/OpenBLAS/0.3.23-GCC-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/lib:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libpciaccess/0.17-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/lib') == 2024-03-25 18:28:20,457 easyblock.py:2900 INFO Installing extensions == 2024-03-25 18:28:20,476 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... == 2024-03-25 18:28:20,477 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') == 2024-03-25 18:28:20,477 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') == 2024-03-25 18:28:20,478 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') == 2024-03-25 18:28:20,478 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') == 2024-03-25 18:28:20,479 modules.py:299 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it == 2024-03-25 18:28:20,480 modules.py:455 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all == 2024-03-25 18:28:20,480 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] == 2024-03-25 18:28:20,481 easyconfig.py:1908 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle == 2024-03-25 18:28:20,481 easyconfig.py:1955 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'Cassiopeia') == 2024-03-25 18:28:20,481 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: easyblock = 'PythonBundle' name = 'Cassiopeia' version = '2.0.0' homepage = 'https://github.com/YosefLab/Cassiopeia' description = """A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction.""" toolchain = {'name': 'foss', 'version': '2023a'} # "Biopython>=1.71", OK # "bokeh>=0.12.15", OK # "cython>=0.29.2", OK pybundle # "ete3>=3.1.1", OK # "hits", OK exts # "itolapi", OK exts # "matplotlib>=2.2.2", OK # "nbconvert>=5.4.0", OK exts # "nbformat>=4.4.0", Ok exts # "networkx>=2.5", OK # "ngs-tools>=1.5.3", OK exts # "numba>=0.51.0", OK # "numpy>=1.19.5", OK # "pandas>=1.1.4", OK # "pysam>=0.14.1", OK # "python-Levenshtein", OK exts # "PyYAML>=3.12", OK # "scipy>=1.2.0", OK # "typing-extensions>=3.7.4", OK # "tqdm>=4", OK builddependencies = [ ('CMake', '3.26.3'), ] dependencies = [ ('Python', '3.11.3'), ('Python-bundle-PyPI', '2023.06'), ('Biopython', '1.83'), ('scikit-build', '0.17.6'), ('bokeh', '3.2.2'), # ('ETE', '3.1.3'), ('matplotlib', '3.7.2'), ('networkx', '3.1'), ('numba', '0.58.1'), ('Pysam', '0.22.0'), ('PyYAML', '6.0'), ('typing-extensions', '4.9.0'), ('tqdm', '4.66.1'), ('hatchling', '1.18.0'), ] use_pip = True sanity_pip_check = True # cleo 2.0.1 has requirement rapidfuzz<3.0.0,>=2.2.0, but you have rapidfuzz 3.7.0. # levenshtein 0.25.0 has requirement rapidfuzz<4.0.0,>=3.1.0, but you have rapidfuzz 2.15.1. exts_list = [ ('hatch_nodejs_version', '0.3.2', { 'checksums': ['8a7828d817b71e50bbbbb01c9bfc0b329657b7900c56846489b9c958de15b54c'], }), ('ngs-tools', '1.8.5', { 'checksums': ['380e236a101c5b1ac3c0fcdbcc908a210179b6ef2a93fbea9f4eb0ec2edc1de0'], }), ('nbformat', '5.10.3', { 'checksums': ['60ed5e910ef7c6264b87d644f276b1b49e24011930deef54605188ddeb211685'], }), ('nbconvert', '7.16.3', { 'checksums': ['a6733b78ce3d47c3f85e504998495b07e6ea9cf9bf6ec1c98dda63ec6ad19142'], }), ('itolapi', '4.1.4', { 'checksums': ['68e87ba51d209da556b0e373b3b0456b644a1a732c193fedbd7785ff37b6a2cb'], }), ('hits', '0.4.0', { 'checksums': ['743bfc1b56ab8fcf9fefacfcad4c1f23e9bafec1b42225709dbe097c8e669383'], }), ('Levenshtein', '0.22.0', { 'modulename': False, 'checksums': ['86d285d770551cb648d4fcfe5243449a479e694e56b65272dc6cbda879012051'], }), ('python-Levenshtein', '0.22.0', { 'modulename': 'Levenshtein', 'checksums': ['6f8e2216fbd4610ccfa1bab2e0052fb23de34c2333c192de08150eeb99717702'], }), (name, version, { # 'test_script': 'make test', 'source_urls': ['https://github.com/YosefLab/Cassiopeia/archive/'], 'sources': [{'download_filename': '%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], 'checksums': ['28ae7495152683f5733222255056a1e7b2f7a51e1cee2f23f0d9f8ae5f4c3742'], }), ] sanity_check_commands = [ "cd %(builddir)s/Cassiopeia/Cassiopeia-* && make test", # failing with: ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ] moduleclass = 'bio' == 2024-03-25 18:28:20,482 parser.py:139 INFO Type checking of easyconfig parameter values passed! == 2024-03-25 18:28:20,482 easyconfig.py:686 INFO setting easyconfig parameter builddependencies: value [('CMake', '3.26.3')] (type: ) == 2024-03-25 18:28:20,482 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.11.3'), ('Python-bundle-PyPI', '2023.06'), ('Biopython', '1.83'), ('scikit-build', '0.17.6'), ('bokeh', '3.2.2'), ('matplotlib', '3.7.2'), ('networkx', '3.1'), ('numba', '0.58.1'), ('Pysam', '0.22.0'), ('PyYAML', '6.0'), ('typing-extensions', '4.9.0'), ('tqdm', '4.66.1'), ('hatchling', '1.18.0')] (type: ) == 2024-03-25 18:28:20,482 easyconfig.py:686 INFO setting easyconfig parameter description: value A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction. (type: ) == 2024-03-25 18:28:20,482 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) == 2024-03-25 18:28:20,482 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('hatch_nodejs_version', '0.3.2', {'checksums': ['8a7828d817b71e50bbbbb01c9bfc0b329657b7900c56846489b9c958de15b54c']}), ('ngs-tools', '1.8.5', {'checksums': ['380e236a101c5b1ac3c0fcdbcc908a210179b6ef2a93fbea9f4eb0ec2edc1de0']}), ('nbformat', '5.10.3', {'checksums': ['60ed5e910ef7c6264b87d644f276b1b49e24011930deef54605188ddeb211685']}), ('nbconvert', '7.16.3', {'checksums': ['a6733b78ce3d47c3f85e504998495b07e6ea9cf9bf6ec1c98dda63ec6ad19142']}), ('itolapi', '4.1.4', {'checksums': ['68e87ba51d209da556b0e373b3b0456b644a1a732c193fedbd7785ff37b6a2cb']}), ('hits', '0.4.0', {'checksums': ['743bfc1b56ab8fcf9fefacfcad4c1f23e9bafec1b42225709dbe097c8e669383']}), ('Levenshtein', '0.22.0', {'modulename': False, 'checksums': ['86d285d770551cb648d4fcfe5243449a479e694e56b65272dc6cbda879012051']}), ('python-Levenshtein', '0.22.0', {'modulename': 'Levenshtein', 'checksums': ['6f8e2216fbd4610ccfa1bab2e0052fb23de34c2333c192de08150eeb99717702']}), ('Cassiopeia', '2.0.0', {'source_urls': ['https://github.com/YosefLab/Cassiopeia/archive/'], 'sources': [{'download_filename': '%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], 'checksums': ['28ae7495152683f5733222255056a1e7b2f7a51e1cee2f23f0d9f8ae5f4c3742']})] (type: ) == 2024-03-25 18:28:20,482 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/YosefLab/Cassiopeia (type: ) == 2024-03-25 18:28:20,482 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value bio (type: ) == 2024-03-25 18:28:20,483 easyconfig.py:686 INFO setting easyconfig parameter name: value Cassiopeia (type: ) == 2024-03-25 18:28:20,483 easyconfig.py:686 INFO setting easyconfig parameter sanity_check_commands: value ['cd %(builddir)s/Cassiopeia/Cassiopeia-* && make test'] (type: ) == 2024-03-25 18:28:20,483 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) == 2024-03-25 18:28:20,483 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2023a'} (type: ) == 2024-03-25 18:28:20,483 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) == 2024-03-25 18:28:20,483 easyconfig.py:686 INFO setting easyconfig parameter version: value 2.0.0 (type: ) == 2024-03-25 18:28:20,483 easyconfig.py:747 INFO Parsing dependency specifications... == 2024-03-25 18:28:20,483 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:28:20,487 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' == 2024-03-25 18:28:20,487 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) == 2024-03-25 18:28:20,487 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='cassiopeia', github_account='cassiopeia', mpi_cmd_prefix='mpirun -n 1', name='Cassiopeia', nameletter='C', nameletterlower='c', namelower='cassiopeia', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.3', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='2.0.0', version_major='2', version_major_minor='2.0', version_minor='0', versionprefix='', versionsuffix='' == 2024-03-25 18:28:26,818 modules.py:626 INFO Checking whether CMake/3.26.3-foss-2023a exists... == 2024-03-25 18:28:26,818 modules.py:647 INFO Module CMake/3.26.3-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,822 modules.py:654 INFO Result for existence check of CMake/3.26.3-foss-2023a module: False == 2024-03-25 18:28:26,822 modules.py:626 INFO Checking whether CMake/3.26.3-gompi-2023a exists... == 2024-03-25 18:28:26,822 modules.py:647 INFO Module CMake/3.26.3-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,822 modules.py:654 INFO Result for existence check of CMake/3.26.3-gompi-2023a module: False == 2024-03-25 18:28:26,823 modules.py:626 INFO Checking whether CMake/3.26.3-gfbf-2023a exists... == 2024-03-25 18:28:26,823 modules.py:647 INFO Module CMake/3.26.3-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,823 modules.py:654 INFO Result for existence check of CMake/3.26.3-gfbf-2023a module: False == 2024-03-25 18:28:26,823 modules.py:626 INFO Checking whether CMake/3.26.3-GCC-12.3.0 exists... == 2024-03-25 18:28:26,823 modules.py:647 INFO Module CMake/3.26.3-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,823 modules.py:654 INFO Result for existence check of CMake/3.26.3-GCC-12.3.0 module: False == 2024-03-25 18:28:26,823 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,827 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,827 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,828 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,828 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'CMake', 'version': '3.26.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:26,829 modules.py:626 INFO Checking whether Python/3.11.3-foss-2023a exists... == 2024-03-25 18:28:26,829 modules.py:647 INFO Module Python/3.11.3-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,830 modules.py:654 INFO Result for existence check of Python/3.11.3-foss-2023a module: False == 2024-03-25 18:28:26,830 modules.py:626 INFO Checking whether Python/3.11.3-gompi-2023a exists... == 2024-03-25 18:28:26,830 modules.py:647 INFO Module Python/3.11.3-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,830 modules.py:654 INFO Result for existence check of Python/3.11.3-gompi-2023a module: False == 2024-03-25 18:28:26,831 modules.py:626 INFO Checking whether Python/3.11.3-gfbf-2023a exists... == 2024-03-25 18:28:26,831 modules.py:647 INFO Module Python/3.11.3-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,831 modules.py:654 INFO Result for existence check of Python/3.11.3-gfbf-2023a module: False == 2024-03-25 18:28:26,831 modules.py:626 INFO Checking whether Python/3.11.3-GCC-12.3.0 exists... == 2024-03-25 18:28:26,831 modules.py:647 INFO Module Python/3.11.3-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,831 modules.py:654 INFO Result for existence check of Python/3.11.3-GCC-12.3.0 module: False == 2024-03-25 18:28:26,831 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,833 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,833 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,833 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,833 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.11.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:26,834 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-foss-2023a exists... == 2024-03-25 18:28:26,835 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,835 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-foss-2023a module: False == 2024-03-25 18:28:26,835 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-gompi-2023a exists... == 2024-03-25 18:28:26,835 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,835 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-gompi-2023a module: False == 2024-03-25 18:28:26,835 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-gfbf-2023a exists... == 2024-03-25 18:28:26,836 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,836 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-gfbf-2023a module: False == 2024-03-25 18:28:26,836 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-GCC-12.3.0 exists... == 2024-03-25 18:28:26,836 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,836 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-GCC-12.3.0 module: False == 2024-03-25 18:28:26,836 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,837 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,837 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,837 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,837 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python-bundle-PyPI', 'version': '2023.06', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:26,838 modules.py:626 INFO Checking whether Biopython/1.83-gompi-2023a exists... == 2024-03-25 18:28:26,838 modules.py:647 INFO Module Biopython/1.83-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,839 modules.py:654 INFO Result for existence check of Biopython/1.83-gompi-2023a module: False == 2024-03-25 18:28:26,840 modules.py:626 INFO Checking whether Biopython/1.83-gfbf-2023a exists... == 2024-03-25 18:28:26,840 modules.py:647 INFO Module Biopython/1.83-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,840 modules.py:654 INFO Result for existence check of Biopython/1.83-gfbf-2023a module: False == 2024-03-25 18:28:26,840 modules.py:626 INFO Checking whether Biopython/1.83-GCC-12.3.0 exists... == 2024-03-25 18:28:26,840 modules.py:647 INFO Module Biopython/1.83-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,840 modules.py:654 INFO Result for existence check of Biopython/1.83-GCC-12.3.0 module: False == 2024-03-25 18:28:26,840 modules.py:626 INFO Checking whether Biopython/1.83-GCCcore-12.3.0 exists... == 2024-03-25 18:28:26,841 modules.py:647 INFO Module Biopython/1.83-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,841 modules.py:654 INFO Result for existence check of Biopython/1.83-GCCcore-12.3.0 module: False == 2024-03-25 18:28:26,841 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Biopython', 'version': '1.83', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2023a'} == 2024-03-25 18:28:26,842 modules.py:626 INFO Checking whether scikit-build/0.17.6-foss-2023a exists... == 2024-03-25 18:28:26,842 modules.py:647 INFO Module scikit-build/0.17.6-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,843 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-foss-2023a module: False == 2024-03-25 18:28:26,843 modules.py:626 INFO Checking whether scikit-build/0.17.6-gompi-2023a exists... == 2024-03-25 18:28:26,843 modules.py:647 INFO Module scikit-build/0.17.6-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,843 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-gompi-2023a module: False == 2024-03-25 18:28:26,843 modules.py:626 INFO Checking whether scikit-build/0.17.6-gfbf-2023a exists... == 2024-03-25 18:28:26,843 modules.py:647 INFO Module scikit-build/0.17.6-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,844 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-gfbf-2023a module: False == 2024-03-25 18:28:26,844 modules.py:626 INFO Checking whether scikit-build/0.17.6-GCC-12.3.0 exists... == 2024-03-25 18:28:26,844 modules.py:647 INFO Module scikit-build/0.17.6-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,844 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-GCC-12.3.0 module: False == 2024-03-25 18:28:26,844 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,847 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,847 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,847 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,847 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-build', 'version': '0.17.6', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:26,848 modules.py:626 INFO Checking whether bokeh/3.2.2-gompi-2023a exists... == 2024-03-25 18:28:26,848 modules.py:647 INFO Module bokeh/3.2.2-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,849 modules.py:654 INFO Result for existence check of bokeh/3.2.2-gompi-2023a module: False == 2024-03-25 18:28:26,849 modules.py:626 INFO Checking whether bokeh/3.2.2-gfbf-2023a exists... == 2024-03-25 18:28:26,849 modules.py:647 INFO Module bokeh/3.2.2-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,850 modules.py:654 INFO Result for existence check of bokeh/3.2.2-gfbf-2023a module: False == 2024-03-25 18:28:26,850 modules.py:626 INFO Checking whether bokeh/3.2.2-GCC-12.3.0 exists... == 2024-03-25 18:28:26,850 modules.py:647 INFO Module bokeh/3.2.2-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,850 modules.py:654 INFO Result for existence check of bokeh/3.2.2-GCC-12.3.0 module: False == 2024-03-25 18:28:26,850 modules.py:626 INFO Checking whether bokeh/3.2.2-GCCcore-12.3.0 exists... == 2024-03-25 18:28:26,850 modules.py:647 INFO Module bokeh/3.2.2-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,850 modules.py:654 INFO Result for existence check of bokeh/3.2.2-GCCcore-12.3.0 module: False == 2024-03-25 18:28:26,851 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'bokeh', 'version': '3.2.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2023a'} == 2024-03-25 18:28:26,852 modules.py:626 INFO Checking whether matplotlib/3.7.2-foss-2023a exists... == 2024-03-25 18:28:26,852 modules.py:647 INFO Module matplotlib/3.7.2-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,853 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-foss-2023a module: False == 2024-03-25 18:28:26,853 modules.py:626 INFO Checking whether matplotlib/3.7.2-gompi-2023a exists... == 2024-03-25 18:28:26,853 modules.py:647 INFO Module matplotlib/3.7.2-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,853 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-gompi-2023a module: False == 2024-03-25 18:28:26,854 modules.py:626 INFO Checking whether matplotlib/3.7.2-GCC-12.3.0 exists... == 2024-03-25 18:28:26,854 modules.py:647 INFO Module matplotlib/3.7.2-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,854 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-GCC-12.3.0 module: False == 2024-03-25 18:28:26,854 modules.py:626 INFO Checking whether matplotlib/3.7.2-GCCcore-12.3.0 exists... == 2024-03-25 18:28:26,854 modules.py:647 INFO Module matplotlib/3.7.2-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,854 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-GCCcore-12.3.0 module: False == 2024-03-25 18:28:26,854 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,857 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,857 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'matplotlib', 'version': '3.7.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'gfbf', 'version': '2023a'} == 2024-03-25 18:28:26,858 modules.py:626 INFO Checking whether networkx/3.1-foss-2023a exists... == 2024-03-25 18:28:26,858 modules.py:647 INFO Module networkx/3.1-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,859 modules.py:654 INFO Result for existence check of networkx/3.1-foss-2023a module: False == 2024-03-25 18:28:26,860 modules.py:626 INFO Checking whether networkx/3.1-gompi-2023a exists... == 2024-03-25 18:28:26,860 modules.py:647 INFO Module networkx/3.1-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,860 modules.py:654 INFO Result for existence check of networkx/3.1-gompi-2023a module: False == 2024-03-25 18:28:26,860 modules.py:626 INFO Checking whether networkx/3.1-GCC-12.3.0 exists... == 2024-03-25 18:28:26,860 modules.py:647 INFO Module networkx/3.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,860 modules.py:654 INFO Result for existence check of networkx/3.1-GCC-12.3.0 module: False == 2024-03-25 18:28:26,861 modules.py:626 INFO Checking whether networkx/3.1-GCCcore-12.3.0 exists... == 2024-03-25 18:28:26,861 modules.py:647 INFO Module networkx/3.1-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,861 modules.py:654 INFO Result for existence check of networkx/3.1-GCCcore-12.3.0 module: False == 2024-03-25 18:28:26,861 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,862 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,862 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '3.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'gfbf', 'version': '2023a'} == 2024-03-25 18:28:26,863 modules.py:626 INFO Checking whether numba/0.58.1-gompi-2023a exists... == 2024-03-25 18:28:26,864 modules.py:647 INFO Module numba/0.58.1-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,865 modules.py:654 INFO Result for existence check of numba/0.58.1-gompi-2023a module: False == 2024-03-25 18:28:26,865 modules.py:626 INFO Checking whether numba/0.58.1-gfbf-2023a exists... == 2024-03-25 18:28:26,865 modules.py:647 INFO Module numba/0.58.1-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,865 modules.py:654 INFO Result for existence check of numba/0.58.1-gfbf-2023a module: False == 2024-03-25 18:28:26,865 modules.py:626 INFO Checking whether numba/0.58.1-GCC-12.3.0 exists... == 2024-03-25 18:28:26,865 modules.py:647 INFO Module numba/0.58.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,866 modules.py:654 INFO Result for existence check of numba/0.58.1-GCC-12.3.0 module: False == 2024-03-25 18:28:26,866 modules.py:626 INFO Checking whether numba/0.58.1-GCCcore-12.3.0 exists... == 2024-03-25 18:28:26,866 modules.py:647 INFO Module numba/0.58.1-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,866 modules.py:654 INFO Result for existence check of numba/0.58.1-GCCcore-12.3.0 module: False == 2024-03-25 18:28:26,866 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.58.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2023a'} == 2024-03-25 18:28:26,867 modules.py:626 INFO Checking whether Pysam/0.22.0-foss-2023a exists... == 2024-03-25 18:28:26,867 modules.py:647 INFO Module Pysam/0.22.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,877 modules.py:654 INFO Result for existence check of Pysam/0.22.0-foss-2023a module: False == 2024-03-25 18:28:26,877 modules.py:626 INFO Checking whether Pysam/0.22.0-gompi-2023a exists... == 2024-03-25 18:28:26,877 modules.py:647 INFO Module Pysam/0.22.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,877 modules.py:654 INFO Result for existence check of Pysam/0.22.0-gompi-2023a module: False == 2024-03-25 18:28:26,877 modules.py:626 INFO Checking whether Pysam/0.22.0-gfbf-2023a exists... == 2024-03-25 18:28:26,878 modules.py:647 INFO Module Pysam/0.22.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,878 modules.py:654 INFO Result for existence check of Pysam/0.22.0-gfbf-2023a module: False == 2024-03-25 18:28:26,878 modules.py:626 INFO Checking whether Pysam/0.22.0-GCCcore-12.3.0 exists... == 2024-03-25 18:28:26,878 modules.py:647 INFO Module Pysam/0.22.0-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,878 modules.py:654 INFO Result for existence check of Pysam/0.22.0-GCCcore-12.3.0 module: False == 2024-03-25 18:28:26,878 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,879 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,879 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,879 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Pysam', 'version': '0.22.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '12.3.0'} == 2024-03-25 18:28:26,880 modules.py:626 INFO Checking whether PyYAML/6.0-foss-2023a exists... == 2024-03-25 18:28:26,880 modules.py:647 INFO Module PyYAML/6.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,883 modules.py:654 INFO Result for existence check of PyYAML/6.0-foss-2023a module: False == 2024-03-25 18:28:26,883 modules.py:626 INFO Checking whether PyYAML/6.0-gompi-2023a exists... == 2024-03-25 18:28:26,883 modules.py:647 INFO Module PyYAML/6.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,883 modules.py:654 INFO Result for existence check of PyYAML/6.0-gompi-2023a module: False == 2024-03-25 18:28:26,884 modules.py:626 INFO Checking whether PyYAML/6.0-gfbf-2023a exists... == 2024-03-25 18:28:26,884 modules.py:647 INFO Module PyYAML/6.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,884 modules.py:654 INFO Result for existence check of PyYAML/6.0-gfbf-2023a module: False == 2024-03-25 18:28:26,884 modules.py:626 INFO Checking whether PyYAML/6.0-GCC-12.3.0 exists... == 2024-03-25 18:28:26,884 modules.py:647 INFO Module PyYAML/6.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,884 modules.py:654 INFO Result for existence check of PyYAML/6.0-GCC-12.3.0 module: False == 2024-03-25 18:28:26,884 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,886 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,886 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,886 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,886 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyYAML', 'version': '6.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:26,887 modules.py:626 INFO Checking whether typing-extensions/4.9.0-foss-2023a exists... == 2024-03-25 18:28:26,887 modules.py:647 INFO Module typing-extensions/4.9.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,888 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-foss-2023a module: False == 2024-03-25 18:28:26,888 modules.py:626 INFO Checking whether typing-extensions/4.9.0-gompi-2023a exists... == 2024-03-25 18:28:26,888 modules.py:647 INFO Module typing-extensions/4.9.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,888 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-gompi-2023a module: False == 2024-03-25 18:28:26,888 modules.py:626 INFO Checking whether typing-extensions/4.9.0-gfbf-2023a exists... == 2024-03-25 18:28:26,888 modules.py:647 INFO Module typing-extensions/4.9.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,889 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-gfbf-2023a module: False == 2024-03-25 18:28:26,889 modules.py:626 INFO Checking whether typing-extensions/4.9.0-GCC-12.3.0 exists... == 2024-03-25 18:28:26,889 modules.py:647 INFO Module typing-extensions/4.9.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,889 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-GCC-12.3.0 module: False == 2024-03-25 18:28:26,889 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,898 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,898 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,898 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,898 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'typing-extensions', 'version': '4.9.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:26,899 modules.py:626 INFO Checking whether tqdm/4.66.1-foss-2023a exists... == 2024-03-25 18:28:26,899 modules.py:647 INFO Module tqdm/4.66.1-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,900 modules.py:654 INFO Result for existence check of tqdm/4.66.1-foss-2023a module: False == 2024-03-25 18:28:26,900 modules.py:626 INFO Checking whether tqdm/4.66.1-gompi-2023a exists... == 2024-03-25 18:28:26,900 modules.py:647 INFO Module tqdm/4.66.1-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,901 modules.py:654 INFO Result for existence check of tqdm/4.66.1-gompi-2023a module: False == 2024-03-25 18:28:26,901 modules.py:626 INFO Checking whether tqdm/4.66.1-gfbf-2023a exists... == 2024-03-25 18:28:26,901 modules.py:647 INFO Module tqdm/4.66.1-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,901 modules.py:654 INFO Result for existence check of tqdm/4.66.1-gfbf-2023a module: False == 2024-03-25 18:28:26,901 modules.py:626 INFO Checking whether tqdm/4.66.1-GCC-12.3.0 exists... == 2024-03-25 18:28:26,901 modules.py:647 INFO Module tqdm/4.66.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,901 modules.py:654 INFO Result for existence check of tqdm/4.66.1-GCC-12.3.0 module: False == 2024-03-25 18:28:26,902 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,902 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,902 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,902 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,903 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'tqdm', 'version': '4.66.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:26,904 modules.py:626 INFO Checking whether hatchling/1.18.0-foss-2023a exists... == 2024-03-25 18:28:26,904 modules.py:647 INFO Module hatchling/1.18.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,904 modules.py:654 INFO Result for existence check of hatchling/1.18.0-foss-2023a module: False == 2024-03-25 18:28:26,905 modules.py:626 INFO Checking whether hatchling/1.18.0-gompi-2023a exists... == 2024-03-25 18:28:26,905 modules.py:647 INFO Module hatchling/1.18.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,905 modules.py:654 INFO Result for existence check of hatchling/1.18.0-gompi-2023a module: False == 2024-03-25 18:28:26,905 modules.py:626 INFO Checking whether hatchling/1.18.0-gfbf-2023a exists... == 2024-03-25 18:28:26,905 modules.py:647 INFO Module hatchling/1.18.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,905 modules.py:654 INFO Result for existence check of hatchling/1.18.0-gfbf-2023a module: False == 2024-03-25 18:28:26,905 modules.py:626 INFO Checking whether hatchling/1.18.0-GCC-12.3.0 exists... == 2024-03-25 18:28:26,906 modules.py:647 INFO Module hatchling/1.18.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,906 modules.py:654 INFO Result for existence check of hatchling/1.18.0-GCC-12.3.0 module: False == 2024-03-25 18:28:26,906 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,907 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,907 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,907 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,907 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'hatchling', 'version': '1.18.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:26,909 pythonpackage.py:408 INFO Using default value for expected module name (lowercase software name): 'hatch_nodejs_version' == 2024-03-25 18:28:26,909 pythonpackage.py:441 INFO Using pip with --no-deps option == 2024-03-25 18:28:26,910 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc47063/eb-78i3uhl1 (previously undefined) == 2024-03-25 18:28:26,910 pythonpackage.py:458 INFO Using /tmp/vsc47063/eb-78i3uhl1 as pip cache directory == 2024-03-25 18:28:26,910 pythonpackage.py:473 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command == 2024-03-25 18:28:26,925 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... == 2024-03-25 18:28:26,926 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') == 2024-03-25 18:28:26,927 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') == 2024-03-25 18:28:26,927 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') == 2024-03-25 18:28:26,927 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') == 2024-03-25 18:28:26,928 modules.py:299 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it == 2024-03-25 18:28:26,928 modules.py:455 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all == 2024-03-25 18:28:26,929 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] == 2024-03-25 18:28:26,929 easyconfig.py:1908 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle == 2024-03-25 18:28:26,930 easyconfig.py:1955 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'Cassiopeia') == 2024-03-25 18:28:26,930 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: easyblock = 'PythonBundle' name = 'Cassiopeia' version = '2.0.0' homepage = 'https://github.com/YosefLab/Cassiopeia' description = """A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction.""" toolchain = {'name': 'foss', 'version': '2023a'} # "Biopython>=1.71", OK # "bokeh>=0.12.15", OK # "cython>=0.29.2", OK pybundle # "ete3>=3.1.1", OK # "hits", OK exts # "itolapi", OK exts # "matplotlib>=2.2.2", OK # "nbconvert>=5.4.0", OK exts # "nbformat>=4.4.0", Ok exts # "networkx>=2.5", OK # "ngs-tools>=1.5.3", OK exts # "numba>=0.51.0", OK # "numpy>=1.19.5", OK # "pandas>=1.1.4", OK # "pysam>=0.14.1", OK # "python-Levenshtein", OK exts # "PyYAML>=3.12", OK # "scipy>=1.2.0", OK # "typing-extensions>=3.7.4", OK # "tqdm>=4", OK builddependencies = [ ('CMake', '3.26.3'), ] dependencies = [ ('Python', '3.11.3'), ('Python-bundle-PyPI', '2023.06'), ('Biopython', '1.83'), ('scikit-build', '0.17.6'), ('bokeh', '3.2.2'), # ('ETE', '3.1.3'), ('matplotlib', '3.7.2'), ('networkx', '3.1'), ('numba', '0.58.1'), ('Pysam', '0.22.0'), ('PyYAML', '6.0'), ('typing-extensions', '4.9.0'), ('tqdm', '4.66.1'), ('hatchling', '1.18.0'), ] use_pip = True sanity_pip_check = True # cleo 2.0.1 has requirement rapidfuzz<3.0.0,>=2.2.0, but you have rapidfuzz 3.7.0. # levenshtein 0.25.0 has requirement rapidfuzz<4.0.0,>=3.1.0, but you have rapidfuzz 2.15.1. exts_list = [ ('hatch_nodejs_version', '0.3.2', { 'checksums': ['8a7828d817b71e50bbbbb01c9bfc0b329657b7900c56846489b9c958de15b54c'], }), ('ngs-tools', '1.8.5', { 'checksums': ['380e236a101c5b1ac3c0fcdbcc908a210179b6ef2a93fbea9f4eb0ec2edc1de0'], }), ('nbformat', '5.10.3', { 'checksums': ['60ed5e910ef7c6264b87d644f276b1b49e24011930deef54605188ddeb211685'], }), ('nbconvert', '7.16.3', { 'checksums': ['a6733b78ce3d47c3f85e504998495b07e6ea9cf9bf6ec1c98dda63ec6ad19142'], }), ('itolapi', '4.1.4', { 'checksums': ['68e87ba51d209da556b0e373b3b0456b644a1a732c193fedbd7785ff37b6a2cb'], }), ('hits', '0.4.0', { 'checksums': ['743bfc1b56ab8fcf9fefacfcad4c1f23e9bafec1b42225709dbe097c8e669383'], }), ('Levenshtein', '0.22.0', { 'modulename': False, 'checksums': ['86d285d770551cb648d4fcfe5243449a479e694e56b65272dc6cbda879012051'], }), ('python-Levenshtein', '0.22.0', { 'modulename': 'Levenshtein', 'checksums': ['6f8e2216fbd4610ccfa1bab2e0052fb23de34c2333c192de08150eeb99717702'], }), (name, version, { # 'test_script': 'make test', 'source_urls': ['https://github.com/YosefLab/Cassiopeia/archive/'], 'sources': [{'download_filename': '%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], 'checksums': ['28ae7495152683f5733222255056a1e7b2f7a51e1cee2f23f0d9f8ae5f4c3742'], }), ] sanity_check_commands = [ "cd %(builddir)s/Cassiopeia/Cassiopeia-* && make test", # failing with: ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ] moduleclass = 'bio' == 2024-03-25 18:28:26,930 parser.py:139 INFO Type checking of easyconfig parameter values passed! == 2024-03-25 18:28:26,931 easyconfig.py:686 INFO setting easyconfig parameter builddependencies: value [('CMake', '3.26.3')] (type: ) == 2024-03-25 18:28:26,931 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.11.3'), ('Python-bundle-PyPI', '2023.06'), ('Biopython', '1.83'), ('scikit-build', '0.17.6'), ('bokeh', '3.2.2'), ('matplotlib', '3.7.2'), ('networkx', '3.1'), ('numba', '0.58.1'), ('Pysam', '0.22.0'), ('PyYAML', '6.0'), ('typing-extensions', '4.9.0'), ('tqdm', '4.66.1'), ('hatchling', '1.18.0')] (type: ) == 2024-03-25 18:28:26,931 easyconfig.py:686 INFO setting easyconfig parameter description: value A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction. (type: ) == 2024-03-25 18:28:26,931 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) == 2024-03-25 18:28:26,931 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('hatch_nodejs_version', '0.3.2', {'checksums': ['8a7828d817b71e50bbbbb01c9bfc0b329657b7900c56846489b9c958de15b54c']}), ('ngs-tools', '1.8.5', {'checksums': ['380e236a101c5b1ac3c0fcdbcc908a210179b6ef2a93fbea9f4eb0ec2edc1de0']}), ('nbformat', '5.10.3', {'checksums': ['60ed5e910ef7c6264b87d644f276b1b49e24011930deef54605188ddeb211685']}), ('nbconvert', '7.16.3', {'checksums': ['a6733b78ce3d47c3f85e504998495b07e6ea9cf9bf6ec1c98dda63ec6ad19142']}), ('itolapi', '4.1.4', {'checksums': ['68e87ba51d209da556b0e373b3b0456b644a1a732c193fedbd7785ff37b6a2cb']}), ('hits', '0.4.0', {'checksums': ['743bfc1b56ab8fcf9fefacfcad4c1f23e9bafec1b42225709dbe097c8e669383']}), ('Levenshtein', '0.22.0', {'modulename': False, 'checksums': ['86d285d770551cb648d4fcfe5243449a479e694e56b65272dc6cbda879012051']}), ('python-Levenshtein', '0.22.0', {'modulename': 'Levenshtein', 'checksums': ['6f8e2216fbd4610ccfa1bab2e0052fb23de34c2333c192de08150eeb99717702']}), ('Cassiopeia', '2.0.0', {'source_urls': ['https://github.com/YosefLab/Cassiopeia/archive/'], 'sources': [{'download_filename': '%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], 'checksums': ['28ae7495152683f5733222255056a1e7b2f7a51e1cee2f23f0d9f8ae5f4c3742']})] (type: ) == 2024-03-25 18:28:26,931 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/YosefLab/Cassiopeia (type: ) == 2024-03-25 18:28:26,931 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value bio (type: ) == 2024-03-25 18:28:26,931 easyconfig.py:686 INFO setting easyconfig parameter name: value Cassiopeia (type: ) == 2024-03-25 18:28:26,931 easyconfig.py:686 INFO setting easyconfig parameter sanity_check_commands: value ['cd %(builddir)s/Cassiopeia/Cassiopeia-* && make test'] (type: ) == 2024-03-25 18:28:26,931 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) == 2024-03-25 18:28:26,931 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2023a'} (type: ) == 2024-03-25 18:28:26,931 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) == 2024-03-25 18:28:26,931 easyconfig.py:686 INFO setting easyconfig parameter version: value 2.0.0 (type: ) == 2024-03-25 18:28:26,931 easyconfig.py:747 INFO Parsing dependency specifications... == 2024-03-25 18:28:26,932 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:28:26,937 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' == 2024-03-25 18:28:26,937 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) == 2024-03-25 18:28:26,937 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='cassiopeia', github_account='cassiopeia', mpi_cmd_prefix='mpirun -n 1', name='Cassiopeia', nameletter='C', nameletterlower='c', namelower='cassiopeia', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.3', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='2.0.0', version_major='2', version_major_minor='2.0', version_minor='0', versionprefix='', versionsuffix='' == 2024-03-25 18:28:26,938 modules.py:626 INFO Checking whether CMake/3.26.3-foss-2023a exists... == 2024-03-25 18:28:26,938 modules.py:647 INFO Module CMake/3.26.3-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,938 modules.py:654 INFO Result for existence check of CMake/3.26.3-foss-2023a module: False == 2024-03-25 18:28:26,938 modules.py:626 INFO Checking whether CMake/3.26.3-gompi-2023a exists... == 2024-03-25 18:28:26,938 modules.py:647 INFO Module CMake/3.26.3-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,939 modules.py:654 INFO Result for existence check of CMake/3.26.3-gompi-2023a module: False == 2024-03-25 18:28:26,939 modules.py:626 INFO Checking whether CMake/3.26.3-gfbf-2023a exists... == 2024-03-25 18:28:26,939 modules.py:647 INFO Module CMake/3.26.3-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,939 modules.py:654 INFO Result for existence check of CMake/3.26.3-gfbf-2023a module: False == 2024-03-25 18:28:26,939 modules.py:626 INFO Checking whether CMake/3.26.3-GCC-12.3.0 exists... == 2024-03-25 18:28:26,939 modules.py:647 INFO Module CMake/3.26.3-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,939 modules.py:654 INFO Result for existence check of CMake/3.26.3-GCC-12.3.0 module: False == 2024-03-25 18:28:26,940 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,940 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,940 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,940 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,940 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'CMake', 'version': '3.26.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:26,941 modules.py:626 INFO Checking whether Python/3.11.3-foss-2023a exists... == 2024-03-25 18:28:26,941 modules.py:647 INFO Module Python/3.11.3-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,942 modules.py:654 INFO Result for existence check of Python/3.11.3-foss-2023a module: False == 2024-03-25 18:28:26,942 modules.py:626 INFO Checking whether Python/3.11.3-gompi-2023a exists... == 2024-03-25 18:28:26,942 modules.py:647 INFO Module Python/3.11.3-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,942 modules.py:654 INFO Result for existence check of Python/3.11.3-gompi-2023a module: False == 2024-03-25 18:28:26,942 modules.py:626 INFO Checking whether Python/3.11.3-gfbf-2023a exists... == 2024-03-25 18:28:26,942 modules.py:647 INFO Module Python/3.11.3-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,943 modules.py:654 INFO Result for existence check of Python/3.11.3-gfbf-2023a module: False == 2024-03-25 18:28:26,943 modules.py:626 INFO Checking whether Python/3.11.3-GCC-12.3.0 exists... == 2024-03-25 18:28:26,943 modules.py:647 INFO Module Python/3.11.3-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,943 modules.py:654 INFO Result for existence check of Python/3.11.3-GCC-12.3.0 module: False == 2024-03-25 18:28:26,943 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,943 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,943 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,943 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,944 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.11.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:26,945 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-foss-2023a exists... == 2024-03-25 18:28:26,945 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,945 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-foss-2023a module: False == 2024-03-25 18:28:26,945 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-gompi-2023a exists... == 2024-03-25 18:28:26,945 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,945 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-gompi-2023a module: False == 2024-03-25 18:28:26,946 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-gfbf-2023a exists... == 2024-03-25 18:28:26,946 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,946 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-gfbf-2023a module: False == 2024-03-25 18:28:26,946 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-GCC-12.3.0 exists... == 2024-03-25 18:28:26,946 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,946 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-GCC-12.3.0 module: False == 2024-03-25 18:28:26,946 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,947 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,947 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,947 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,947 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python-bundle-PyPI', 'version': '2023.06', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:26,948 modules.py:626 INFO Checking whether Biopython/1.83-gompi-2023a exists... == 2024-03-25 18:28:26,948 modules.py:647 INFO Module Biopython/1.83-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,948 modules.py:654 INFO Result for existence check of Biopython/1.83-gompi-2023a module: False == 2024-03-25 18:28:26,948 modules.py:626 INFO Checking whether Biopython/1.83-gfbf-2023a exists... == 2024-03-25 18:28:26,948 modules.py:647 INFO Module Biopython/1.83-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,949 modules.py:654 INFO Result for existence check of Biopython/1.83-gfbf-2023a module: False == 2024-03-25 18:28:26,949 modules.py:626 INFO Checking whether Biopython/1.83-GCC-12.3.0 exists... == 2024-03-25 18:28:26,949 modules.py:647 INFO Module Biopython/1.83-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,949 modules.py:654 INFO Result for existence check of Biopython/1.83-GCC-12.3.0 module: False == 2024-03-25 18:28:26,949 modules.py:626 INFO Checking whether Biopython/1.83-GCCcore-12.3.0 exists... == 2024-03-25 18:28:26,949 modules.py:647 INFO Module Biopython/1.83-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,950 modules.py:654 INFO Result for existence check of Biopython/1.83-GCCcore-12.3.0 module: False == 2024-03-25 18:28:26,950 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Biopython', 'version': '1.83', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2023a'} == 2024-03-25 18:28:26,951 modules.py:626 INFO Checking whether scikit-build/0.17.6-foss-2023a exists... == 2024-03-25 18:28:26,951 modules.py:647 INFO Module scikit-build/0.17.6-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,951 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-foss-2023a module: False == 2024-03-25 18:28:26,951 modules.py:626 INFO Checking whether scikit-build/0.17.6-gompi-2023a exists... == 2024-03-25 18:28:26,951 modules.py:647 INFO Module scikit-build/0.17.6-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,951 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-gompi-2023a module: False == 2024-03-25 18:28:26,952 modules.py:626 INFO Checking whether scikit-build/0.17.6-gfbf-2023a exists... == 2024-03-25 18:28:26,952 modules.py:647 INFO Module scikit-build/0.17.6-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,952 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-gfbf-2023a module: False == 2024-03-25 18:28:26,952 modules.py:626 INFO Checking whether scikit-build/0.17.6-GCC-12.3.0 exists... == 2024-03-25 18:28:26,952 modules.py:647 INFO Module scikit-build/0.17.6-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,952 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-GCC-12.3.0 module: False == 2024-03-25 18:28:26,953 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,953 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,953 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,953 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,953 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-build', 'version': '0.17.6', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:26,954 modules.py:626 INFO Checking whether bokeh/3.2.2-gompi-2023a exists... == 2024-03-25 18:28:26,954 modules.py:647 INFO Module bokeh/3.2.2-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,954 modules.py:654 INFO Result for existence check of bokeh/3.2.2-gompi-2023a module: False == 2024-03-25 18:28:26,955 modules.py:626 INFO Checking whether bokeh/3.2.2-gfbf-2023a exists... == 2024-03-25 18:28:26,955 modules.py:647 INFO Module bokeh/3.2.2-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,955 modules.py:654 INFO Result for existence check of bokeh/3.2.2-gfbf-2023a module: False == 2024-03-25 18:28:26,955 modules.py:626 INFO Checking whether bokeh/3.2.2-GCC-12.3.0 exists... == 2024-03-25 18:28:26,955 modules.py:647 INFO Module bokeh/3.2.2-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,955 modules.py:654 INFO Result for existence check of bokeh/3.2.2-GCC-12.3.0 module: False == 2024-03-25 18:28:26,955 modules.py:626 INFO Checking whether bokeh/3.2.2-GCCcore-12.3.0 exists... == 2024-03-25 18:28:26,956 modules.py:647 INFO Module bokeh/3.2.2-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,956 modules.py:654 INFO Result for existence check of bokeh/3.2.2-GCCcore-12.3.0 module: False == 2024-03-25 18:28:26,956 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'bokeh', 'version': '3.2.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2023a'} == 2024-03-25 18:28:26,957 modules.py:626 INFO Checking whether matplotlib/3.7.2-foss-2023a exists... == 2024-03-25 18:28:26,957 modules.py:647 INFO Module matplotlib/3.7.2-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,957 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-foss-2023a module: False == 2024-03-25 18:28:26,957 modules.py:626 INFO Checking whether matplotlib/3.7.2-gompi-2023a exists... == 2024-03-25 18:28:26,957 modules.py:647 INFO Module matplotlib/3.7.2-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,958 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-gompi-2023a module: False == 2024-03-25 18:28:26,958 modules.py:626 INFO Checking whether matplotlib/3.7.2-GCC-12.3.0 exists... == 2024-03-25 18:28:26,958 modules.py:647 INFO Module matplotlib/3.7.2-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,958 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-GCC-12.3.0 module: False == 2024-03-25 18:28:26,958 modules.py:626 INFO Checking whether matplotlib/3.7.2-GCCcore-12.3.0 exists... == 2024-03-25 18:28:26,958 modules.py:647 INFO Module matplotlib/3.7.2-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,959 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-GCCcore-12.3.0 module: False == 2024-03-25 18:28:26,959 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,959 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,959 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'matplotlib', 'version': '3.7.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'gfbf', 'version': '2023a'} == 2024-03-25 18:28:26,960 modules.py:626 INFO Checking whether networkx/3.1-foss-2023a exists... == 2024-03-25 18:28:26,960 modules.py:647 INFO Module networkx/3.1-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,960 modules.py:654 INFO Result for existence check of networkx/3.1-foss-2023a module: False == 2024-03-25 18:28:26,960 modules.py:626 INFO Checking whether networkx/3.1-gompi-2023a exists... == 2024-03-25 18:28:26,960 modules.py:647 INFO Module networkx/3.1-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,961 modules.py:654 INFO Result for existence check of networkx/3.1-gompi-2023a module: False == 2024-03-25 18:28:26,961 modules.py:626 INFO Checking whether networkx/3.1-GCC-12.3.0 exists... == 2024-03-25 18:28:26,961 modules.py:647 INFO Module networkx/3.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,961 modules.py:654 INFO Result for existence check of networkx/3.1-GCC-12.3.0 module: False == 2024-03-25 18:28:26,961 modules.py:626 INFO Checking whether networkx/3.1-GCCcore-12.3.0 exists... == 2024-03-25 18:28:26,961 modules.py:647 INFO Module networkx/3.1-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,962 modules.py:654 INFO Result for existence check of networkx/3.1-GCCcore-12.3.0 module: False == 2024-03-25 18:28:26,962 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,962 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,962 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '3.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'gfbf', 'version': '2023a'} == 2024-03-25 18:28:26,963 modules.py:626 INFO Checking whether numba/0.58.1-gompi-2023a exists... == 2024-03-25 18:28:26,963 modules.py:647 INFO Module numba/0.58.1-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,963 modules.py:654 INFO Result for existence check of numba/0.58.1-gompi-2023a module: False == 2024-03-25 18:28:26,964 modules.py:626 INFO Checking whether numba/0.58.1-gfbf-2023a exists... == 2024-03-25 18:28:26,964 modules.py:647 INFO Module numba/0.58.1-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,964 modules.py:654 INFO Result for existence check of numba/0.58.1-gfbf-2023a module: False == 2024-03-25 18:28:26,964 modules.py:626 INFO Checking whether numba/0.58.1-GCC-12.3.0 exists... == 2024-03-25 18:28:26,964 modules.py:647 INFO Module numba/0.58.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,964 modules.py:654 INFO Result for existence check of numba/0.58.1-GCC-12.3.0 module: False == 2024-03-25 18:28:26,964 modules.py:626 INFO Checking whether numba/0.58.1-GCCcore-12.3.0 exists... == 2024-03-25 18:28:26,965 modules.py:647 INFO Module numba/0.58.1-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,965 modules.py:654 INFO Result for existence check of numba/0.58.1-GCCcore-12.3.0 module: False == 2024-03-25 18:28:26,965 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.58.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2023a'} == 2024-03-25 18:28:26,966 modules.py:626 INFO Checking whether Pysam/0.22.0-foss-2023a exists... == 2024-03-25 18:28:26,966 modules.py:647 INFO Module Pysam/0.22.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,966 modules.py:654 INFO Result for existence check of Pysam/0.22.0-foss-2023a module: False == 2024-03-25 18:28:26,966 modules.py:626 INFO Checking whether Pysam/0.22.0-gompi-2023a exists... == 2024-03-25 18:28:26,966 modules.py:647 INFO Module Pysam/0.22.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,967 modules.py:654 INFO Result for existence check of Pysam/0.22.0-gompi-2023a module: False == 2024-03-25 18:28:26,967 modules.py:626 INFO Checking whether Pysam/0.22.0-gfbf-2023a exists... == 2024-03-25 18:28:26,967 modules.py:647 INFO Module Pysam/0.22.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,967 modules.py:654 INFO Result for existence check of Pysam/0.22.0-gfbf-2023a module: False == 2024-03-25 18:28:26,967 modules.py:626 INFO Checking whether Pysam/0.22.0-GCCcore-12.3.0 exists... == 2024-03-25 18:28:26,967 modules.py:647 INFO Module Pysam/0.22.0-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,968 modules.py:654 INFO Result for existence check of Pysam/0.22.0-GCCcore-12.3.0 module: False == 2024-03-25 18:28:26,968 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,968 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,968 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,968 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Pysam', 'version': '0.22.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '12.3.0'} == 2024-03-25 18:28:26,969 modules.py:626 INFO Checking whether PyYAML/6.0-foss-2023a exists... == 2024-03-25 18:28:26,969 modules.py:647 INFO Module PyYAML/6.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,969 modules.py:654 INFO Result for existence check of PyYAML/6.0-foss-2023a module: False == 2024-03-25 18:28:26,969 modules.py:626 INFO Checking whether PyYAML/6.0-gompi-2023a exists... == 2024-03-25 18:28:26,970 modules.py:647 INFO Module PyYAML/6.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,970 modules.py:654 INFO Result for existence check of PyYAML/6.0-gompi-2023a module: False == 2024-03-25 18:28:26,970 modules.py:626 INFO Checking whether PyYAML/6.0-gfbf-2023a exists... == 2024-03-25 18:28:26,970 modules.py:647 INFO Module PyYAML/6.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,970 modules.py:654 INFO Result for existence check of PyYAML/6.0-gfbf-2023a module: False == 2024-03-25 18:28:26,970 modules.py:626 INFO Checking whether PyYAML/6.0-GCC-12.3.0 exists... == 2024-03-25 18:28:26,970 modules.py:647 INFO Module PyYAML/6.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,971 modules.py:654 INFO Result for existence check of PyYAML/6.0-GCC-12.3.0 module: False == 2024-03-25 18:28:26,971 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,971 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,971 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,971 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,971 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyYAML', 'version': '6.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:26,972 modules.py:626 INFO Checking whether typing-extensions/4.9.0-foss-2023a exists... == 2024-03-25 18:28:26,972 modules.py:647 INFO Module typing-extensions/4.9.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,973 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-foss-2023a module: False == 2024-03-25 18:28:26,973 modules.py:626 INFO Checking whether typing-extensions/4.9.0-gompi-2023a exists... == 2024-03-25 18:28:26,973 modules.py:647 INFO Module typing-extensions/4.9.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,973 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-gompi-2023a module: False == 2024-03-25 18:28:26,973 modules.py:626 INFO Checking whether typing-extensions/4.9.0-gfbf-2023a exists... == 2024-03-25 18:28:26,973 modules.py:647 INFO Module typing-extensions/4.9.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,973 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-gfbf-2023a module: False == 2024-03-25 18:28:26,974 modules.py:626 INFO Checking whether typing-extensions/4.9.0-GCC-12.3.0 exists... == 2024-03-25 18:28:26,974 modules.py:647 INFO Module typing-extensions/4.9.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,974 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-GCC-12.3.0 module: False == 2024-03-25 18:28:26,974 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,974 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,974 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,974 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,975 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'typing-extensions', 'version': '4.9.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:26,976 modules.py:626 INFO Checking whether tqdm/4.66.1-foss-2023a exists... == 2024-03-25 18:28:26,976 modules.py:647 INFO Module tqdm/4.66.1-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,976 modules.py:654 INFO Result for existence check of tqdm/4.66.1-foss-2023a module: False == 2024-03-25 18:28:26,976 modules.py:626 INFO Checking whether tqdm/4.66.1-gompi-2023a exists... == 2024-03-25 18:28:26,976 modules.py:647 INFO Module tqdm/4.66.1-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,976 modules.py:654 INFO Result for existence check of tqdm/4.66.1-gompi-2023a module: False == 2024-03-25 18:28:26,976 modules.py:626 INFO Checking whether tqdm/4.66.1-gfbf-2023a exists... == 2024-03-25 18:28:26,977 modules.py:647 INFO Module tqdm/4.66.1-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,977 modules.py:654 INFO Result for existence check of tqdm/4.66.1-gfbf-2023a module: False == 2024-03-25 18:28:26,977 modules.py:626 INFO Checking whether tqdm/4.66.1-GCC-12.3.0 exists... == 2024-03-25 18:28:26,977 modules.py:647 INFO Module tqdm/4.66.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,977 modules.py:654 INFO Result for existence check of tqdm/4.66.1-GCC-12.3.0 module: False == 2024-03-25 18:28:26,977 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,977 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,978 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,978 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,978 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'tqdm', 'version': '4.66.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:26,979 modules.py:626 INFO Checking whether hatchling/1.18.0-foss-2023a exists... == 2024-03-25 18:28:26,979 modules.py:647 INFO Module hatchling/1.18.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,979 modules.py:654 INFO Result for existence check of hatchling/1.18.0-foss-2023a module: False == 2024-03-25 18:28:26,979 modules.py:626 INFO Checking whether hatchling/1.18.0-gompi-2023a exists... == 2024-03-25 18:28:26,979 modules.py:647 INFO Module hatchling/1.18.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,980 modules.py:654 INFO Result for existence check of hatchling/1.18.0-gompi-2023a module: False == 2024-03-25 18:28:26,980 modules.py:626 INFO Checking whether hatchling/1.18.0-gfbf-2023a exists... == 2024-03-25 18:28:26,980 modules.py:647 INFO Module hatchling/1.18.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,980 modules.py:654 INFO Result for existence check of hatchling/1.18.0-gfbf-2023a module: False == 2024-03-25 18:28:26,980 modules.py:626 INFO Checking whether hatchling/1.18.0-GCC-12.3.0 exists... == 2024-03-25 18:28:26,980 modules.py:647 INFO Module hatchling/1.18.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,980 modules.py:654 INFO Result for existence check of hatchling/1.18.0-GCC-12.3.0 module: False == 2024-03-25 18:28:26,981 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,981 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,981 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,981 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,981 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'hatchling', 'version': '1.18.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:26,983 pythonpackage.py:408 INFO Using default value for expected module name (lowercase software name): 'ngs_tools' == 2024-03-25 18:28:26,983 pythonpackage.py:441 INFO Using pip with --no-deps option == 2024-03-25 18:28:26,983 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc47063/eb-78i3uhl1 (previous value: '/tmp/vsc47063/eb-78i3uhl1') == 2024-03-25 18:28:26,983 pythonpackage.py:458 INFO Using /tmp/vsc47063/eb-78i3uhl1 as pip cache directory == 2024-03-25 18:28:26,983 pythonpackage.py:473 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command == 2024-03-25 18:28:26,985 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... == 2024-03-25 18:28:26,985 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') == 2024-03-25 18:28:26,985 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') == 2024-03-25 18:28:26,985 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') == 2024-03-25 18:28:26,986 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') == 2024-03-25 18:28:26,986 modules.py:299 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it == 2024-03-25 18:28:26,986 modules.py:455 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all == 2024-03-25 18:28:26,987 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] == 2024-03-25 18:28:26,987 easyconfig.py:1908 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle == 2024-03-25 18:28:26,987 easyconfig.py:1955 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'Cassiopeia') == 2024-03-25 18:28:26,988 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: easyblock = 'PythonBundle' name = 'Cassiopeia' version = '2.0.0' homepage = 'https://github.com/YosefLab/Cassiopeia' description = """A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction.""" toolchain = {'name': 'foss', 'version': '2023a'} # "Biopython>=1.71", OK # "bokeh>=0.12.15", OK # "cython>=0.29.2", OK pybundle # "ete3>=3.1.1", OK # "hits", OK exts # "itolapi", OK exts # "matplotlib>=2.2.2", OK # "nbconvert>=5.4.0", OK exts # "nbformat>=4.4.0", Ok exts # "networkx>=2.5", OK # "ngs-tools>=1.5.3", OK exts # "numba>=0.51.0", OK # "numpy>=1.19.5", OK # "pandas>=1.1.4", OK # "pysam>=0.14.1", OK # "python-Levenshtein", OK exts # "PyYAML>=3.12", OK # "scipy>=1.2.0", OK # "typing-extensions>=3.7.4", OK # "tqdm>=4", OK builddependencies = [ ('CMake', '3.26.3'), ] dependencies = [ ('Python', '3.11.3'), ('Python-bundle-PyPI', '2023.06'), ('Biopython', '1.83'), ('scikit-build', '0.17.6'), ('bokeh', '3.2.2'), # ('ETE', '3.1.3'), ('matplotlib', '3.7.2'), ('networkx', '3.1'), ('numba', '0.58.1'), ('Pysam', '0.22.0'), ('PyYAML', '6.0'), ('typing-extensions', '4.9.0'), ('tqdm', '4.66.1'), ('hatchling', '1.18.0'), ] use_pip = True sanity_pip_check = True # cleo 2.0.1 has requirement rapidfuzz<3.0.0,>=2.2.0, but you have rapidfuzz 3.7.0. # levenshtein 0.25.0 has requirement rapidfuzz<4.0.0,>=3.1.0, but you have rapidfuzz 2.15.1. exts_list = [ ('hatch_nodejs_version', '0.3.2', { 'checksums': ['8a7828d817b71e50bbbbb01c9bfc0b329657b7900c56846489b9c958de15b54c'], }), ('ngs-tools', '1.8.5', { 'checksums': ['380e236a101c5b1ac3c0fcdbcc908a210179b6ef2a93fbea9f4eb0ec2edc1de0'], }), ('nbformat', '5.10.3', { 'checksums': ['60ed5e910ef7c6264b87d644f276b1b49e24011930deef54605188ddeb211685'], }), ('nbconvert', '7.16.3', { 'checksums': ['a6733b78ce3d47c3f85e504998495b07e6ea9cf9bf6ec1c98dda63ec6ad19142'], }), ('itolapi', '4.1.4', { 'checksums': ['68e87ba51d209da556b0e373b3b0456b644a1a732c193fedbd7785ff37b6a2cb'], }), ('hits', '0.4.0', { 'checksums': ['743bfc1b56ab8fcf9fefacfcad4c1f23e9bafec1b42225709dbe097c8e669383'], }), ('Levenshtein', '0.22.0', { 'modulename': False, 'checksums': ['86d285d770551cb648d4fcfe5243449a479e694e56b65272dc6cbda879012051'], }), ('python-Levenshtein', '0.22.0', { 'modulename': 'Levenshtein', 'checksums': ['6f8e2216fbd4610ccfa1bab2e0052fb23de34c2333c192de08150eeb99717702'], }), (name, version, { # 'test_script': 'make test', 'source_urls': ['https://github.com/YosefLab/Cassiopeia/archive/'], 'sources': [{'download_filename': '%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], 'checksums': ['28ae7495152683f5733222255056a1e7b2f7a51e1cee2f23f0d9f8ae5f4c3742'], }), ] sanity_check_commands = [ "cd %(builddir)s/Cassiopeia/Cassiopeia-* && make test", # failing with: ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ] moduleclass = 'bio' == 2024-03-25 18:28:26,988 parser.py:139 INFO Type checking of easyconfig parameter values passed! == 2024-03-25 18:28:26,988 easyconfig.py:686 INFO setting easyconfig parameter builddependencies: value [('CMake', '3.26.3')] (type: ) == 2024-03-25 18:28:26,988 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.11.3'), ('Python-bundle-PyPI', '2023.06'), ('Biopython', '1.83'), ('scikit-build', '0.17.6'), ('bokeh', '3.2.2'), ('matplotlib', '3.7.2'), ('networkx', '3.1'), ('numba', '0.58.1'), ('Pysam', '0.22.0'), ('PyYAML', '6.0'), ('typing-extensions', '4.9.0'), ('tqdm', '4.66.1'), ('hatchling', '1.18.0')] (type: ) == 2024-03-25 18:28:26,988 easyconfig.py:686 INFO setting easyconfig parameter description: value A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction. (type: ) == 2024-03-25 18:28:26,989 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) == 2024-03-25 18:28:26,989 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('hatch_nodejs_version', '0.3.2', {'checksums': ['8a7828d817b71e50bbbbb01c9bfc0b329657b7900c56846489b9c958de15b54c']}), ('ngs-tools', '1.8.5', {'checksums': ['380e236a101c5b1ac3c0fcdbcc908a210179b6ef2a93fbea9f4eb0ec2edc1de0']}), ('nbformat', '5.10.3', {'checksums': ['60ed5e910ef7c6264b87d644f276b1b49e24011930deef54605188ddeb211685']}), ('nbconvert', '7.16.3', {'checksums': ['a6733b78ce3d47c3f85e504998495b07e6ea9cf9bf6ec1c98dda63ec6ad19142']}), ('itolapi', '4.1.4', {'checksums': ['68e87ba51d209da556b0e373b3b0456b644a1a732c193fedbd7785ff37b6a2cb']}), ('hits', '0.4.0', {'checksums': ['743bfc1b56ab8fcf9fefacfcad4c1f23e9bafec1b42225709dbe097c8e669383']}), ('Levenshtein', '0.22.0', {'modulename': False, 'checksums': ['86d285d770551cb648d4fcfe5243449a479e694e56b65272dc6cbda879012051']}), ('python-Levenshtein', '0.22.0', {'modulename': 'Levenshtein', 'checksums': ['6f8e2216fbd4610ccfa1bab2e0052fb23de34c2333c192de08150eeb99717702']}), ('Cassiopeia', '2.0.0', {'source_urls': ['https://github.com/YosefLab/Cassiopeia/archive/'], 'sources': [{'download_filename': '%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], 'checksums': ['28ae7495152683f5733222255056a1e7b2f7a51e1cee2f23f0d9f8ae5f4c3742']})] (type: ) == 2024-03-25 18:28:26,989 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/YosefLab/Cassiopeia (type: ) == 2024-03-25 18:28:26,989 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value bio (type: ) == 2024-03-25 18:28:26,989 easyconfig.py:686 INFO setting easyconfig parameter name: value Cassiopeia (type: ) == 2024-03-25 18:28:26,989 easyconfig.py:686 INFO setting easyconfig parameter sanity_check_commands: value ['cd %(builddir)s/Cassiopeia/Cassiopeia-* && make test'] (type: ) == 2024-03-25 18:28:26,989 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) == 2024-03-25 18:28:26,989 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2023a'} (type: ) == 2024-03-25 18:28:26,989 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) == 2024-03-25 18:28:26,989 easyconfig.py:686 INFO setting easyconfig parameter version: value 2.0.0 (type: ) == 2024-03-25 18:28:26,989 easyconfig.py:747 INFO Parsing dependency specifications... == 2024-03-25 18:28:26,989 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:28:26,990 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' == 2024-03-25 18:28:26,990 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) == 2024-03-25 18:28:26,991 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='cassiopeia', github_account='cassiopeia', mpi_cmd_prefix='mpirun -n 1', name='Cassiopeia', nameletter='C', nameletterlower='c', namelower='cassiopeia', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.3', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='2.0.0', version_major='2', version_major_minor='2.0', version_minor='0', versionprefix='', versionsuffix='' == 2024-03-25 18:28:26,992 modules.py:626 INFO Checking whether CMake/3.26.3-foss-2023a exists... == 2024-03-25 18:28:26,992 modules.py:647 INFO Module CMake/3.26.3-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,992 modules.py:654 INFO Result for existence check of CMake/3.26.3-foss-2023a module: False == 2024-03-25 18:28:26,992 modules.py:626 INFO Checking whether CMake/3.26.3-gompi-2023a exists... == 2024-03-25 18:28:26,992 modules.py:647 INFO Module CMake/3.26.3-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,992 modules.py:654 INFO Result for existence check of CMake/3.26.3-gompi-2023a module: False == 2024-03-25 18:28:26,993 modules.py:626 INFO Checking whether CMake/3.26.3-gfbf-2023a exists... == 2024-03-25 18:28:26,993 modules.py:647 INFO Module CMake/3.26.3-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,993 modules.py:654 INFO Result for existence check of CMake/3.26.3-gfbf-2023a module: False == 2024-03-25 18:28:26,993 modules.py:626 INFO Checking whether CMake/3.26.3-GCC-12.3.0 exists... == 2024-03-25 18:28:26,993 modules.py:647 INFO Module CMake/3.26.3-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,993 modules.py:654 INFO Result for existence check of CMake/3.26.3-GCC-12.3.0 module: False == 2024-03-25 18:28:26,993 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,994 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,994 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,994 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,994 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'CMake', 'version': '3.26.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:26,995 modules.py:626 INFO Checking whether Python/3.11.3-foss-2023a exists... == 2024-03-25 18:28:26,995 modules.py:647 INFO Module Python/3.11.3-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,995 modules.py:654 INFO Result for existence check of Python/3.11.3-foss-2023a module: False == 2024-03-25 18:28:26,996 modules.py:626 INFO Checking whether Python/3.11.3-gompi-2023a exists... == 2024-03-25 18:28:26,996 modules.py:647 INFO Module Python/3.11.3-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,996 modules.py:654 INFO Result for existence check of Python/3.11.3-gompi-2023a module: False == 2024-03-25 18:28:26,996 modules.py:626 INFO Checking whether Python/3.11.3-gfbf-2023a exists... == 2024-03-25 18:28:26,996 modules.py:647 INFO Module Python/3.11.3-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,996 modules.py:654 INFO Result for existence check of Python/3.11.3-gfbf-2023a module: False == 2024-03-25 18:28:26,997 modules.py:626 INFO Checking whether Python/3.11.3-GCC-12.3.0 exists... == 2024-03-25 18:28:26,997 modules.py:647 INFO Module Python/3.11.3-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,997 modules.py:654 INFO Result for existence check of Python/3.11.3-GCC-12.3.0 module: False == 2024-03-25 18:28:26,997 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,997 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,997 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,997 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:26,997 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.11.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:26,998 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-foss-2023a exists... == 2024-03-25 18:28:26,999 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,999 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-foss-2023a module: False == 2024-03-25 18:28:26,999 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-gompi-2023a exists... == 2024-03-25 18:28:26,999 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:26,999 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-gompi-2023a module: False == 2024-03-25 18:28:26,999 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-gfbf-2023a exists... == 2024-03-25 18:28:26,999 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,000 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-gfbf-2023a module: False == 2024-03-25 18:28:27,000 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-GCC-12.3.0 exists... == 2024-03-25 18:28:27,000 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,000 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-GCC-12.3.0 module: False == 2024-03-25 18:28:27,000 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,000 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,000 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,001 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,001 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python-bundle-PyPI', 'version': '2023.06', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,002 modules.py:626 INFO Checking whether Biopython/1.83-gompi-2023a exists... == 2024-03-25 18:28:27,002 modules.py:647 INFO Module Biopython/1.83-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,002 modules.py:654 INFO Result for existence check of Biopython/1.83-gompi-2023a module: False == 2024-03-25 18:28:27,002 modules.py:626 INFO Checking whether Biopython/1.83-gfbf-2023a exists... == 2024-03-25 18:28:27,002 modules.py:647 INFO Module Biopython/1.83-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,003 modules.py:654 INFO Result for existence check of Biopython/1.83-gfbf-2023a module: False == 2024-03-25 18:28:27,003 modules.py:626 INFO Checking whether Biopython/1.83-GCC-12.3.0 exists... == 2024-03-25 18:28:27,003 modules.py:647 INFO Module Biopython/1.83-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,003 modules.py:654 INFO Result for existence check of Biopython/1.83-GCC-12.3.0 module: False == 2024-03-25 18:28:27,003 modules.py:626 INFO Checking whether Biopython/1.83-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,003 modules.py:647 INFO Module Biopython/1.83-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,003 modules.py:654 INFO Result for existence check of Biopython/1.83-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,003 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Biopython', 'version': '1.83', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2023a'} == 2024-03-25 18:28:27,005 modules.py:626 INFO Checking whether scikit-build/0.17.6-foss-2023a exists... == 2024-03-25 18:28:27,005 modules.py:647 INFO Module scikit-build/0.17.6-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,005 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-foss-2023a module: False == 2024-03-25 18:28:27,005 modules.py:626 INFO Checking whether scikit-build/0.17.6-gompi-2023a exists... == 2024-03-25 18:28:27,005 modules.py:647 INFO Module scikit-build/0.17.6-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,005 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-gompi-2023a module: False == 2024-03-25 18:28:27,005 modules.py:626 INFO Checking whether scikit-build/0.17.6-gfbf-2023a exists... == 2024-03-25 18:28:27,006 modules.py:647 INFO Module scikit-build/0.17.6-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,006 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-gfbf-2023a module: False == 2024-03-25 18:28:27,006 modules.py:626 INFO Checking whether scikit-build/0.17.6-GCC-12.3.0 exists... == 2024-03-25 18:28:27,006 modules.py:647 INFO Module scikit-build/0.17.6-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,006 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-GCC-12.3.0 module: False == 2024-03-25 18:28:27,006 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,006 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,007 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,007 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,007 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-build', 'version': '0.17.6', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,008 modules.py:626 INFO Checking whether bokeh/3.2.2-gompi-2023a exists... == 2024-03-25 18:28:27,008 modules.py:647 INFO Module bokeh/3.2.2-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,008 modules.py:654 INFO Result for existence check of bokeh/3.2.2-gompi-2023a module: False == 2024-03-25 18:28:27,008 modules.py:626 INFO Checking whether bokeh/3.2.2-gfbf-2023a exists... == 2024-03-25 18:28:27,008 modules.py:647 INFO Module bokeh/3.2.2-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,009 modules.py:654 INFO Result for existence check of bokeh/3.2.2-gfbf-2023a module: False == 2024-03-25 18:28:27,009 modules.py:626 INFO Checking whether bokeh/3.2.2-GCC-12.3.0 exists... == 2024-03-25 18:28:27,009 modules.py:647 INFO Module bokeh/3.2.2-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,009 modules.py:654 INFO Result for existence check of bokeh/3.2.2-GCC-12.3.0 module: False == 2024-03-25 18:28:27,009 modules.py:626 INFO Checking whether bokeh/3.2.2-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,009 modules.py:647 INFO Module bokeh/3.2.2-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,010 modules.py:654 INFO Result for existence check of bokeh/3.2.2-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,010 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'bokeh', 'version': '3.2.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2023a'} == 2024-03-25 18:28:27,011 modules.py:626 INFO Checking whether matplotlib/3.7.2-foss-2023a exists... == 2024-03-25 18:28:27,011 modules.py:647 INFO Module matplotlib/3.7.2-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,011 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-foss-2023a module: False == 2024-03-25 18:28:27,011 modules.py:626 INFO Checking whether matplotlib/3.7.2-gompi-2023a exists... == 2024-03-25 18:28:27,011 modules.py:647 INFO Module matplotlib/3.7.2-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,011 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-gompi-2023a module: False == 2024-03-25 18:28:27,012 modules.py:626 INFO Checking whether matplotlib/3.7.2-GCC-12.3.0 exists... == 2024-03-25 18:28:27,012 modules.py:647 INFO Module matplotlib/3.7.2-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,012 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-GCC-12.3.0 module: False == 2024-03-25 18:28:27,012 modules.py:626 INFO Checking whether matplotlib/3.7.2-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,012 modules.py:647 INFO Module matplotlib/3.7.2-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,012 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,012 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,013 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,013 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'matplotlib', 'version': '3.7.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'gfbf', 'version': '2023a'} == 2024-03-25 18:28:27,014 modules.py:626 INFO Checking whether networkx/3.1-foss-2023a exists... == 2024-03-25 18:28:27,014 modules.py:647 INFO Module networkx/3.1-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,014 modules.py:654 INFO Result for existence check of networkx/3.1-foss-2023a module: False == 2024-03-25 18:28:27,014 modules.py:626 INFO Checking whether networkx/3.1-gompi-2023a exists... == 2024-03-25 18:28:27,014 modules.py:647 INFO Module networkx/3.1-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,015 modules.py:654 INFO Result for existence check of networkx/3.1-gompi-2023a module: False == 2024-03-25 18:28:27,015 modules.py:626 INFO Checking whether networkx/3.1-GCC-12.3.0 exists... == 2024-03-25 18:28:27,015 modules.py:647 INFO Module networkx/3.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,015 modules.py:654 INFO Result for existence check of networkx/3.1-GCC-12.3.0 module: False == 2024-03-25 18:28:27,015 modules.py:626 INFO Checking whether networkx/3.1-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,015 modules.py:647 INFO Module networkx/3.1-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,015 modules.py:654 INFO Result for existence check of networkx/3.1-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,016 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,016 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,016 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '3.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'gfbf', 'version': '2023a'} == 2024-03-25 18:28:27,017 modules.py:626 INFO Checking whether numba/0.58.1-gompi-2023a exists... == 2024-03-25 18:28:27,017 modules.py:647 INFO Module numba/0.58.1-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,017 modules.py:654 INFO Result for existence check of numba/0.58.1-gompi-2023a module: False == 2024-03-25 18:28:27,017 modules.py:626 INFO Checking whether numba/0.58.1-gfbf-2023a exists... == 2024-03-25 18:28:27,017 modules.py:647 INFO Module numba/0.58.1-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,018 modules.py:654 INFO Result for existence check of numba/0.58.1-gfbf-2023a module: False == 2024-03-25 18:28:27,018 modules.py:626 INFO Checking whether numba/0.58.1-GCC-12.3.0 exists... == 2024-03-25 18:28:27,018 modules.py:647 INFO Module numba/0.58.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,018 modules.py:654 INFO Result for existence check of numba/0.58.1-GCC-12.3.0 module: False == 2024-03-25 18:28:27,018 modules.py:626 INFO Checking whether numba/0.58.1-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,018 modules.py:647 INFO Module numba/0.58.1-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,019 modules.py:654 INFO Result for existence check of numba/0.58.1-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,019 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.58.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2023a'} == 2024-03-25 18:28:27,020 modules.py:626 INFO Checking whether Pysam/0.22.0-foss-2023a exists... == 2024-03-25 18:28:27,020 modules.py:647 INFO Module Pysam/0.22.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,020 modules.py:654 INFO Result for existence check of Pysam/0.22.0-foss-2023a module: False == 2024-03-25 18:28:27,020 modules.py:626 INFO Checking whether Pysam/0.22.0-gompi-2023a exists... == 2024-03-25 18:28:27,020 modules.py:647 INFO Module Pysam/0.22.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,020 modules.py:654 INFO Result for existence check of Pysam/0.22.0-gompi-2023a module: False == 2024-03-25 18:28:27,021 modules.py:626 INFO Checking whether Pysam/0.22.0-gfbf-2023a exists... == 2024-03-25 18:28:27,021 modules.py:647 INFO Module Pysam/0.22.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,021 modules.py:654 INFO Result for existence check of Pysam/0.22.0-gfbf-2023a module: False == 2024-03-25 18:28:27,021 modules.py:626 INFO Checking whether Pysam/0.22.0-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,021 modules.py:647 INFO Module Pysam/0.22.0-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,021 modules.py:654 INFO Result for existence check of Pysam/0.22.0-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,021 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,022 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,022 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,022 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Pysam', 'version': '0.22.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '12.3.0'} == 2024-03-25 18:28:27,023 modules.py:626 INFO Checking whether PyYAML/6.0-foss-2023a exists... == 2024-03-25 18:28:27,023 modules.py:647 INFO Module PyYAML/6.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,023 modules.py:654 INFO Result for existence check of PyYAML/6.0-foss-2023a module: False == 2024-03-25 18:28:27,023 modules.py:626 INFO Checking whether PyYAML/6.0-gompi-2023a exists... == 2024-03-25 18:28:27,023 modules.py:647 INFO Module PyYAML/6.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,024 modules.py:654 INFO Result for existence check of PyYAML/6.0-gompi-2023a module: False == 2024-03-25 18:28:27,024 modules.py:626 INFO Checking whether PyYAML/6.0-gfbf-2023a exists... == 2024-03-25 18:28:27,024 modules.py:647 INFO Module PyYAML/6.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,024 modules.py:654 INFO Result for existence check of PyYAML/6.0-gfbf-2023a module: False == 2024-03-25 18:28:27,024 modules.py:626 INFO Checking whether PyYAML/6.0-GCC-12.3.0 exists... == 2024-03-25 18:28:27,024 modules.py:647 INFO Module PyYAML/6.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,024 modules.py:654 INFO Result for existence check of PyYAML/6.0-GCC-12.3.0 module: False == 2024-03-25 18:28:27,025 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,025 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,025 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,025 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,025 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyYAML', 'version': '6.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,026 modules.py:626 INFO Checking whether typing-extensions/4.9.0-foss-2023a exists... == 2024-03-25 18:28:27,026 modules.py:647 INFO Module typing-extensions/4.9.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,026 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-foss-2023a module: False == 2024-03-25 18:28:27,027 modules.py:626 INFO Checking whether typing-extensions/4.9.0-gompi-2023a exists... == 2024-03-25 18:28:27,027 modules.py:647 INFO Module typing-extensions/4.9.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,027 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-gompi-2023a module: False == 2024-03-25 18:28:27,027 modules.py:626 INFO Checking whether typing-extensions/4.9.0-gfbf-2023a exists... == 2024-03-25 18:28:27,027 modules.py:647 INFO Module typing-extensions/4.9.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,027 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-gfbf-2023a module: False == 2024-03-25 18:28:27,027 modules.py:626 INFO Checking whether typing-extensions/4.9.0-GCC-12.3.0 exists... == 2024-03-25 18:28:27,028 modules.py:647 INFO Module typing-extensions/4.9.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,028 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-GCC-12.3.0 module: False == 2024-03-25 18:28:27,028 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,028 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,028 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,028 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,028 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'typing-extensions', 'version': '4.9.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,029 modules.py:626 INFO Checking whether tqdm/4.66.1-foss-2023a exists... == 2024-03-25 18:28:27,030 modules.py:647 INFO Module tqdm/4.66.1-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,030 modules.py:654 INFO Result for existence check of tqdm/4.66.1-foss-2023a module: False == 2024-03-25 18:28:27,030 modules.py:626 INFO Checking whether tqdm/4.66.1-gompi-2023a exists... == 2024-03-25 18:28:27,030 modules.py:647 INFO Module tqdm/4.66.1-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,030 modules.py:654 INFO Result for existence check of tqdm/4.66.1-gompi-2023a module: False == 2024-03-25 18:28:27,030 modules.py:626 INFO Checking whether tqdm/4.66.1-gfbf-2023a exists... == 2024-03-25 18:28:27,030 modules.py:647 INFO Module tqdm/4.66.1-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,031 modules.py:654 INFO Result for existence check of tqdm/4.66.1-gfbf-2023a module: False == 2024-03-25 18:28:27,031 modules.py:626 INFO Checking whether tqdm/4.66.1-GCC-12.3.0 exists... == 2024-03-25 18:28:27,031 modules.py:647 INFO Module tqdm/4.66.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,031 modules.py:654 INFO Result for existence check of tqdm/4.66.1-GCC-12.3.0 module: False == 2024-03-25 18:28:27,031 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,031 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,031 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,032 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,032 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'tqdm', 'version': '4.66.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,033 modules.py:626 INFO Checking whether hatchling/1.18.0-foss-2023a exists... == 2024-03-25 18:28:27,033 modules.py:647 INFO Module hatchling/1.18.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,033 modules.py:654 INFO Result for existence check of hatchling/1.18.0-foss-2023a module: False == 2024-03-25 18:28:27,033 modules.py:626 INFO Checking whether hatchling/1.18.0-gompi-2023a exists... == 2024-03-25 18:28:27,033 modules.py:647 INFO Module hatchling/1.18.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,034 modules.py:654 INFO Result for existence check of hatchling/1.18.0-gompi-2023a module: False == 2024-03-25 18:28:27,034 modules.py:626 INFO Checking whether hatchling/1.18.0-gfbf-2023a exists... == 2024-03-25 18:28:27,034 modules.py:647 INFO Module hatchling/1.18.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,034 modules.py:654 INFO Result for existence check of hatchling/1.18.0-gfbf-2023a module: False == 2024-03-25 18:28:27,034 modules.py:626 INFO Checking whether hatchling/1.18.0-GCC-12.3.0 exists... == 2024-03-25 18:28:27,034 modules.py:647 INFO Module hatchling/1.18.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,034 modules.py:654 INFO Result for existence check of hatchling/1.18.0-GCC-12.3.0 module: False == 2024-03-25 18:28:27,035 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,035 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,035 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,035 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,035 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'hatchling', 'version': '1.18.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,037 pythonpackage.py:408 INFO Using default value for expected module name (lowercase software name): 'nbformat' == 2024-03-25 18:28:27,037 pythonpackage.py:441 INFO Using pip with --no-deps option == 2024-03-25 18:28:27,037 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc47063/eb-78i3uhl1 (previous value: '/tmp/vsc47063/eb-78i3uhl1') == 2024-03-25 18:28:27,037 pythonpackage.py:458 INFO Using /tmp/vsc47063/eb-78i3uhl1 as pip cache directory == 2024-03-25 18:28:27,037 pythonpackage.py:473 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command == 2024-03-25 18:28:27,038 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... == 2024-03-25 18:28:27,039 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') == 2024-03-25 18:28:27,039 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') == 2024-03-25 18:28:27,039 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') == 2024-03-25 18:28:27,039 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') == 2024-03-25 18:28:27,040 modules.py:299 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it == 2024-03-25 18:28:27,040 modules.py:455 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all == 2024-03-25 18:28:27,040 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] == 2024-03-25 18:28:27,041 easyconfig.py:1908 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle == 2024-03-25 18:28:27,041 easyconfig.py:1955 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'Cassiopeia') == 2024-03-25 18:28:27,041 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: easyblock = 'PythonBundle' name = 'Cassiopeia' version = '2.0.0' homepage = 'https://github.com/YosefLab/Cassiopeia' description = """A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction.""" toolchain = {'name': 'foss', 'version': '2023a'} # "Biopython>=1.71", OK # "bokeh>=0.12.15", OK # "cython>=0.29.2", OK pybundle # "ete3>=3.1.1", OK # "hits", OK exts # "itolapi", OK exts # "matplotlib>=2.2.2", OK # "nbconvert>=5.4.0", OK exts # "nbformat>=4.4.0", Ok exts # "networkx>=2.5", OK # "ngs-tools>=1.5.3", OK exts # "numba>=0.51.0", OK # "numpy>=1.19.5", OK # "pandas>=1.1.4", OK # "pysam>=0.14.1", OK # "python-Levenshtein", OK exts # "PyYAML>=3.12", OK # "scipy>=1.2.0", OK # "typing-extensions>=3.7.4", OK # "tqdm>=4", OK builddependencies = [ ('CMake', '3.26.3'), ] dependencies = [ ('Python', '3.11.3'), ('Python-bundle-PyPI', '2023.06'), ('Biopython', '1.83'), ('scikit-build', '0.17.6'), ('bokeh', '3.2.2'), # ('ETE', '3.1.3'), ('matplotlib', '3.7.2'), ('networkx', '3.1'), ('numba', '0.58.1'), ('Pysam', '0.22.0'), ('PyYAML', '6.0'), ('typing-extensions', '4.9.0'), ('tqdm', '4.66.1'), ('hatchling', '1.18.0'), ] use_pip = True sanity_pip_check = True # cleo 2.0.1 has requirement rapidfuzz<3.0.0,>=2.2.0, but you have rapidfuzz 3.7.0. # levenshtein 0.25.0 has requirement rapidfuzz<4.0.0,>=3.1.0, but you have rapidfuzz 2.15.1. exts_list = [ ('hatch_nodejs_version', '0.3.2', { 'checksums': ['8a7828d817b71e50bbbbb01c9bfc0b329657b7900c56846489b9c958de15b54c'], }), ('ngs-tools', '1.8.5', { 'checksums': ['380e236a101c5b1ac3c0fcdbcc908a210179b6ef2a93fbea9f4eb0ec2edc1de0'], }), ('nbformat', '5.10.3', { 'checksums': ['60ed5e910ef7c6264b87d644f276b1b49e24011930deef54605188ddeb211685'], }), ('nbconvert', '7.16.3', { 'checksums': ['a6733b78ce3d47c3f85e504998495b07e6ea9cf9bf6ec1c98dda63ec6ad19142'], }), ('itolapi', '4.1.4', { 'checksums': ['68e87ba51d209da556b0e373b3b0456b644a1a732c193fedbd7785ff37b6a2cb'], }), ('hits', '0.4.0', { 'checksums': ['743bfc1b56ab8fcf9fefacfcad4c1f23e9bafec1b42225709dbe097c8e669383'], }), ('Levenshtein', '0.22.0', { 'modulename': False, 'checksums': ['86d285d770551cb648d4fcfe5243449a479e694e56b65272dc6cbda879012051'], }), ('python-Levenshtein', '0.22.0', { 'modulename': 'Levenshtein', 'checksums': ['6f8e2216fbd4610ccfa1bab2e0052fb23de34c2333c192de08150eeb99717702'], }), (name, version, { # 'test_script': 'make test', 'source_urls': ['https://github.com/YosefLab/Cassiopeia/archive/'], 'sources': [{'download_filename': '%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], 'checksums': ['28ae7495152683f5733222255056a1e7b2f7a51e1cee2f23f0d9f8ae5f4c3742'], }), ] sanity_check_commands = [ "cd %(builddir)s/Cassiopeia/Cassiopeia-* && make test", # failing with: ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ] moduleclass = 'bio' == 2024-03-25 18:28:27,042 parser.py:139 INFO Type checking of easyconfig parameter values passed! == 2024-03-25 18:28:27,042 easyconfig.py:686 INFO setting easyconfig parameter builddependencies: value [('CMake', '3.26.3')] (type: ) == 2024-03-25 18:28:27,042 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.11.3'), ('Python-bundle-PyPI', '2023.06'), ('Biopython', '1.83'), ('scikit-build', '0.17.6'), ('bokeh', '3.2.2'), ('matplotlib', '3.7.2'), ('networkx', '3.1'), ('numba', '0.58.1'), ('Pysam', '0.22.0'), ('PyYAML', '6.0'), ('typing-extensions', '4.9.0'), ('tqdm', '4.66.1'), ('hatchling', '1.18.0')] (type: ) == 2024-03-25 18:28:27,042 easyconfig.py:686 INFO setting easyconfig parameter description: value A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction. (type: ) == 2024-03-25 18:28:27,042 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) == 2024-03-25 18:28:27,042 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('hatch_nodejs_version', '0.3.2', {'checksums': ['8a7828d817b71e50bbbbb01c9bfc0b329657b7900c56846489b9c958de15b54c']}), ('ngs-tools', '1.8.5', {'checksums': ['380e236a101c5b1ac3c0fcdbcc908a210179b6ef2a93fbea9f4eb0ec2edc1de0']}), ('nbformat', '5.10.3', {'checksums': ['60ed5e910ef7c6264b87d644f276b1b49e24011930deef54605188ddeb211685']}), ('nbconvert', '7.16.3', {'checksums': ['a6733b78ce3d47c3f85e504998495b07e6ea9cf9bf6ec1c98dda63ec6ad19142']}), ('itolapi', '4.1.4', {'checksums': ['68e87ba51d209da556b0e373b3b0456b644a1a732c193fedbd7785ff37b6a2cb']}), ('hits', '0.4.0', {'checksums': ['743bfc1b56ab8fcf9fefacfcad4c1f23e9bafec1b42225709dbe097c8e669383']}), ('Levenshtein', '0.22.0', {'modulename': False, 'checksums': ['86d285d770551cb648d4fcfe5243449a479e694e56b65272dc6cbda879012051']}), ('python-Levenshtein', '0.22.0', {'modulename': 'Levenshtein', 'checksums': ['6f8e2216fbd4610ccfa1bab2e0052fb23de34c2333c192de08150eeb99717702']}), ('Cassiopeia', '2.0.0', {'source_urls': ['https://github.com/YosefLab/Cassiopeia/archive/'], 'sources': [{'download_filename': '%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], 'checksums': ['28ae7495152683f5733222255056a1e7b2f7a51e1cee2f23f0d9f8ae5f4c3742']})] (type: ) == 2024-03-25 18:28:27,042 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/YosefLab/Cassiopeia (type: ) == 2024-03-25 18:28:27,042 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value bio (type: ) == 2024-03-25 18:28:27,042 easyconfig.py:686 INFO setting easyconfig parameter name: value Cassiopeia (type: ) == 2024-03-25 18:28:27,042 easyconfig.py:686 INFO setting easyconfig parameter sanity_check_commands: value ['cd %(builddir)s/Cassiopeia/Cassiopeia-* && make test'] (type: ) == 2024-03-25 18:28:27,043 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) == 2024-03-25 18:28:27,043 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2023a'} (type: ) == 2024-03-25 18:28:27,043 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) == 2024-03-25 18:28:27,043 easyconfig.py:686 INFO setting easyconfig parameter version: value 2.0.0 (type: ) == 2024-03-25 18:28:27,043 easyconfig.py:747 INFO Parsing dependency specifications... == 2024-03-25 18:28:27,043 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:28:27,044 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' == 2024-03-25 18:28:27,044 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) == 2024-03-25 18:28:27,044 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='cassiopeia', github_account='cassiopeia', mpi_cmd_prefix='mpirun -n 1', name='Cassiopeia', nameletter='C', nameletterlower='c', namelower='cassiopeia', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.3', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='2.0.0', version_major='2', version_major_minor='2.0', version_minor='0', versionprefix='', versionsuffix='' == 2024-03-25 18:28:27,045 modules.py:626 INFO Checking whether CMake/3.26.3-foss-2023a exists... == 2024-03-25 18:28:27,045 modules.py:647 INFO Module CMake/3.26.3-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,046 modules.py:654 INFO Result for existence check of CMake/3.26.3-foss-2023a module: False == 2024-03-25 18:28:27,046 modules.py:626 INFO Checking whether CMake/3.26.3-gompi-2023a exists... == 2024-03-25 18:28:27,046 modules.py:647 INFO Module CMake/3.26.3-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,046 modules.py:654 INFO Result for existence check of CMake/3.26.3-gompi-2023a module: False == 2024-03-25 18:28:27,046 modules.py:626 INFO Checking whether CMake/3.26.3-gfbf-2023a exists... == 2024-03-25 18:28:27,046 modules.py:647 INFO Module CMake/3.26.3-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,046 modules.py:654 INFO Result for existence check of CMake/3.26.3-gfbf-2023a module: False == 2024-03-25 18:28:27,047 modules.py:626 INFO Checking whether CMake/3.26.3-GCC-12.3.0 exists... == 2024-03-25 18:28:27,047 modules.py:647 INFO Module CMake/3.26.3-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,047 modules.py:654 INFO Result for existence check of CMake/3.26.3-GCC-12.3.0 module: False == 2024-03-25 18:28:27,047 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,047 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,047 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,047 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,047 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'CMake', 'version': '3.26.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,049 modules.py:626 INFO Checking whether Python/3.11.3-foss-2023a exists... == 2024-03-25 18:28:27,049 modules.py:647 INFO Module Python/3.11.3-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,049 modules.py:654 INFO Result for existence check of Python/3.11.3-foss-2023a module: False == 2024-03-25 18:28:27,049 modules.py:626 INFO Checking whether Python/3.11.3-gompi-2023a exists... == 2024-03-25 18:28:27,049 modules.py:647 INFO Module Python/3.11.3-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,049 modules.py:654 INFO Result for existence check of Python/3.11.3-gompi-2023a module: False == 2024-03-25 18:28:27,050 modules.py:626 INFO Checking whether Python/3.11.3-gfbf-2023a exists... == 2024-03-25 18:28:27,050 modules.py:647 INFO Module Python/3.11.3-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,050 modules.py:654 INFO Result for existence check of Python/3.11.3-gfbf-2023a module: False == 2024-03-25 18:28:27,050 modules.py:626 INFO Checking whether Python/3.11.3-GCC-12.3.0 exists... == 2024-03-25 18:28:27,050 modules.py:647 INFO Module Python/3.11.3-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,050 modules.py:654 INFO Result for existence check of Python/3.11.3-GCC-12.3.0 module: False == 2024-03-25 18:28:27,051 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,051 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,051 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,051 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,051 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.11.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,052 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-foss-2023a exists... == 2024-03-25 18:28:27,052 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,052 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-foss-2023a module: False == 2024-03-25 18:28:27,052 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-gompi-2023a exists... == 2024-03-25 18:28:27,053 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,053 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-gompi-2023a module: False == 2024-03-25 18:28:27,053 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-gfbf-2023a exists... == 2024-03-25 18:28:27,053 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,053 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-gfbf-2023a module: False == 2024-03-25 18:28:27,053 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-GCC-12.3.0 exists... == 2024-03-25 18:28:27,053 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,054 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-GCC-12.3.0 module: False == 2024-03-25 18:28:27,054 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,054 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,054 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,054 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,054 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python-bundle-PyPI', 'version': '2023.06', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,055 modules.py:626 INFO Checking whether Biopython/1.83-gompi-2023a exists... == 2024-03-25 18:28:27,055 modules.py:647 INFO Module Biopython/1.83-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,056 modules.py:654 INFO Result for existence check of Biopython/1.83-gompi-2023a module: False == 2024-03-25 18:28:27,056 modules.py:626 INFO Checking whether Biopython/1.83-gfbf-2023a exists... == 2024-03-25 18:28:27,056 modules.py:647 INFO Module Biopython/1.83-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,056 modules.py:654 INFO Result for existence check of Biopython/1.83-gfbf-2023a module: False == 2024-03-25 18:28:27,056 modules.py:626 INFO Checking whether Biopython/1.83-GCC-12.3.0 exists... == 2024-03-25 18:28:27,056 modules.py:647 INFO Module Biopython/1.83-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,057 modules.py:654 INFO Result for existence check of Biopython/1.83-GCC-12.3.0 module: False == 2024-03-25 18:28:27,057 modules.py:626 INFO Checking whether Biopython/1.83-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,057 modules.py:647 INFO Module Biopython/1.83-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,057 modules.py:654 INFO Result for existence check of Biopython/1.83-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,057 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Biopython', 'version': '1.83', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2023a'} == 2024-03-25 18:28:27,058 modules.py:626 INFO Checking whether scikit-build/0.17.6-foss-2023a exists... == 2024-03-25 18:28:27,058 modules.py:647 INFO Module scikit-build/0.17.6-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,058 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-foss-2023a module: False == 2024-03-25 18:28:27,059 modules.py:626 INFO Checking whether scikit-build/0.17.6-gompi-2023a exists... == 2024-03-25 18:28:27,059 modules.py:647 INFO Module scikit-build/0.17.6-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,059 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-gompi-2023a module: False == 2024-03-25 18:28:27,059 modules.py:626 INFO Checking whether scikit-build/0.17.6-gfbf-2023a exists... == 2024-03-25 18:28:27,059 modules.py:647 INFO Module scikit-build/0.17.6-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,059 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-gfbf-2023a module: False == 2024-03-25 18:28:27,059 modules.py:626 INFO Checking whether scikit-build/0.17.6-GCC-12.3.0 exists... == 2024-03-25 18:28:27,060 modules.py:647 INFO Module scikit-build/0.17.6-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,060 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-GCC-12.3.0 module: False == 2024-03-25 18:28:27,060 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,060 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,060 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,060 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,060 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-build', 'version': '0.17.6', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,061 modules.py:626 INFO Checking whether bokeh/3.2.2-gompi-2023a exists... == 2024-03-25 18:28:27,062 modules.py:647 INFO Module bokeh/3.2.2-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,062 modules.py:654 INFO Result for existence check of bokeh/3.2.2-gompi-2023a module: False == 2024-03-25 18:28:27,062 modules.py:626 INFO Checking whether bokeh/3.2.2-gfbf-2023a exists... == 2024-03-25 18:28:27,062 modules.py:647 INFO Module bokeh/3.2.2-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,062 modules.py:654 INFO Result for existence check of bokeh/3.2.2-gfbf-2023a module: False == 2024-03-25 18:28:27,062 modules.py:626 INFO Checking whether bokeh/3.2.2-GCC-12.3.0 exists... == 2024-03-25 18:28:27,062 modules.py:647 INFO Module bokeh/3.2.2-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,063 modules.py:654 INFO Result for existence check of bokeh/3.2.2-GCC-12.3.0 module: False == 2024-03-25 18:28:27,063 modules.py:626 INFO Checking whether bokeh/3.2.2-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,063 modules.py:647 INFO Module bokeh/3.2.2-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,063 modules.py:654 INFO Result for existence check of bokeh/3.2.2-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,063 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'bokeh', 'version': '3.2.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2023a'} == 2024-03-25 18:28:27,064 modules.py:626 INFO Checking whether matplotlib/3.7.2-foss-2023a exists... == 2024-03-25 18:28:27,064 modules.py:647 INFO Module matplotlib/3.7.2-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,065 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-foss-2023a module: False == 2024-03-25 18:28:27,065 modules.py:626 INFO Checking whether matplotlib/3.7.2-gompi-2023a exists... == 2024-03-25 18:28:27,065 modules.py:647 INFO Module matplotlib/3.7.2-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,065 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-gompi-2023a module: False == 2024-03-25 18:28:27,065 modules.py:626 INFO Checking whether matplotlib/3.7.2-GCC-12.3.0 exists... == 2024-03-25 18:28:27,065 modules.py:647 INFO Module matplotlib/3.7.2-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,065 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-GCC-12.3.0 module: False == 2024-03-25 18:28:27,066 modules.py:626 INFO Checking whether matplotlib/3.7.2-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,066 modules.py:647 INFO Module matplotlib/3.7.2-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,066 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,066 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,066 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,066 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'matplotlib', 'version': '3.7.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'gfbf', 'version': '2023a'} == 2024-03-25 18:28:27,067 modules.py:626 INFO Checking whether networkx/3.1-foss-2023a exists... == 2024-03-25 18:28:27,067 modules.py:647 INFO Module networkx/3.1-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,068 modules.py:654 INFO Result for existence check of networkx/3.1-foss-2023a module: False == 2024-03-25 18:28:27,068 modules.py:626 INFO Checking whether networkx/3.1-gompi-2023a exists... == 2024-03-25 18:28:27,068 modules.py:647 INFO Module networkx/3.1-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,068 modules.py:654 INFO Result for existence check of networkx/3.1-gompi-2023a module: False == 2024-03-25 18:28:27,068 modules.py:626 INFO Checking whether networkx/3.1-GCC-12.3.0 exists... == 2024-03-25 18:28:27,068 modules.py:647 INFO Module networkx/3.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,069 modules.py:654 INFO Result for existence check of networkx/3.1-GCC-12.3.0 module: False == 2024-03-25 18:28:27,069 modules.py:626 INFO Checking whether networkx/3.1-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,069 modules.py:647 INFO Module networkx/3.1-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,069 modules.py:654 INFO Result for existence check of networkx/3.1-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,069 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,069 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,069 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '3.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'gfbf', 'version': '2023a'} == 2024-03-25 18:28:27,070 modules.py:626 INFO Checking whether numba/0.58.1-gompi-2023a exists... == 2024-03-25 18:28:27,071 modules.py:647 INFO Module numba/0.58.1-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,071 modules.py:654 INFO Result for existence check of numba/0.58.1-gompi-2023a module: False == 2024-03-25 18:28:27,071 modules.py:626 INFO Checking whether numba/0.58.1-gfbf-2023a exists... == 2024-03-25 18:28:27,071 modules.py:647 INFO Module numba/0.58.1-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,071 modules.py:654 INFO Result for existence check of numba/0.58.1-gfbf-2023a module: False == 2024-03-25 18:28:27,071 modules.py:626 INFO Checking whether numba/0.58.1-GCC-12.3.0 exists... == 2024-03-25 18:28:27,071 modules.py:647 INFO Module numba/0.58.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,072 modules.py:654 INFO Result for existence check of numba/0.58.1-GCC-12.3.0 module: False == 2024-03-25 18:28:27,072 modules.py:626 INFO Checking whether numba/0.58.1-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,072 modules.py:647 INFO Module numba/0.58.1-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,072 modules.py:654 INFO Result for existence check of numba/0.58.1-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,072 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.58.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2023a'} == 2024-03-25 18:28:27,073 modules.py:626 INFO Checking whether Pysam/0.22.0-foss-2023a exists... == 2024-03-25 18:28:27,073 modules.py:647 INFO Module Pysam/0.22.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,074 modules.py:654 INFO Result for existence check of Pysam/0.22.0-foss-2023a module: False == 2024-03-25 18:28:27,074 modules.py:626 INFO Checking whether Pysam/0.22.0-gompi-2023a exists... == 2024-03-25 18:28:27,074 modules.py:647 INFO Module Pysam/0.22.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,074 modules.py:654 INFO Result for existence check of Pysam/0.22.0-gompi-2023a module: False == 2024-03-25 18:28:27,074 modules.py:626 INFO Checking whether Pysam/0.22.0-gfbf-2023a exists... == 2024-03-25 18:28:27,074 modules.py:647 INFO Module Pysam/0.22.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,074 modules.py:654 INFO Result for existence check of Pysam/0.22.0-gfbf-2023a module: False == 2024-03-25 18:28:27,075 modules.py:626 INFO Checking whether Pysam/0.22.0-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,075 modules.py:647 INFO Module Pysam/0.22.0-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,075 modules.py:654 INFO Result for existence check of Pysam/0.22.0-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,075 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,075 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,075 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,075 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Pysam', 'version': '0.22.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '12.3.0'} == 2024-03-25 18:28:27,076 modules.py:626 INFO Checking whether PyYAML/6.0-foss-2023a exists... == 2024-03-25 18:28:27,076 modules.py:647 INFO Module PyYAML/6.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,077 modules.py:654 INFO Result for existence check of PyYAML/6.0-foss-2023a module: False == 2024-03-25 18:28:27,077 modules.py:626 INFO Checking whether PyYAML/6.0-gompi-2023a exists... == 2024-03-25 18:28:27,077 modules.py:647 INFO Module PyYAML/6.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,077 modules.py:654 INFO Result for existence check of PyYAML/6.0-gompi-2023a module: False == 2024-03-25 18:28:27,077 modules.py:626 INFO Checking whether PyYAML/6.0-gfbf-2023a exists... == 2024-03-25 18:28:27,077 modules.py:647 INFO Module PyYAML/6.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,078 modules.py:654 INFO Result for existence check of PyYAML/6.0-gfbf-2023a module: False == 2024-03-25 18:28:27,078 modules.py:626 INFO Checking whether PyYAML/6.0-GCC-12.3.0 exists... == 2024-03-25 18:28:27,078 modules.py:647 INFO Module PyYAML/6.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,078 modules.py:654 INFO Result for existence check of PyYAML/6.0-GCC-12.3.0 module: False == 2024-03-25 18:28:27,078 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,078 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,078 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,079 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,079 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyYAML', 'version': '6.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,080 modules.py:626 INFO Checking whether typing-extensions/4.9.0-foss-2023a exists... == 2024-03-25 18:28:27,080 modules.py:647 INFO Module typing-extensions/4.9.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,080 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-foss-2023a module: False == 2024-03-25 18:28:27,080 modules.py:626 INFO Checking whether typing-extensions/4.9.0-gompi-2023a exists... == 2024-03-25 18:28:27,080 modules.py:647 INFO Module typing-extensions/4.9.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,080 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-gompi-2023a module: False == 2024-03-25 18:28:27,081 modules.py:626 INFO Checking whether typing-extensions/4.9.0-gfbf-2023a exists... == 2024-03-25 18:28:27,081 modules.py:647 INFO Module typing-extensions/4.9.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,081 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-gfbf-2023a module: False == 2024-03-25 18:28:27,081 modules.py:626 INFO Checking whether typing-extensions/4.9.0-GCC-12.3.0 exists... == 2024-03-25 18:28:27,081 modules.py:647 INFO Module typing-extensions/4.9.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,081 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-GCC-12.3.0 module: False == 2024-03-25 18:28:27,081 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,082 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,082 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,082 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,082 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'typing-extensions', 'version': '4.9.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,083 modules.py:626 INFO Checking whether tqdm/4.66.1-foss-2023a exists... == 2024-03-25 18:28:27,083 modules.py:647 INFO Module tqdm/4.66.1-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,083 modules.py:654 INFO Result for existence check of tqdm/4.66.1-foss-2023a module: False == 2024-03-25 18:28:27,083 modules.py:626 INFO Checking whether tqdm/4.66.1-gompi-2023a exists... == 2024-03-25 18:28:27,084 modules.py:647 INFO Module tqdm/4.66.1-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,084 modules.py:654 INFO Result for existence check of tqdm/4.66.1-gompi-2023a module: False == 2024-03-25 18:28:27,084 modules.py:626 INFO Checking whether tqdm/4.66.1-gfbf-2023a exists... == 2024-03-25 18:28:27,084 modules.py:647 INFO Module tqdm/4.66.1-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,084 modules.py:654 INFO Result for existence check of tqdm/4.66.1-gfbf-2023a module: False == 2024-03-25 18:28:27,084 modules.py:626 INFO Checking whether tqdm/4.66.1-GCC-12.3.0 exists... == 2024-03-25 18:28:27,084 modules.py:647 INFO Module tqdm/4.66.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,085 modules.py:654 INFO Result for existence check of tqdm/4.66.1-GCC-12.3.0 module: False == 2024-03-25 18:28:27,085 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,085 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,085 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,085 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,085 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'tqdm', 'version': '4.66.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,086 modules.py:626 INFO Checking whether hatchling/1.18.0-foss-2023a exists... == 2024-03-25 18:28:27,086 modules.py:647 INFO Module hatchling/1.18.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,087 modules.py:654 INFO Result for existence check of hatchling/1.18.0-foss-2023a module: False == 2024-03-25 18:28:27,087 modules.py:626 INFO Checking whether hatchling/1.18.0-gompi-2023a exists... == 2024-03-25 18:28:27,087 modules.py:647 INFO Module hatchling/1.18.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,087 modules.py:654 INFO Result for existence check of hatchling/1.18.0-gompi-2023a module: False == 2024-03-25 18:28:27,087 modules.py:626 INFO Checking whether hatchling/1.18.0-gfbf-2023a exists... == 2024-03-25 18:28:27,087 modules.py:647 INFO Module hatchling/1.18.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,088 modules.py:654 INFO Result for existence check of hatchling/1.18.0-gfbf-2023a module: False == 2024-03-25 18:28:27,088 modules.py:626 INFO Checking whether hatchling/1.18.0-GCC-12.3.0 exists... == 2024-03-25 18:28:27,088 modules.py:647 INFO Module hatchling/1.18.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,088 modules.py:654 INFO Result for existence check of hatchling/1.18.0-GCC-12.3.0 module: False == 2024-03-25 18:28:27,088 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,088 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,088 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,088 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,089 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'hatchling', 'version': '1.18.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,090 pythonpackage.py:408 INFO Using default value for expected module name (lowercase software name): 'nbconvert' == 2024-03-25 18:28:27,090 pythonpackage.py:441 INFO Using pip with --no-deps option == 2024-03-25 18:28:27,090 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc47063/eb-78i3uhl1 (previous value: '/tmp/vsc47063/eb-78i3uhl1') == 2024-03-25 18:28:27,091 pythonpackage.py:458 INFO Using /tmp/vsc47063/eb-78i3uhl1 as pip cache directory == 2024-03-25 18:28:27,091 pythonpackage.py:473 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command == 2024-03-25 18:28:27,092 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... == 2024-03-25 18:28:27,092 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') == 2024-03-25 18:28:27,093 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') == 2024-03-25 18:28:27,093 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') == 2024-03-25 18:28:27,093 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') == 2024-03-25 18:28:27,093 modules.py:299 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it == 2024-03-25 18:28:27,093 modules.py:455 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all == 2024-03-25 18:28:27,094 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] == 2024-03-25 18:28:27,094 easyconfig.py:1908 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle == 2024-03-25 18:28:27,094 easyconfig.py:1955 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'Cassiopeia') == 2024-03-25 18:28:27,095 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: easyblock = 'PythonBundle' name = 'Cassiopeia' version = '2.0.0' homepage = 'https://github.com/YosefLab/Cassiopeia' description = """A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction.""" toolchain = {'name': 'foss', 'version': '2023a'} # "Biopython>=1.71", OK # "bokeh>=0.12.15", OK # "cython>=0.29.2", OK pybundle # "ete3>=3.1.1", OK # "hits", OK exts # "itolapi", OK exts # "matplotlib>=2.2.2", OK # "nbconvert>=5.4.0", OK exts # "nbformat>=4.4.0", Ok exts # "networkx>=2.5", OK # "ngs-tools>=1.5.3", OK exts # "numba>=0.51.0", OK # "numpy>=1.19.5", OK # "pandas>=1.1.4", OK # "pysam>=0.14.1", OK # "python-Levenshtein", OK exts # "PyYAML>=3.12", OK # "scipy>=1.2.0", OK # "typing-extensions>=3.7.4", OK # "tqdm>=4", OK builddependencies = [ ('CMake', '3.26.3'), ] dependencies = [ ('Python', '3.11.3'), ('Python-bundle-PyPI', '2023.06'), ('Biopython', '1.83'), ('scikit-build', '0.17.6'), ('bokeh', '3.2.2'), # ('ETE', '3.1.3'), ('matplotlib', '3.7.2'), ('networkx', '3.1'), ('numba', '0.58.1'), ('Pysam', '0.22.0'), ('PyYAML', '6.0'), ('typing-extensions', '4.9.0'), ('tqdm', '4.66.1'), ('hatchling', '1.18.0'), ] use_pip = True sanity_pip_check = True # cleo 2.0.1 has requirement rapidfuzz<3.0.0,>=2.2.0, but you have rapidfuzz 3.7.0. # levenshtein 0.25.0 has requirement rapidfuzz<4.0.0,>=3.1.0, but you have rapidfuzz 2.15.1. exts_list = [ ('hatch_nodejs_version', '0.3.2', { 'checksums': ['8a7828d817b71e50bbbbb01c9bfc0b329657b7900c56846489b9c958de15b54c'], }), ('ngs-tools', '1.8.5', { 'checksums': ['380e236a101c5b1ac3c0fcdbcc908a210179b6ef2a93fbea9f4eb0ec2edc1de0'], }), ('nbformat', '5.10.3', { 'checksums': ['60ed5e910ef7c6264b87d644f276b1b49e24011930deef54605188ddeb211685'], }), ('nbconvert', '7.16.3', { 'checksums': ['a6733b78ce3d47c3f85e504998495b07e6ea9cf9bf6ec1c98dda63ec6ad19142'], }), ('itolapi', '4.1.4', { 'checksums': ['68e87ba51d209da556b0e373b3b0456b644a1a732c193fedbd7785ff37b6a2cb'], }), ('hits', '0.4.0', { 'checksums': ['743bfc1b56ab8fcf9fefacfcad4c1f23e9bafec1b42225709dbe097c8e669383'], }), ('Levenshtein', '0.22.0', { 'modulename': False, 'checksums': ['86d285d770551cb648d4fcfe5243449a479e694e56b65272dc6cbda879012051'], }), ('python-Levenshtein', '0.22.0', { 'modulename': 'Levenshtein', 'checksums': ['6f8e2216fbd4610ccfa1bab2e0052fb23de34c2333c192de08150eeb99717702'], }), (name, version, { # 'test_script': 'make test', 'source_urls': ['https://github.com/YosefLab/Cassiopeia/archive/'], 'sources': [{'download_filename': '%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], 'checksums': ['28ae7495152683f5733222255056a1e7b2f7a51e1cee2f23f0d9f8ae5f4c3742'], }), ] sanity_check_commands = [ "cd %(builddir)s/Cassiopeia/Cassiopeia-* && make test", # failing with: ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ] moduleclass = 'bio' == 2024-03-25 18:28:27,095 parser.py:139 INFO Type checking of easyconfig parameter values passed! == 2024-03-25 18:28:27,095 easyconfig.py:686 INFO setting easyconfig parameter builddependencies: value [('CMake', '3.26.3')] (type: ) == 2024-03-25 18:28:27,095 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.11.3'), ('Python-bundle-PyPI', '2023.06'), ('Biopython', '1.83'), ('scikit-build', '0.17.6'), ('bokeh', '3.2.2'), ('matplotlib', '3.7.2'), ('networkx', '3.1'), ('numba', '0.58.1'), ('Pysam', '0.22.0'), ('PyYAML', '6.0'), ('typing-extensions', '4.9.0'), ('tqdm', '4.66.1'), ('hatchling', '1.18.0')] (type: ) == 2024-03-25 18:28:27,096 easyconfig.py:686 INFO setting easyconfig parameter description: value A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction. (type: ) == 2024-03-25 18:28:27,096 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) == 2024-03-25 18:28:27,096 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('hatch_nodejs_version', '0.3.2', {'checksums': ['8a7828d817b71e50bbbbb01c9bfc0b329657b7900c56846489b9c958de15b54c']}), ('ngs-tools', '1.8.5', {'checksums': ['380e236a101c5b1ac3c0fcdbcc908a210179b6ef2a93fbea9f4eb0ec2edc1de0']}), ('nbformat', '5.10.3', {'checksums': ['60ed5e910ef7c6264b87d644f276b1b49e24011930deef54605188ddeb211685']}), ('nbconvert', '7.16.3', {'checksums': ['a6733b78ce3d47c3f85e504998495b07e6ea9cf9bf6ec1c98dda63ec6ad19142']}), ('itolapi', '4.1.4', {'checksums': ['68e87ba51d209da556b0e373b3b0456b644a1a732c193fedbd7785ff37b6a2cb']}), ('hits', '0.4.0', {'checksums': ['743bfc1b56ab8fcf9fefacfcad4c1f23e9bafec1b42225709dbe097c8e669383']}), ('Levenshtein', '0.22.0', {'modulename': False, 'checksums': ['86d285d770551cb648d4fcfe5243449a479e694e56b65272dc6cbda879012051']}), ('python-Levenshtein', '0.22.0', {'modulename': 'Levenshtein', 'checksums': ['6f8e2216fbd4610ccfa1bab2e0052fb23de34c2333c192de08150eeb99717702']}), ('Cassiopeia', '2.0.0', {'source_urls': ['https://github.com/YosefLab/Cassiopeia/archive/'], 'sources': [{'download_filename': '%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], 'checksums': ['28ae7495152683f5733222255056a1e7b2f7a51e1cee2f23f0d9f8ae5f4c3742']})] (type: ) == 2024-03-25 18:28:27,096 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/YosefLab/Cassiopeia (type: ) == 2024-03-25 18:28:27,096 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value bio (type: ) == 2024-03-25 18:28:27,096 easyconfig.py:686 INFO setting easyconfig parameter name: value Cassiopeia (type: ) == 2024-03-25 18:28:27,096 easyconfig.py:686 INFO setting easyconfig parameter sanity_check_commands: value ['cd %(builddir)s/Cassiopeia/Cassiopeia-* && make test'] (type: ) == 2024-03-25 18:28:27,096 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) == 2024-03-25 18:28:27,096 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2023a'} (type: ) == 2024-03-25 18:28:27,096 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) == 2024-03-25 18:28:27,096 easyconfig.py:686 INFO setting easyconfig parameter version: value 2.0.0 (type: ) == 2024-03-25 18:28:27,096 easyconfig.py:747 INFO Parsing dependency specifications... == 2024-03-25 18:28:27,097 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:28:27,097 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' == 2024-03-25 18:28:27,098 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) == 2024-03-25 18:28:27,098 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='cassiopeia', github_account='cassiopeia', mpi_cmd_prefix='mpirun -n 1', name='Cassiopeia', nameletter='C', nameletterlower='c', namelower='cassiopeia', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.3', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='2.0.0', version_major='2', version_major_minor='2.0', version_minor='0', versionprefix='', versionsuffix='' == 2024-03-25 18:28:27,099 modules.py:626 INFO Checking whether CMake/3.26.3-foss-2023a exists... == 2024-03-25 18:28:27,099 modules.py:647 INFO Module CMake/3.26.3-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,099 modules.py:654 INFO Result for existence check of CMake/3.26.3-foss-2023a module: False == 2024-03-25 18:28:27,099 modules.py:626 INFO Checking whether CMake/3.26.3-gompi-2023a exists... == 2024-03-25 18:28:27,099 modules.py:647 INFO Module CMake/3.26.3-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,099 modules.py:654 INFO Result for existence check of CMake/3.26.3-gompi-2023a module: False == 2024-03-25 18:28:27,100 modules.py:626 INFO Checking whether CMake/3.26.3-gfbf-2023a exists... == 2024-03-25 18:28:27,100 modules.py:647 INFO Module CMake/3.26.3-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,100 modules.py:654 INFO Result for existence check of CMake/3.26.3-gfbf-2023a module: False == 2024-03-25 18:28:27,100 modules.py:626 INFO Checking whether CMake/3.26.3-GCC-12.3.0 exists... == 2024-03-25 18:28:27,100 modules.py:647 INFO Module CMake/3.26.3-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,100 modules.py:654 INFO Result for existence check of CMake/3.26.3-GCC-12.3.0 module: False == 2024-03-25 18:28:27,100 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,101 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,101 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,101 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,101 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'CMake', 'version': '3.26.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,102 modules.py:626 INFO Checking whether Python/3.11.3-foss-2023a exists... == 2024-03-25 18:28:27,102 modules.py:647 INFO Module Python/3.11.3-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,102 modules.py:654 INFO Result for existence check of Python/3.11.3-foss-2023a module: False == 2024-03-25 18:28:27,103 modules.py:626 INFO Checking whether Python/3.11.3-gompi-2023a exists... == 2024-03-25 18:28:27,103 modules.py:647 INFO Module Python/3.11.3-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,103 modules.py:654 INFO Result for existence check of Python/3.11.3-gompi-2023a module: False == 2024-03-25 18:28:27,103 modules.py:626 INFO Checking whether Python/3.11.3-gfbf-2023a exists... == 2024-03-25 18:28:27,103 modules.py:647 INFO Module Python/3.11.3-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,103 modules.py:654 INFO Result for existence check of Python/3.11.3-gfbf-2023a module: False == 2024-03-25 18:28:27,104 modules.py:626 INFO Checking whether Python/3.11.3-GCC-12.3.0 exists... == 2024-03-25 18:28:27,104 modules.py:647 INFO Module Python/3.11.3-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,104 modules.py:654 INFO Result for existence check of Python/3.11.3-GCC-12.3.0 module: False == 2024-03-25 18:28:27,104 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,104 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,104 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,104 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,104 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.11.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,105 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-foss-2023a exists... == 2024-03-25 18:28:27,106 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,106 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-foss-2023a module: False == 2024-03-25 18:28:27,106 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-gompi-2023a exists... == 2024-03-25 18:28:27,106 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,106 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-gompi-2023a module: False == 2024-03-25 18:28:27,106 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-gfbf-2023a exists... == 2024-03-25 18:28:27,106 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,107 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-gfbf-2023a module: False == 2024-03-25 18:28:27,107 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-GCC-12.3.0 exists... == 2024-03-25 18:28:27,107 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,107 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-GCC-12.3.0 module: False == 2024-03-25 18:28:27,107 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,107 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,108 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,108 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,108 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python-bundle-PyPI', 'version': '2023.06', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,109 modules.py:626 INFO Checking whether Biopython/1.83-gompi-2023a exists... == 2024-03-25 18:28:27,109 modules.py:647 INFO Module Biopython/1.83-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,109 modules.py:654 INFO Result for existence check of Biopython/1.83-gompi-2023a module: False == 2024-03-25 18:28:27,109 modules.py:626 INFO Checking whether Biopython/1.83-gfbf-2023a exists... == 2024-03-25 18:28:27,109 modules.py:647 INFO Module Biopython/1.83-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,110 modules.py:654 INFO Result for existence check of Biopython/1.83-gfbf-2023a module: False == 2024-03-25 18:28:27,110 modules.py:626 INFO Checking whether Biopython/1.83-GCC-12.3.0 exists... == 2024-03-25 18:28:27,110 modules.py:647 INFO Module Biopython/1.83-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,110 modules.py:654 INFO Result for existence check of Biopython/1.83-GCC-12.3.0 module: False == 2024-03-25 18:28:27,110 modules.py:626 INFO Checking whether Biopython/1.83-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,110 modules.py:647 INFO Module Biopython/1.83-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,110 modules.py:654 INFO Result for existence check of Biopython/1.83-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,111 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Biopython', 'version': '1.83', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2023a'} == 2024-03-25 18:28:27,112 modules.py:626 INFO Checking whether scikit-build/0.17.6-foss-2023a exists... == 2024-03-25 18:28:27,112 modules.py:647 INFO Module scikit-build/0.17.6-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,112 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-foss-2023a module: False == 2024-03-25 18:28:27,112 modules.py:626 INFO Checking whether scikit-build/0.17.6-gompi-2023a exists... == 2024-03-25 18:28:27,112 modules.py:647 INFO Module scikit-build/0.17.6-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,112 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-gompi-2023a module: False == 2024-03-25 18:28:27,113 modules.py:626 INFO Checking whether scikit-build/0.17.6-gfbf-2023a exists... == 2024-03-25 18:28:27,113 modules.py:647 INFO Module scikit-build/0.17.6-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,113 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-gfbf-2023a module: False == 2024-03-25 18:28:27,113 modules.py:626 INFO Checking whether scikit-build/0.17.6-GCC-12.3.0 exists... == 2024-03-25 18:28:27,113 modules.py:647 INFO Module scikit-build/0.17.6-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,113 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-GCC-12.3.0 module: False == 2024-03-25 18:28:27,113 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,114 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,114 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,114 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,114 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-build', 'version': '0.17.6', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,115 modules.py:626 INFO Checking whether bokeh/3.2.2-gompi-2023a exists... == 2024-03-25 18:28:27,115 modules.py:647 INFO Module bokeh/3.2.2-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,115 modules.py:654 INFO Result for existence check of bokeh/3.2.2-gompi-2023a module: False == 2024-03-25 18:28:27,115 modules.py:626 INFO Checking whether bokeh/3.2.2-gfbf-2023a exists... == 2024-03-25 18:28:27,116 modules.py:647 INFO Module bokeh/3.2.2-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,116 modules.py:654 INFO Result for existence check of bokeh/3.2.2-gfbf-2023a module: False == 2024-03-25 18:28:27,116 modules.py:626 INFO Checking whether bokeh/3.2.2-GCC-12.3.0 exists... == 2024-03-25 18:28:27,116 modules.py:647 INFO Module bokeh/3.2.2-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,116 modules.py:654 INFO Result for existence check of bokeh/3.2.2-GCC-12.3.0 module: False == 2024-03-25 18:28:27,116 modules.py:626 INFO Checking whether bokeh/3.2.2-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,116 modules.py:647 INFO Module bokeh/3.2.2-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,117 modules.py:654 INFO Result for existence check of bokeh/3.2.2-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,117 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'bokeh', 'version': '3.2.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2023a'} == 2024-03-25 18:28:27,118 modules.py:626 INFO Checking whether matplotlib/3.7.2-foss-2023a exists... == 2024-03-25 18:28:27,118 modules.py:647 INFO Module matplotlib/3.7.2-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,118 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-foss-2023a module: False == 2024-03-25 18:28:27,118 modules.py:626 INFO Checking whether matplotlib/3.7.2-gompi-2023a exists... == 2024-03-25 18:28:27,118 modules.py:647 INFO Module matplotlib/3.7.2-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,118 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-gompi-2023a module: False == 2024-03-25 18:28:27,119 modules.py:626 INFO Checking whether matplotlib/3.7.2-GCC-12.3.0 exists... == 2024-03-25 18:28:27,119 modules.py:647 INFO Module matplotlib/3.7.2-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,119 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-GCC-12.3.0 module: False == 2024-03-25 18:28:27,119 modules.py:626 INFO Checking whether matplotlib/3.7.2-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,119 modules.py:647 INFO Module matplotlib/3.7.2-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,119 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,119 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,120 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,120 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'matplotlib', 'version': '3.7.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'gfbf', 'version': '2023a'} == 2024-03-25 18:28:27,121 modules.py:626 INFO Checking whether networkx/3.1-foss-2023a exists... == 2024-03-25 18:28:27,121 modules.py:647 INFO Module networkx/3.1-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,121 modules.py:654 INFO Result for existence check of networkx/3.1-foss-2023a module: False == 2024-03-25 18:28:27,121 modules.py:626 INFO Checking whether networkx/3.1-gompi-2023a exists... == 2024-03-25 18:28:27,121 modules.py:647 INFO Module networkx/3.1-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,122 modules.py:654 INFO Result for existence check of networkx/3.1-gompi-2023a module: False == 2024-03-25 18:28:27,122 modules.py:626 INFO Checking whether networkx/3.1-GCC-12.3.0 exists... == 2024-03-25 18:28:27,122 modules.py:647 INFO Module networkx/3.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,122 modules.py:654 INFO Result for existence check of networkx/3.1-GCC-12.3.0 module: False == 2024-03-25 18:28:27,122 modules.py:626 INFO Checking whether networkx/3.1-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,122 modules.py:647 INFO Module networkx/3.1-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,122 modules.py:654 INFO Result for existence check of networkx/3.1-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,123 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,123 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,123 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '3.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'gfbf', 'version': '2023a'} == 2024-03-25 18:28:27,124 modules.py:626 INFO Checking whether numba/0.58.1-gompi-2023a exists... == 2024-03-25 18:28:27,124 modules.py:647 INFO Module numba/0.58.1-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,124 modules.py:654 INFO Result for existence check of numba/0.58.1-gompi-2023a module: False == 2024-03-25 18:28:27,124 modules.py:626 INFO Checking whether numba/0.58.1-gfbf-2023a exists... == 2024-03-25 18:28:27,124 modules.py:647 INFO Module numba/0.58.1-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,125 modules.py:654 INFO Result for existence check of numba/0.58.1-gfbf-2023a module: False == 2024-03-25 18:28:27,125 modules.py:626 INFO Checking whether numba/0.58.1-GCC-12.3.0 exists... == 2024-03-25 18:28:27,125 modules.py:647 INFO Module numba/0.58.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,125 modules.py:654 INFO Result for existence check of numba/0.58.1-GCC-12.3.0 module: False == 2024-03-25 18:28:27,125 modules.py:626 INFO Checking whether numba/0.58.1-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,125 modules.py:647 INFO Module numba/0.58.1-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,126 modules.py:654 INFO Result for existence check of numba/0.58.1-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,126 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.58.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2023a'} == 2024-03-25 18:28:27,127 modules.py:626 INFO Checking whether Pysam/0.22.0-foss-2023a exists... == 2024-03-25 18:28:27,127 modules.py:647 INFO Module Pysam/0.22.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,127 modules.py:654 INFO Result for existence check of Pysam/0.22.0-foss-2023a module: False == 2024-03-25 18:28:27,127 modules.py:626 INFO Checking whether Pysam/0.22.0-gompi-2023a exists... == 2024-03-25 18:28:27,127 modules.py:647 INFO Module Pysam/0.22.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,127 modules.py:654 INFO Result for existence check of Pysam/0.22.0-gompi-2023a module: False == 2024-03-25 18:28:27,128 modules.py:626 INFO Checking whether Pysam/0.22.0-gfbf-2023a exists... == 2024-03-25 18:28:27,128 modules.py:647 INFO Module Pysam/0.22.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,128 modules.py:654 INFO Result for existence check of Pysam/0.22.0-gfbf-2023a module: False == 2024-03-25 18:28:27,128 modules.py:626 INFO Checking whether Pysam/0.22.0-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,128 modules.py:647 INFO Module Pysam/0.22.0-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,128 modules.py:654 INFO Result for existence check of Pysam/0.22.0-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,128 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,129 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,129 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,129 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Pysam', 'version': '0.22.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '12.3.0'} == 2024-03-25 18:28:27,130 modules.py:626 INFO Checking whether PyYAML/6.0-foss-2023a exists... == 2024-03-25 18:28:27,130 modules.py:647 INFO Module PyYAML/6.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,130 modules.py:654 INFO Result for existence check of PyYAML/6.0-foss-2023a module: False == 2024-03-25 18:28:27,130 modules.py:626 INFO Checking whether PyYAML/6.0-gompi-2023a exists... == 2024-03-25 18:28:27,130 modules.py:647 INFO Module PyYAML/6.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,131 modules.py:654 INFO Result for existence check of PyYAML/6.0-gompi-2023a module: False == 2024-03-25 18:28:27,131 modules.py:626 INFO Checking whether PyYAML/6.0-gfbf-2023a exists... == 2024-03-25 18:28:27,131 modules.py:647 INFO Module PyYAML/6.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,131 modules.py:654 INFO Result for existence check of PyYAML/6.0-gfbf-2023a module: False == 2024-03-25 18:28:27,131 modules.py:626 INFO Checking whether PyYAML/6.0-GCC-12.3.0 exists... == 2024-03-25 18:28:27,131 modules.py:647 INFO Module PyYAML/6.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,131 modules.py:654 INFO Result for existence check of PyYAML/6.0-GCC-12.3.0 module: False == 2024-03-25 18:28:27,132 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,132 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,132 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,132 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,132 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyYAML', 'version': '6.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,133 modules.py:626 INFO Checking whether typing-extensions/4.9.0-foss-2023a exists... == 2024-03-25 18:28:27,133 modules.py:647 INFO Module typing-extensions/4.9.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,133 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-foss-2023a module: False == 2024-03-25 18:28:27,134 modules.py:626 INFO Checking whether typing-extensions/4.9.0-gompi-2023a exists... == 2024-03-25 18:28:27,134 modules.py:647 INFO Module typing-extensions/4.9.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,134 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-gompi-2023a module: False == 2024-03-25 18:28:27,134 modules.py:626 INFO Checking whether typing-extensions/4.9.0-gfbf-2023a exists... == 2024-03-25 18:28:27,134 modules.py:647 INFO Module typing-extensions/4.9.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,134 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-gfbf-2023a module: False == 2024-03-25 18:28:27,134 modules.py:626 INFO Checking whether typing-extensions/4.9.0-GCC-12.3.0 exists... == 2024-03-25 18:28:27,134 modules.py:647 INFO Module typing-extensions/4.9.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,135 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-GCC-12.3.0 module: False == 2024-03-25 18:28:27,135 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,135 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,135 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,135 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,135 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'typing-extensions', 'version': '4.9.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,136 modules.py:626 INFO Checking whether tqdm/4.66.1-foss-2023a exists... == 2024-03-25 18:28:27,136 modules.py:647 INFO Module tqdm/4.66.1-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,137 modules.py:654 INFO Result for existence check of tqdm/4.66.1-foss-2023a module: False == 2024-03-25 18:28:27,137 modules.py:626 INFO Checking whether tqdm/4.66.1-gompi-2023a exists... == 2024-03-25 18:28:27,137 modules.py:647 INFO Module tqdm/4.66.1-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,137 modules.py:654 INFO Result for existence check of tqdm/4.66.1-gompi-2023a module: False == 2024-03-25 18:28:27,137 modules.py:626 INFO Checking whether tqdm/4.66.1-gfbf-2023a exists... == 2024-03-25 18:28:27,137 modules.py:647 INFO Module tqdm/4.66.1-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,138 modules.py:654 INFO Result for existence check of tqdm/4.66.1-gfbf-2023a module: False == 2024-03-25 18:28:27,138 modules.py:626 INFO Checking whether tqdm/4.66.1-GCC-12.3.0 exists... == 2024-03-25 18:28:27,138 modules.py:647 INFO Module tqdm/4.66.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,138 modules.py:654 INFO Result for existence check of tqdm/4.66.1-GCC-12.3.0 module: False == 2024-03-25 18:28:27,138 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,138 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,138 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,138 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,139 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'tqdm', 'version': '4.66.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,140 modules.py:626 INFO Checking whether hatchling/1.18.0-foss-2023a exists... == 2024-03-25 18:28:27,140 modules.py:647 INFO Module hatchling/1.18.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,140 modules.py:654 INFO Result for existence check of hatchling/1.18.0-foss-2023a module: False == 2024-03-25 18:28:27,140 modules.py:626 INFO Checking whether hatchling/1.18.0-gompi-2023a exists... == 2024-03-25 18:28:27,140 modules.py:647 INFO Module hatchling/1.18.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,140 modules.py:654 INFO Result for existence check of hatchling/1.18.0-gompi-2023a module: False == 2024-03-25 18:28:27,141 modules.py:626 INFO Checking whether hatchling/1.18.0-gfbf-2023a exists... == 2024-03-25 18:28:27,141 modules.py:647 INFO Module hatchling/1.18.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,141 modules.py:654 INFO Result for existence check of hatchling/1.18.0-gfbf-2023a module: False == 2024-03-25 18:28:27,141 modules.py:626 INFO Checking whether hatchling/1.18.0-GCC-12.3.0 exists... == 2024-03-25 18:28:27,141 modules.py:647 INFO Module hatchling/1.18.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,141 modules.py:654 INFO Result for existence check of hatchling/1.18.0-GCC-12.3.0 module: False == 2024-03-25 18:28:27,141 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,142 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,142 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,142 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,142 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'hatchling', 'version': '1.18.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,144 pythonpackage.py:408 INFO Using default value for expected module name (lowercase software name): 'itolapi' == 2024-03-25 18:28:27,144 pythonpackage.py:441 INFO Using pip with --no-deps option == 2024-03-25 18:28:27,144 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc47063/eb-78i3uhl1 (previous value: '/tmp/vsc47063/eb-78i3uhl1') == 2024-03-25 18:28:27,144 pythonpackage.py:458 INFO Using /tmp/vsc47063/eb-78i3uhl1 as pip cache directory == 2024-03-25 18:28:27,144 pythonpackage.py:473 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command == 2024-03-25 18:28:27,145 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... == 2024-03-25 18:28:27,146 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') == 2024-03-25 18:28:27,146 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') == 2024-03-25 18:28:27,146 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') == 2024-03-25 18:28:27,146 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') == 2024-03-25 18:28:27,146 modules.py:299 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it == 2024-03-25 18:28:27,147 modules.py:455 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all == 2024-03-25 18:28:27,147 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] == 2024-03-25 18:28:27,148 easyconfig.py:1908 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle == 2024-03-25 18:28:27,148 easyconfig.py:1955 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'Cassiopeia') == 2024-03-25 18:28:27,148 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: easyblock = 'PythonBundle' name = 'Cassiopeia' version = '2.0.0' homepage = 'https://github.com/YosefLab/Cassiopeia' description = """A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction.""" toolchain = {'name': 'foss', 'version': '2023a'} # "Biopython>=1.71", OK # "bokeh>=0.12.15", OK # "cython>=0.29.2", OK pybundle # "ete3>=3.1.1", OK # "hits", OK exts # "itolapi", OK exts # "matplotlib>=2.2.2", OK # "nbconvert>=5.4.0", OK exts # "nbformat>=4.4.0", Ok exts # "networkx>=2.5", OK # "ngs-tools>=1.5.3", OK exts # "numba>=0.51.0", OK # "numpy>=1.19.5", OK # "pandas>=1.1.4", OK # "pysam>=0.14.1", OK # "python-Levenshtein", OK exts # "PyYAML>=3.12", OK # "scipy>=1.2.0", OK # "typing-extensions>=3.7.4", OK # "tqdm>=4", OK builddependencies = [ ('CMake', '3.26.3'), ] dependencies = [ ('Python', '3.11.3'), ('Python-bundle-PyPI', '2023.06'), ('Biopython', '1.83'), ('scikit-build', '0.17.6'), ('bokeh', '3.2.2'), # ('ETE', '3.1.3'), ('matplotlib', '3.7.2'), ('networkx', '3.1'), ('numba', '0.58.1'), ('Pysam', '0.22.0'), ('PyYAML', '6.0'), ('typing-extensions', '4.9.0'), ('tqdm', '4.66.1'), ('hatchling', '1.18.0'), ] use_pip = True sanity_pip_check = True # cleo 2.0.1 has requirement rapidfuzz<3.0.0,>=2.2.0, but you have rapidfuzz 3.7.0. # levenshtein 0.25.0 has requirement rapidfuzz<4.0.0,>=3.1.0, but you have rapidfuzz 2.15.1. exts_list = [ ('hatch_nodejs_version', '0.3.2', { 'checksums': ['8a7828d817b71e50bbbbb01c9bfc0b329657b7900c56846489b9c958de15b54c'], }), ('ngs-tools', '1.8.5', { 'checksums': ['380e236a101c5b1ac3c0fcdbcc908a210179b6ef2a93fbea9f4eb0ec2edc1de0'], }), ('nbformat', '5.10.3', { 'checksums': ['60ed5e910ef7c6264b87d644f276b1b49e24011930deef54605188ddeb211685'], }), ('nbconvert', '7.16.3', { 'checksums': ['a6733b78ce3d47c3f85e504998495b07e6ea9cf9bf6ec1c98dda63ec6ad19142'], }), ('itolapi', '4.1.4', { 'checksums': ['68e87ba51d209da556b0e373b3b0456b644a1a732c193fedbd7785ff37b6a2cb'], }), ('hits', '0.4.0', { 'checksums': ['743bfc1b56ab8fcf9fefacfcad4c1f23e9bafec1b42225709dbe097c8e669383'], }), ('Levenshtein', '0.22.0', { 'modulename': False, 'checksums': ['86d285d770551cb648d4fcfe5243449a479e694e56b65272dc6cbda879012051'], }), ('python-Levenshtein', '0.22.0', { 'modulename': 'Levenshtein', 'checksums': ['6f8e2216fbd4610ccfa1bab2e0052fb23de34c2333c192de08150eeb99717702'], }), (name, version, { # 'test_script': 'make test', 'source_urls': ['https://github.com/YosefLab/Cassiopeia/archive/'], 'sources': [{'download_filename': '%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], 'checksums': ['28ae7495152683f5733222255056a1e7b2f7a51e1cee2f23f0d9f8ae5f4c3742'], }), ] sanity_check_commands = [ "cd %(builddir)s/Cassiopeia/Cassiopeia-* && make test", # failing with: ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ] moduleclass = 'bio' == 2024-03-25 18:28:27,148 parser.py:139 INFO Type checking of easyconfig parameter values passed! == 2024-03-25 18:28:27,149 easyconfig.py:686 INFO setting easyconfig parameter builddependencies: value [('CMake', '3.26.3')] (type: ) == 2024-03-25 18:28:27,149 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.11.3'), ('Python-bundle-PyPI', '2023.06'), ('Biopython', '1.83'), ('scikit-build', '0.17.6'), ('bokeh', '3.2.2'), ('matplotlib', '3.7.2'), ('networkx', '3.1'), ('numba', '0.58.1'), ('Pysam', '0.22.0'), ('PyYAML', '6.0'), ('typing-extensions', '4.9.0'), ('tqdm', '4.66.1'), ('hatchling', '1.18.0')] (type: ) == 2024-03-25 18:28:27,149 easyconfig.py:686 INFO setting easyconfig parameter description: value A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction. (type: ) == 2024-03-25 18:28:27,149 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) == 2024-03-25 18:28:27,149 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('hatch_nodejs_version', '0.3.2', {'checksums': ['8a7828d817b71e50bbbbb01c9bfc0b329657b7900c56846489b9c958de15b54c']}), ('ngs-tools', '1.8.5', {'checksums': ['380e236a101c5b1ac3c0fcdbcc908a210179b6ef2a93fbea9f4eb0ec2edc1de0']}), ('nbformat', '5.10.3', {'checksums': ['60ed5e910ef7c6264b87d644f276b1b49e24011930deef54605188ddeb211685']}), ('nbconvert', '7.16.3', {'checksums': ['a6733b78ce3d47c3f85e504998495b07e6ea9cf9bf6ec1c98dda63ec6ad19142']}), ('itolapi', '4.1.4', {'checksums': ['68e87ba51d209da556b0e373b3b0456b644a1a732c193fedbd7785ff37b6a2cb']}), ('hits', '0.4.0', {'checksums': ['743bfc1b56ab8fcf9fefacfcad4c1f23e9bafec1b42225709dbe097c8e669383']}), ('Levenshtein', '0.22.0', {'modulename': False, 'checksums': ['86d285d770551cb648d4fcfe5243449a479e694e56b65272dc6cbda879012051']}), ('python-Levenshtein', '0.22.0', {'modulename': 'Levenshtein', 'checksums': ['6f8e2216fbd4610ccfa1bab2e0052fb23de34c2333c192de08150eeb99717702']}), ('Cassiopeia', '2.0.0', {'source_urls': ['https://github.com/YosefLab/Cassiopeia/archive/'], 'sources': [{'download_filename': '%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], 'checksums': ['28ae7495152683f5733222255056a1e7b2f7a51e1cee2f23f0d9f8ae5f4c3742']})] (type: ) == 2024-03-25 18:28:27,149 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/YosefLab/Cassiopeia (type: ) == 2024-03-25 18:28:27,149 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value bio (type: ) == 2024-03-25 18:28:27,149 easyconfig.py:686 INFO setting easyconfig parameter name: value Cassiopeia (type: ) == 2024-03-25 18:28:27,149 easyconfig.py:686 INFO setting easyconfig parameter sanity_check_commands: value ['cd %(builddir)s/Cassiopeia/Cassiopeia-* && make test'] (type: ) == 2024-03-25 18:28:27,149 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) == 2024-03-25 18:28:27,149 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2023a'} (type: ) == 2024-03-25 18:28:27,149 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) == 2024-03-25 18:28:27,149 easyconfig.py:686 INFO setting easyconfig parameter version: value 2.0.0 (type: ) == 2024-03-25 18:28:27,150 easyconfig.py:747 INFO Parsing dependency specifications... == 2024-03-25 18:28:27,150 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:28:27,151 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' == 2024-03-25 18:28:27,151 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) == 2024-03-25 18:28:27,151 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='cassiopeia', github_account='cassiopeia', mpi_cmd_prefix='mpirun -n 1', name='Cassiopeia', nameletter='C', nameletterlower='c', namelower='cassiopeia', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.3', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='2.0.0', version_major='2', version_major_minor='2.0', version_minor='0', versionprefix='', versionsuffix='' == 2024-03-25 18:28:27,152 modules.py:626 INFO Checking whether CMake/3.26.3-foss-2023a exists... == 2024-03-25 18:28:27,152 modules.py:647 INFO Module CMake/3.26.3-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,152 modules.py:654 INFO Result for existence check of CMake/3.26.3-foss-2023a module: False == 2024-03-25 18:28:27,152 modules.py:626 INFO Checking whether CMake/3.26.3-gompi-2023a exists... == 2024-03-25 18:28:27,153 modules.py:647 INFO Module CMake/3.26.3-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,153 modules.py:654 INFO Result for existence check of CMake/3.26.3-gompi-2023a module: False == 2024-03-25 18:28:27,153 modules.py:626 INFO Checking whether CMake/3.26.3-gfbf-2023a exists... == 2024-03-25 18:28:27,153 modules.py:647 INFO Module CMake/3.26.3-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,153 modules.py:654 INFO Result for existence check of CMake/3.26.3-gfbf-2023a module: False == 2024-03-25 18:28:27,153 modules.py:626 INFO Checking whether CMake/3.26.3-GCC-12.3.0 exists... == 2024-03-25 18:28:27,153 modules.py:647 INFO Module CMake/3.26.3-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,154 modules.py:654 INFO Result for existence check of CMake/3.26.3-GCC-12.3.0 module: False == 2024-03-25 18:28:27,154 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,154 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,154 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,154 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,154 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'CMake', 'version': '3.26.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,155 modules.py:626 INFO Checking whether Python/3.11.3-foss-2023a exists... == 2024-03-25 18:28:27,156 modules.py:647 INFO Module Python/3.11.3-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,156 modules.py:654 INFO Result for existence check of Python/3.11.3-foss-2023a module: False == 2024-03-25 18:28:27,156 modules.py:626 INFO Checking whether Python/3.11.3-gompi-2023a exists... == 2024-03-25 18:28:27,156 modules.py:647 INFO Module Python/3.11.3-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,156 modules.py:654 INFO Result for existence check of Python/3.11.3-gompi-2023a module: False == 2024-03-25 18:28:27,156 modules.py:626 INFO Checking whether Python/3.11.3-gfbf-2023a exists... == 2024-03-25 18:28:27,156 modules.py:647 INFO Module Python/3.11.3-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,157 modules.py:654 INFO Result for existence check of Python/3.11.3-gfbf-2023a module: False == 2024-03-25 18:28:27,157 modules.py:626 INFO Checking whether Python/3.11.3-GCC-12.3.0 exists... == 2024-03-25 18:28:27,157 modules.py:647 INFO Module Python/3.11.3-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,157 modules.py:654 INFO Result for existence check of Python/3.11.3-GCC-12.3.0 module: False == 2024-03-25 18:28:27,157 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,157 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,157 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,158 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,158 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.11.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,159 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-foss-2023a exists... == 2024-03-25 18:28:27,159 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,159 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-foss-2023a module: False == 2024-03-25 18:28:27,159 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-gompi-2023a exists... == 2024-03-25 18:28:27,159 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,159 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-gompi-2023a module: False == 2024-03-25 18:28:27,160 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-gfbf-2023a exists... == 2024-03-25 18:28:27,160 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,160 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-gfbf-2023a module: False == 2024-03-25 18:28:27,160 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-GCC-12.3.0 exists... == 2024-03-25 18:28:27,160 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,160 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-GCC-12.3.0 module: False == 2024-03-25 18:28:27,160 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,161 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,161 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,161 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,161 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python-bundle-PyPI', 'version': '2023.06', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,162 modules.py:626 INFO Checking whether Biopython/1.83-gompi-2023a exists... == 2024-03-25 18:28:27,162 modules.py:647 INFO Module Biopython/1.83-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,162 modules.py:654 INFO Result for existence check of Biopython/1.83-gompi-2023a module: False == 2024-03-25 18:28:27,162 modules.py:626 INFO Checking whether Biopython/1.83-gfbf-2023a exists... == 2024-03-25 18:28:27,163 modules.py:647 INFO Module Biopython/1.83-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,163 modules.py:654 INFO Result for existence check of Biopython/1.83-gfbf-2023a module: False == 2024-03-25 18:28:27,163 modules.py:626 INFO Checking whether Biopython/1.83-GCC-12.3.0 exists... == 2024-03-25 18:28:27,163 modules.py:647 INFO Module Biopython/1.83-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,163 modules.py:654 INFO Result for existence check of Biopython/1.83-GCC-12.3.0 module: False == 2024-03-25 18:28:27,163 modules.py:626 INFO Checking whether Biopython/1.83-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,163 modules.py:647 INFO Module Biopython/1.83-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,164 modules.py:654 INFO Result for existence check of Biopython/1.83-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,164 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Biopython', 'version': '1.83', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2023a'} == 2024-03-25 18:28:27,165 modules.py:626 INFO Checking whether scikit-build/0.17.6-foss-2023a exists... == 2024-03-25 18:28:27,165 modules.py:647 INFO Module scikit-build/0.17.6-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,165 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-foss-2023a module: False == 2024-03-25 18:28:27,165 modules.py:626 INFO Checking whether scikit-build/0.17.6-gompi-2023a exists... == 2024-03-25 18:28:27,165 modules.py:647 INFO Module scikit-build/0.17.6-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,165 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-gompi-2023a module: False == 2024-03-25 18:28:27,166 modules.py:626 INFO Checking whether scikit-build/0.17.6-gfbf-2023a exists... == 2024-03-25 18:28:27,166 modules.py:647 INFO Module scikit-build/0.17.6-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,166 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-gfbf-2023a module: False == 2024-03-25 18:28:27,166 modules.py:626 INFO Checking whether scikit-build/0.17.6-GCC-12.3.0 exists... == 2024-03-25 18:28:27,166 modules.py:647 INFO Module scikit-build/0.17.6-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,166 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-GCC-12.3.0 module: False == 2024-03-25 18:28:27,166 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,167 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,167 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,167 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,167 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-build', 'version': '0.17.6', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,168 modules.py:626 INFO Checking whether bokeh/3.2.2-gompi-2023a exists... == 2024-03-25 18:28:27,168 modules.py:647 INFO Module bokeh/3.2.2-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,168 modules.py:654 INFO Result for existence check of bokeh/3.2.2-gompi-2023a module: False == 2024-03-25 18:28:27,169 modules.py:626 INFO Checking whether bokeh/3.2.2-gfbf-2023a exists... == 2024-03-25 18:28:27,169 modules.py:647 INFO Module bokeh/3.2.2-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,169 modules.py:654 INFO Result for existence check of bokeh/3.2.2-gfbf-2023a module: False == 2024-03-25 18:28:27,169 modules.py:626 INFO Checking whether bokeh/3.2.2-GCC-12.3.0 exists... == 2024-03-25 18:28:27,169 modules.py:647 INFO Module bokeh/3.2.2-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,169 modules.py:654 INFO Result for existence check of bokeh/3.2.2-GCC-12.3.0 module: False == 2024-03-25 18:28:27,169 modules.py:626 INFO Checking whether bokeh/3.2.2-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,169 modules.py:647 INFO Module bokeh/3.2.2-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,170 modules.py:654 INFO Result for existence check of bokeh/3.2.2-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,170 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'bokeh', 'version': '3.2.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2023a'} == 2024-03-25 18:28:27,171 modules.py:626 INFO Checking whether matplotlib/3.7.2-foss-2023a exists... == 2024-03-25 18:28:27,171 modules.py:647 INFO Module matplotlib/3.7.2-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,171 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-foss-2023a module: False == 2024-03-25 18:28:27,171 modules.py:626 INFO Checking whether matplotlib/3.7.2-gompi-2023a exists... == 2024-03-25 18:28:27,171 modules.py:647 INFO Module matplotlib/3.7.2-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,172 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-gompi-2023a module: False == 2024-03-25 18:28:27,172 modules.py:626 INFO Checking whether matplotlib/3.7.2-GCC-12.3.0 exists... == 2024-03-25 18:28:27,172 modules.py:647 INFO Module matplotlib/3.7.2-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,172 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-GCC-12.3.0 module: False == 2024-03-25 18:28:27,172 modules.py:626 INFO Checking whether matplotlib/3.7.2-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,172 modules.py:647 INFO Module matplotlib/3.7.2-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,172 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,173 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,173 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,173 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'matplotlib', 'version': '3.7.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'gfbf', 'version': '2023a'} == 2024-03-25 18:28:27,174 modules.py:626 INFO Checking whether networkx/3.1-foss-2023a exists... == 2024-03-25 18:28:27,174 modules.py:647 INFO Module networkx/3.1-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,174 modules.py:654 INFO Result for existence check of networkx/3.1-foss-2023a module: False == 2024-03-25 18:28:27,174 modules.py:626 INFO Checking whether networkx/3.1-gompi-2023a exists... == 2024-03-25 18:28:27,174 modules.py:647 INFO Module networkx/3.1-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,175 modules.py:654 INFO Result for existence check of networkx/3.1-gompi-2023a module: False == 2024-03-25 18:28:27,175 modules.py:626 INFO Checking whether networkx/3.1-GCC-12.3.0 exists... == 2024-03-25 18:28:27,175 modules.py:647 INFO Module networkx/3.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,175 modules.py:654 INFO Result for existence check of networkx/3.1-GCC-12.3.0 module: False == 2024-03-25 18:28:27,175 modules.py:626 INFO Checking whether networkx/3.1-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,175 modules.py:647 INFO Module networkx/3.1-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,176 modules.py:654 INFO Result for existence check of networkx/3.1-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,176 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,176 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,176 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '3.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'gfbf', 'version': '2023a'} == 2024-03-25 18:28:27,177 modules.py:626 INFO Checking whether numba/0.58.1-gompi-2023a exists... == 2024-03-25 18:28:27,177 modules.py:647 INFO Module numba/0.58.1-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,177 modules.py:654 INFO Result for existence check of numba/0.58.1-gompi-2023a module: False == 2024-03-25 18:28:27,177 modules.py:626 INFO Checking whether numba/0.58.1-gfbf-2023a exists... == 2024-03-25 18:28:27,178 modules.py:647 INFO Module numba/0.58.1-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,178 modules.py:654 INFO Result for existence check of numba/0.58.1-gfbf-2023a module: False == 2024-03-25 18:28:27,178 modules.py:626 INFO Checking whether numba/0.58.1-GCC-12.3.0 exists... == 2024-03-25 18:28:27,178 modules.py:647 INFO Module numba/0.58.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,178 modules.py:654 INFO Result for existence check of numba/0.58.1-GCC-12.3.0 module: False == 2024-03-25 18:28:27,178 modules.py:626 INFO Checking whether numba/0.58.1-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,178 modules.py:647 INFO Module numba/0.58.1-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,179 modules.py:654 INFO Result for existence check of numba/0.58.1-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,179 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.58.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2023a'} == 2024-03-25 18:28:27,180 modules.py:626 INFO Checking whether Pysam/0.22.0-foss-2023a exists... == 2024-03-25 18:28:27,180 modules.py:647 INFO Module Pysam/0.22.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,180 modules.py:654 INFO Result for existence check of Pysam/0.22.0-foss-2023a module: False == 2024-03-25 18:28:27,180 modules.py:626 INFO Checking whether Pysam/0.22.0-gompi-2023a exists... == 2024-03-25 18:28:27,180 modules.py:647 INFO Module Pysam/0.22.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,180 modules.py:654 INFO Result for existence check of Pysam/0.22.0-gompi-2023a module: False == 2024-03-25 18:28:27,181 modules.py:626 INFO Checking whether Pysam/0.22.0-gfbf-2023a exists... == 2024-03-25 18:28:27,181 modules.py:647 INFO Module Pysam/0.22.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,181 modules.py:654 INFO Result for existence check of Pysam/0.22.0-gfbf-2023a module: False == 2024-03-25 18:28:27,181 modules.py:626 INFO Checking whether Pysam/0.22.0-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,181 modules.py:647 INFO Module Pysam/0.22.0-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,181 modules.py:654 INFO Result for existence check of Pysam/0.22.0-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,181 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,182 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,182 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,182 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Pysam', 'version': '0.22.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '12.3.0'} == 2024-03-25 18:28:27,183 modules.py:626 INFO Checking whether PyYAML/6.0-foss-2023a exists... == 2024-03-25 18:28:27,183 modules.py:647 INFO Module PyYAML/6.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,183 modules.py:654 INFO Result for existence check of PyYAML/6.0-foss-2023a module: False == 2024-03-25 18:28:27,183 modules.py:626 INFO Checking whether PyYAML/6.0-gompi-2023a exists... == 2024-03-25 18:28:27,183 modules.py:647 INFO Module PyYAML/6.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,184 modules.py:654 INFO Result for existence check of PyYAML/6.0-gompi-2023a module: False == 2024-03-25 18:28:27,184 modules.py:626 INFO Checking whether PyYAML/6.0-gfbf-2023a exists... == 2024-03-25 18:28:27,184 modules.py:647 INFO Module PyYAML/6.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,184 modules.py:654 INFO Result for existence check of PyYAML/6.0-gfbf-2023a module: False == 2024-03-25 18:28:27,184 modules.py:626 INFO Checking whether PyYAML/6.0-GCC-12.3.0 exists... == 2024-03-25 18:28:27,184 modules.py:647 INFO Module PyYAML/6.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,184 modules.py:654 INFO Result for existence check of PyYAML/6.0-GCC-12.3.0 module: False == 2024-03-25 18:28:27,185 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,185 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,185 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,185 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,185 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyYAML', 'version': '6.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,186 modules.py:626 INFO Checking whether typing-extensions/4.9.0-foss-2023a exists... == 2024-03-25 18:28:27,186 modules.py:647 INFO Module typing-extensions/4.9.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,186 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-foss-2023a module: False == 2024-03-25 18:28:27,187 modules.py:626 INFO Checking whether typing-extensions/4.9.0-gompi-2023a exists... == 2024-03-25 18:28:27,187 modules.py:647 INFO Module typing-extensions/4.9.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,187 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-gompi-2023a module: False == 2024-03-25 18:28:27,187 modules.py:626 INFO Checking whether typing-extensions/4.9.0-gfbf-2023a exists... == 2024-03-25 18:28:27,187 modules.py:647 INFO Module typing-extensions/4.9.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,187 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-gfbf-2023a module: False == 2024-03-25 18:28:27,187 modules.py:626 INFO Checking whether typing-extensions/4.9.0-GCC-12.3.0 exists... == 2024-03-25 18:28:27,187 modules.py:647 INFO Module typing-extensions/4.9.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,188 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-GCC-12.3.0 module: False == 2024-03-25 18:28:27,188 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,188 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,188 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,188 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,188 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'typing-extensions', 'version': '4.9.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,189 modules.py:626 INFO Checking whether tqdm/4.66.1-foss-2023a exists... == 2024-03-25 18:28:27,189 modules.py:647 INFO Module tqdm/4.66.1-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,190 modules.py:654 INFO Result for existence check of tqdm/4.66.1-foss-2023a module: False == 2024-03-25 18:28:27,190 modules.py:626 INFO Checking whether tqdm/4.66.1-gompi-2023a exists... == 2024-03-25 18:28:27,190 modules.py:647 INFO Module tqdm/4.66.1-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,190 modules.py:654 INFO Result for existence check of tqdm/4.66.1-gompi-2023a module: False == 2024-03-25 18:28:27,190 modules.py:626 INFO Checking whether tqdm/4.66.1-gfbf-2023a exists... == 2024-03-25 18:28:27,190 modules.py:647 INFO Module tqdm/4.66.1-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,191 modules.py:654 INFO Result for existence check of tqdm/4.66.1-gfbf-2023a module: False == 2024-03-25 18:28:27,191 modules.py:626 INFO Checking whether tqdm/4.66.1-GCC-12.3.0 exists... == 2024-03-25 18:28:27,191 modules.py:647 INFO Module tqdm/4.66.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,191 modules.py:654 INFO Result for existence check of tqdm/4.66.1-GCC-12.3.0 module: False == 2024-03-25 18:28:27,191 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,191 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,191 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,191 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,192 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'tqdm', 'version': '4.66.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,193 modules.py:626 INFO Checking whether hatchling/1.18.0-foss-2023a exists... == 2024-03-25 18:28:27,193 modules.py:647 INFO Module hatchling/1.18.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,193 modules.py:654 INFO Result for existence check of hatchling/1.18.0-foss-2023a module: False == 2024-03-25 18:28:27,193 modules.py:626 INFO Checking whether hatchling/1.18.0-gompi-2023a exists... == 2024-03-25 18:28:27,193 modules.py:647 INFO Module hatchling/1.18.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,193 modules.py:654 INFO Result for existence check of hatchling/1.18.0-gompi-2023a module: False == 2024-03-25 18:28:27,194 modules.py:626 INFO Checking whether hatchling/1.18.0-gfbf-2023a exists... == 2024-03-25 18:28:27,194 modules.py:647 INFO Module hatchling/1.18.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,194 modules.py:654 INFO Result for existence check of hatchling/1.18.0-gfbf-2023a module: False == 2024-03-25 18:28:27,194 modules.py:626 INFO Checking whether hatchling/1.18.0-GCC-12.3.0 exists... == 2024-03-25 18:28:27,194 modules.py:647 INFO Module hatchling/1.18.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,194 modules.py:654 INFO Result for existence check of hatchling/1.18.0-GCC-12.3.0 module: False == 2024-03-25 18:28:27,194 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,195 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,195 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,195 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,195 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'hatchling', 'version': '1.18.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,197 pythonpackage.py:408 INFO Using default value for expected module name (lowercase software name): 'hits' == 2024-03-25 18:28:27,197 pythonpackage.py:441 INFO Using pip with --no-deps option == 2024-03-25 18:28:27,197 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc47063/eb-78i3uhl1 (previous value: '/tmp/vsc47063/eb-78i3uhl1') == 2024-03-25 18:28:27,197 pythonpackage.py:458 INFO Using /tmp/vsc47063/eb-78i3uhl1 as pip cache directory == 2024-03-25 18:28:27,197 pythonpackage.py:473 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command == 2024-03-25 18:28:27,198 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... == 2024-03-25 18:28:27,199 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') == 2024-03-25 18:28:27,199 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') == 2024-03-25 18:28:27,199 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') == 2024-03-25 18:28:27,199 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') == 2024-03-25 18:28:27,200 modules.py:299 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it == 2024-03-25 18:28:27,200 modules.py:455 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all == 2024-03-25 18:28:27,200 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] == 2024-03-25 18:28:27,201 easyconfig.py:1908 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle == 2024-03-25 18:28:27,201 easyconfig.py:1955 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'Cassiopeia') == 2024-03-25 18:28:27,201 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: easyblock = 'PythonBundle' name = 'Cassiopeia' version = '2.0.0' homepage = 'https://github.com/YosefLab/Cassiopeia' description = """A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction.""" toolchain = {'name': 'foss', 'version': '2023a'} # "Biopython>=1.71", OK # "bokeh>=0.12.15", OK # "cython>=0.29.2", OK pybundle # "ete3>=3.1.1", OK # "hits", OK exts # "itolapi", OK exts # "matplotlib>=2.2.2", OK # "nbconvert>=5.4.0", OK exts # "nbformat>=4.4.0", Ok exts # "networkx>=2.5", OK # "ngs-tools>=1.5.3", OK exts # "numba>=0.51.0", OK # "numpy>=1.19.5", OK # "pandas>=1.1.4", OK # "pysam>=0.14.1", OK # "python-Levenshtein", OK exts # "PyYAML>=3.12", OK # "scipy>=1.2.0", OK # "typing-extensions>=3.7.4", OK # "tqdm>=4", OK builddependencies = [ ('CMake', '3.26.3'), ] dependencies = [ ('Python', '3.11.3'), ('Python-bundle-PyPI', '2023.06'), ('Biopython', '1.83'), ('scikit-build', '0.17.6'), ('bokeh', '3.2.2'), # ('ETE', '3.1.3'), ('matplotlib', '3.7.2'), ('networkx', '3.1'), ('numba', '0.58.1'), ('Pysam', '0.22.0'), ('PyYAML', '6.0'), ('typing-extensions', '4.9.0'), ('tqdm', '4.66.1'), ('hatchling', '1.18.0'), ] use_pip = True sanity_pip_check = True # cleo 2.0.1 has requirement rapidfuzz<3.0.0,>=2.2.0, but you have rapidfuzz 3.7.0. # levenshtein 0.25.0 has requirement rapidfuzz<4.0.0,>=3.1.0, but you have rapidfuzz 2.15.1. exts_list = [ ('hatch_nodejs_version', '0.3.2', { 'checksums': ['8a7828d817b71e50bbbbb01c9bfc0b329657b7900c56846489b9c958de15b54c'], }), ('ngs-tools', '1.8.5', { 'checksums': ['380e236a101c5b1ac3c0fcdbcc908a210179b6ef2a93fbea9f4eb0ec2edc1de0'], }), ('nbformat', '5.10.3', { 'checksums': ['60ed5e910ef7c6264b87d644f276b1b49e24011930deef54605188ddeb211685'], }), ('nbconvert', '7.16.3', { 'checksums': ['a6733b78ce3d47c3f85e504998495b07e6ea9cf9bf6ec1c98dda63ec6ad19142'], }), ('itolapi', '4.1.4', { 'checksums': ['68e87ba51d209da556b0e373b3b0456b644a1a732c193fedbd7785ff37b6a2cb'], }), ('hits', '0.4.0', { 'checksums': ['743bfc1b56ab8fcf9fefacfcad4c1f23e9bafec1b42225709dbe097c8e669383'], }), ('Levenshtein', '0.22.0', { 'modulename': False, 'checksums': ['86d285d770551cb648d4fcfe5243449a479e694e56b65272dc6cbda879012051'], }), ('python-Levenshtein', '0.22.0', { 'modulename': 'Levenshtein', 'checksums': ['6f8e2216fbd4610ccfa1bab2e0052fb23de34c2333c192de08150eeb99717702'], }), (name, version, { # 'test_script': 'make test', 'source_urls': ['https://github.com/YosefLab/Cassiopeia/archive/'], 'sources': [{'download_filename': '%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], 'checksums': ['28ae7495152683f5733222255056a1e7b2f7a51e1cee2f23f0d9f8ae5f4c3742'], }), ] sanity_check_commands = [ "cd %(builddir)s/Cassiopeia/Cassiopeia-* && make test", # failing with: ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ] moduleclass = 'bio' == 2024-03-25 18:28:27,201 parser.py:139 INFO Type checking of easyconfig parameter values passed! == 2024-03-25 18:28:27,202 easyconfig.py:686 INFO setting easyconfig parameter builddependencies: value [('CMake', '3.26.3')] (type: ) == 2024-03-25 18:28:27,202 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.11.3'), ('Python-bundle-PyPI', '2023.06'), ('Biopython', '1.83'), ('scikit-build', '0.17.6'), ('bokeh', '3.2.2'), ('matplotlib', '3.7.2'), ('networkx', '3.1'), ('numba', '0.58.1'), ('Pysam', '0.22.0'), ('PyYAML', '6.0'), ('typing-extensions', '4.9.0'), ('tqdm', '4.66.1'), ('hatchling', '1.18.0')] (type: ) == 2024-03-25 18:28:27,202 easyconfig.py:686 INFO setting easyconfig parameter description: value A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction. (type: ) == 2024-03-25 18:28:27,202 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) == 2024-03-25 18:28:27,202 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('hatch_nodejs_version', '0.3.2', {'checksums': ['8a7828d817b71e50bbbbb01c9bfc0b329657b7900c56846489b9c958de15b54c']}), ('ngs-tools', '1.8.5', {'checksums': ['380e236a101c5b1ac3c0fcdbcc908a210179b6ef2a93fbea9f4eb0ec2edc1de0']}), ('nbformat', '5.10.3', {'checksums': ['60ed5e910ef7c6264b87d644f276b1b49e24011930deef54605188ddeb211685']}), ('nbconvert', '7.16.3', {'checksums': ['a6733b78ce3d47c3f85e504998495b07e6ea9cf9bf6ec1c98dda63ec6ad19142']}), ('itolapi', '4.1.4', {'checksums': ['68e87ba51d209da556b0e373b3b0456b644a1a732c193fedbd7785ff37b6a2cb']}), ('hits', '0.4.0', {'checksums': ['743bfc1b56ab8fcf9fefacfcad4c1f23e9bafec1b42225709dbe097c8e669383']}), ('Levenshtein', '0.22.0', {'modulename': False, 'checksums': ['86d285d770551cb648d4fcfe5243449a479e694e56b65272dc6cbda879012051']}), ('python-Levenshtein', '0.22.0', {'modulename': 'Levenshtein', 'checksums': ['6f8e2216fbd4610ccfa1bab2e0052fb23de34c2333c192de08150eeb99717702']}), ('Cassiopeia', '2.0.0', {'source_urls': ['https://github.com/YosefLab/Cassiopeia/archive/'], 'sources': [{'download_filename': '%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], 'checksums': ['28ae7495152683f5733222255056a1e7b2f7a51e1cee2f23f0d9f8ae5f4c3742']})] (type: ) == 2024-03-25 18:28:27,202 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/YosefLab/Cassiopeia (type: ) == 2024-03-25 18:28:27,202 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value bio (type: ) == 2024-03-25 18:28:27,202 easyconfig.py:686 INFO setting easyconfig parameter name: value Cassiopeia (type: ) == 2024-03-25 18:28:27,202 easyconfig.py:686 INFO setting easyconfig parameter sanity_check_commands: value ['cd %(builddir)s/Cassiopeia/Cassiopeia-* && make test'] (type: ) == 2024-03-25 18:28:27,202 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) == 2024-03-25 18:28:27,202 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2023a'} (type: ) == 2024-03-25 18:28:27,202 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) == 2024-03-25 18:28:27,203 easyconfig.py:686 INFO setting easyconfig parameter version: value 2.0.0 (type: ) == 2024-03-25 18:28:27,203 easyconfig.py:747 INFO Parsing dependency specifications... == 2024-03-25 18:28:27,203 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:28:27,204 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' == 2024-03-25 18:28:27,204 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) == 2024-03-25 18:28:27,204 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='cassiopeia', github_account='cassiopeia', mpi_cmd_prefix='mpirun -n 1', name='Cassiopeia', nameletter='C', nameletterlower='c', namelower='cassiopeia', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.3', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='2.0.0', version_major='2', version_major_minor='2.0', version_minor='0', versionprefix='', versionsuffix='' == 2024-03-25 18:28:27,205 modules.py:626 INFO Checking whether CMake/3.26.3-foss-2023a exists... == 2024-03-25 18:28:27,205 modules.py:647 INFO Module CMake/3.26.3-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,205 modules.py:654 INFO Result for existence check of CMake/3.26.3-foss-2023a module: False == 2024-03-25 18:28:27,206 modules.py:626 INFO Checking whether CMake/3.26.3-gompi-2023a exists... == 2024-03-25 18:28:27,206 modules.py:647 INFO Module CMake/3.26.3-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,206 modules.py:654 INFO Result for existence check of CMake/3.26.3-gompi-2023a module: False == 2024-03-25 18:28:27,206 modules.py:626 INFO Checking whether CMake/3.26.3-gfbf-2023a exists... == 2024-03-25 18:28:27,206 modules.py:647 INFO Module CMake/3.26.3-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,206 modules.py:654 INFO Result for existence check of CMake/3.26.3-gfbf-2023a module: False == 2024-03-25 18:28:27,206 modules.py:626 INFO Checking whether CMake/3.26.3-GCC-12.3.0 exists... == 2024-03-25 18:28:27,206 modules.py:647 INFO Module CMake/3.26.3-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,207 modules.py:654 INFO Result for existence check of CMake/3.26.3-GCC-12.3.0 module: False == 2024-03-25 18:28:27,207 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,207 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,207 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,207 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,207 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'CMake', 'version': '3.26.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,209 modules.py:626 INFO Checking whether Python/3.11.3-foss-2023a exists... == 2024-03-25 18:28:27,209 modules.py:647 INFO Module Python/3.11.3-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,209 modules.py:654 INFO Result for existence check of Python/3.11.3-foss-2023a module: False == 2024-03-25 18:28:27,209 modules.py:626 INFO Checking whether Python/3.11.3-gompi-2023a exists... == 2024-03-25 18:28:27,209 modules.py:647 INFO Module Python/3.11.3-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,209 modules.py:654 INFO Result for existence check of Python/3.11.3-gompi-2023a module: False == 2024-03-25 18:28:27,209 modules.py:626 INFO Checking whether Python/3.11.3-gfbf-2023a exists... == 2024-03-25 18:28:27,209 modules.py:647 INFO Module Python/3.11.3-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,210 modules.py:654 INFO Result for existence check of Python/3.11.3-gfbf-2023a module: False == 2024-03-25 18:28:27,210 modules.py:626 INFO Checking whether Python/3.11.3-GCC-12.3.0 exists... == 2024-03-25 18:28:27,210 modules.py:647 INFO Module Python/3.11.3-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,210 modules.py:654 INFO Result for existence check of Python/3.11.3-GCC-12.3.0 module: False == 2024-03-25 18:28:27,210 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,210 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,211 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,211 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,211 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.11.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,212 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-foss-2023a exists... == 2024-03-25 18:28:27,212 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,212 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-foss-2023a module: False == 2024-03-25 18:28:27,212 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-gompi-2023a exists... == 2024-03-25 18:28:27,212 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,213 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-gompi-2023a module: False == 2024-03-25 18:28:27,213 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-gfbf-2023a exists... == 2024-03-25 18:28:27,213 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,213 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-gfbf-2023a module: False == 2024-03-25 18:28:27,213 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-GCC-12.3.0 exists... == 2024-03-25 18:28:27,213 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,213 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-GCC-12.3.0 module: False == 2024-03-25 18:28:27,214 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,214 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,214 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,214 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,214 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python-bundle-PyPI', 'version': '2023.06', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,215 modules.py:626 INFO Checking whether Biopython/1.83-gompi-2023a exists... == 2024-03-25 18:28:27,215 modules.py:647 INFO Module Biopython/1.83-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,215 modules.py:654 INFO Result for existence check of Biopython/1.83-gompi-2023a module: False == 2024-03-25 18:28:27,216 modules.py:626 INFO Checking whether Biopython/1.83-gfbf-2023a exists... == 2024-03-25 18:28:27,216 modules.py:647 INFO Module Biopython/1.83-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,216 modules.py:654 INFO Result for existence check of Biopython/1.83-gfbf-2023a module: False == 2024-03-25 18:28:27,216 modules.py:626 INFO Checking whether Biopython/1.83-GCC-12.3.0 exists... == 2024-03-25 18:28:27,216 modules.py:647 INFO Module Biopython/1.83-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,216 modules.py:654 INFO Result for existence check of Biopython/1.83-GCC-12.3.0 module: False == 2024-03-25 18:28:27,216 modules.py:626 INFO Checking whether Biopython/1.83-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,216 modules.py:647 INFO Module Biopython/1.83-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,217 modules.py:654 INFO Result for existence check of Biopython/1.83-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,217 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Biopython', 'version': '1.83', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2023a'} == 2024-03-25 18:28:27,218 modules.py:626 INFO Checking whether scikit-build/0.17.6-foss-2023a exists... == 2024-03-25 18:28:27,218 modules.py:647 INFO Module scikit-build/0.17.6-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,218 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-foss-2023a module: False == 2024-03-25 18:28:27,218 modules.py:626 INFO Checking whether scikit-build/0.17.6-gompi-2023a exists... == 2024-03-25 18:28:27,218 modules.py:647 INFO Module scikit-build/0.17.6-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,219 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-gompi-2023a module: False == 2024-03-25 18:28:27,219 modules.py:626 INFO Checking whether scikit-build/0.17.6-gfbf-2023a exists... == 2024-03-25 18:28:27,219 modules.py:647 INFO Module scikit-build/0.17.6-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,219 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-gfbf-2023a module: False == 2024-03-25 18:28:27,219 modules.py:626 INFO Checking whether scikit-build/0.17.6-GCC-12.3.0 exists... == 2024-03-25 18:28:27,219 modules.py:647 INFO Module scikit-build/0.17.6-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,219 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-GCC-12.3.0 module: False == 2024-03-25 18:28:27,220 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,220 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,220 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,220 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,220 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-build', 'version': '0.17.6', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,221 modules.py:626 INFO Checking whether bokeh/3.2.2-gompi-2023a exists... == 2024-03-25 18:28:27,221 modules.py:647 INFO Module bokeh/3.2.2-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,221 modules.py:654 INFO Result for existence check of bokeh/3.2.2-gompi-2023a module: False == 2024-03-25 18:28:27,222 modules.py:626 INFO Checking whether bokeh/3.2.2-gfbf-2023a exists... == 2024-03-25 18:28:27,222 modules.py:647 INFO Module bokeh/3.2.2-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,222 modules.py:654 INFO Result for existence check of bokeh/3.2.2-gfbf-2023a module: False == 2024-03-25 18:28:27,222 modules.py:626 INFO Checking whether bokeh/3.2.2-GCC-12.3.0 exists... == 2024-03-25 18:28:27,222 modules.py:647 INFO Module bokeh/3.2.2-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,222 modules.py:654 INFO Result for existence check of bokeh/3.2.2-GCC-12.3.0 module: False == 2024-03-25 18:28:27,222 modules.py:626 INFO Checking whether bokeh/3.2.2-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,223 modules.py:647 INFO Module bokeh/3.2.2-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,223 modules.py:654 INFO Result for existence check of bokeh/3.2.2-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,223 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'bokeh', 'version': '3.2.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2023a'} == 2024-03-25 18:28:27,224 modules.py:626 INFO Checking whether matplotlib/3.7.2-foss-2023a exists... == 2024-03-25 18:28:27,224 modules.py:647 INFO Module matplotlib/3.7.2-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,224 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-foss-2023a module: False == 2024-03-25 18:28:27,224 modules.py:626 INFO Checking whether matplotlib/3.7.2-gompi-2023a exists... == 2024-03-25 18:28:27,224 modules.py:647 INFO Module matplotlib/3.7.2-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,225 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-gompi-2023a module: False == 2024-03-25 18:28:27,225 modules.py:626 INFO Checking whether matplotlib/3.7.2-GCC-12.3.0 exists... == 2024-03-25 18:28:27,225 modules.py:647 INFO Module matplotlib/3.7.2-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,225 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-GCC-12.3.0 module: False == 2024-03-25 18:28:27,225 modules.py:626 INFO Checking whether matplotlib/3.7.2-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,225 modules.py:647 INFO Module matplotlib/3.7.2-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,226 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,226 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,226 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,226 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'matplotlib', 'version': '3.7.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'gfbf', 'version': '2023a'} == 2024-03-25 18:28:27,227 modules.py:626 INFO Checking whether networkx/3.1-foss-2023a exists... == 2024-03-25 18:28:27,227 modules.py:647 INFO Module networkx/3.1-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,227 modules.py:654 INFO Result for existence check of networkx/3.1-foss-2023a module: False == 2024-03-25 18:28:27,227 modules.py:626 INFO Checking whether networkx/3.1-gompi-2023a exists... == 2024-03-25 18:28:27,227 modules.py:647 INFO Module networkx/3.1-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,228 modules.py:654 INFO Result for existence check of networkx/3.1-gompi-2023a module: False == 2024-03-25 18:28:27,228 modules.py:626 INFO Checking whether networkx/3.1-GCC-12.3.0 exists... == 2024-03-25 18:28:27,228 modules.py:647 INFO Module networkx/3.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,228 modules.py:654 INFO Result for existence check of networkx/3.1-GCC-12.3.0 module: False == 2024-03-25 18:28:27,228 modules.py:626 INFO Checking whether networkx/3.1-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,228 modules.py:647 INFO Module networkx/3.1-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,229 modules.py:654 INFO Result for existence check of networkx/3.1-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,229 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,229 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,229 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '3.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'gfbf', 'version': '2023a'} == 2024-03-25 18:28:27,230 modules.py:626 INFO Checking whether numba/0.58.1-gompi-2023a exists... == 2024-03-25 18:28:27,230 modules.py:647 INFO Module numba/0.58.1-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,230 modules.py:654 INFO Result for existence check of numba/0.58.1-gompi-2023a module: False == 2024-03-25 18:28:27,231 modules.py:626 INFO Checking whether numba/0.58.1-gfbf-2023a exists... == 2024-03-25 18:28:27,231 modules.py:647 INFO Module numba/0.58.1-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,231 modules.py:654 INFO Result for existence check of numba/0.58.1-gfbf-2023a module: False == 2024-03-25 18:28:27,231 modules.py:626 INFO Checking whether numba/0.58.1-GCC-12.3.0 exists... == 2024-03-25 18:28:27,231 modules.py:647 INFO Module numba/0.58.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,231 modules.py:654 INFO Result for existence check of numba/0.58.1-GCC-12.3.0 module: False == 2024-03-25 18:28:27,231 modules.py:626 INFO Checking whether numba/0.58.1-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,231 modules.py:647 INFO Module numba/0.58.1-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,232 modules.py:654 INFO Result for existence check of numba/0.58.1-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,232 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.58.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2023a'} == 2024-03-25 18:28:27,233 modules.py:626 INFO Checking whether Pysam/0.22.0-foss-2023a exists... == 2024-03-25 18:28:27,233 modules.py:647 INFO Module Pysam/0.22.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,233 modules.py:654 INFO Result for existence check of Pysam/0.22.0-foss-2023a module: False == 2024-03-25 18:28:27,233 modules.py:626 INFO Checking whether Pysam/0.22.0-gompi-2023a exists... == 2024-03-25 18:28:27,233 modules.py:647 INFO Module Pysam/0.22.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,234 modules.py:654 INFO Result for existence check of Pysam/0.22.0-gompi-2023a module: False == 2024-03-25 18:28:27,234 modules.py:626 INFO Checking whether Pysam/0.22.0-gfbf-2023a exists... == 2024-03-25 18:28:27,234 modules.py:647 INFO Module Pysam/0.22.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,234 modules.py:654 INFO Result for existence check of Pysam/0.22.0-gfbf-2023a module: False == 2024-03-25 18:28:27,234 modules.py:626 INFO Checking whether Pysam/0.22.0-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,234 modules.py:647 INFO Module Pysam/0.22.0-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,234 modules.py:654 INFO Result for existence check of Pysam/0.22.0-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,235 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,235 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,235 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,235 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Pysam', 'version': '0.22.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '12.3.0'} == 2024-03-25 18:28:27,236 modules.py:626 INFO Checking whether PyYAML/6.0-foss-2023a exists... == 2024-03-25 18:28:27,236 modules.py:647 INFO Module PyYAML/6.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,236 modules.py:654 INFO Result for existence check of PyYAML/6.0-foss-2023a module: False == 2024-03-25 18:28:27,236 modules.py:626 INFO Checking whether PyYAML/6.0-gompi-2023a exists... == 2024-03-25 18:28:27,236 modules.py:647 INFO Module PyYAML/6.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,237 modules.py:654 INFO Result for existence check of PyYAML/6.0-gompi-2023a module: False == 2024-03-25 18:28:27,237 modules.py:626 INFO Checking whether PyYAML/6.0-gfbf-2023a exists... == 2024-03-25 18:28:27,237 modules.py:647 INFO Module PyYAML/6.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,237 modules.py:654 INFO Result for existence check of PyYAML/6.0-gfbf-2023a module: False == 2024-03-25 18:28:27,237 modules.py:626 INFO Checking whether PyYAML/6.0-GCC-12.3.0 exists... == 2024-03-25 18:28:27,237 modules.py:647 INFO Module PyYAML/6.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,238 modules.py:654 INFO Result for existence check of PyYAML/6.0-GCC-12.3.0 module: False == 2024-03-25 18:28:27,238 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,238 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,238 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,238 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,238 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyYAML', 'version': '6.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,239 modules.py:626 INFO Checking whether typing-extensions/4.9.0-foss-2023a exists... == 2024-03-25 18:28:27,239 modules.py:647 INFO Module typing-extensions/4.9.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,239 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-foss-2023a module: False == 2024-03-25 18:28:27,240 modules.py:626 INFO Checking whether typing-extensions/4.9.0-gompi-2023a exists... == 2024-03-25 18:28:27,240 modules.py:647 INFO Module typing-extensions/4.9.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,240 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-gompi-2023a module: False == 2024-03-25 18:28:27,240 modules.py:626 INFO Checking whether typing-extensions/4.9.0-gfbf-2023a exists... == 2024-03-25 18:28:27,240 modules.py:647 INFO Module typing-extensions/4.9.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,240 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-gfbf-2023a module: False == 2024-03-25 18:28:27,240 modules.py:626 INFO Checking whether typing-extensions/4.9.0-GCC-12.3.0 exists... == 2024-03-25 18:28:27,241 modules.py:647 INFO Module typing-extensions/4.9.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,241 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-GCC-12.3.0 module: False == 2024-03-25 18:28:27,241 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,241 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,241 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,241 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,241 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'typing-extensions', 'version': '4.9.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,242 modules.py:626 INFO Checking whether tqdm/4.66.1-foss-2023a exists... == 2024-03-25 18:28:27,243 modules.py:647 INFO Module tqdm/4.66.1-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,243 modules.py:654 INFO Result for existence check of tqdm/4.66.1-foss-2023a module: False == 2024-03-25 18:28:27,243 modules.py:626 INFO Checking whether tqdm/4.66.1-gompi-2023a exists... == 2024-03-25 18:28:27,243 modules.py:647 INFO Module tqdm/4.66.1-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,243 modules.py:654 INFO Result for existence check of tqdm/4.66.1-gompi-2023a module: False == 2024-03-25 18:28:27,243 modules.py:626 INFO Checking whether tqdm/4.66.1-gfbf-2023a exists... == 2024-03-25 18:28:27,243 modules.py:647 INFO Module tqdm/4.66.1-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,244 modules.py:654 INFO Result for existence check of tqdm/4.66.1-gfbf-2023a module: False == 2024-03-25 18:28:27,244 modules.py:626 INFO Checking whether tqdm/4.66.1-GCC-12.3.0 exists... == 2024-03-25 18:28:27,244 modules.py:647 INFO Module tqdm/4.66.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,244 modules.py:654 INFO Result for existence check of tqdm/4.66.1-GCC-12.3.0 module: False == 2024-03-25 18:28:27,244 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,244 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,244 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,245 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,245 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'tqdm', 'version': '4.66.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,246 modules.py:626 INFO Checking whether hatchling/1.18.0-foss-2023a exists... == 2024-03-25 18:28:27,246 modules.py:647 INFO Module hatchling/1.18.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,246 modules.py:654 INFO Result for existence check of hatchling/1.18.0-foss-2023a module: False == 2024-03-25 18:28:27,246 modules.py:626 INFO Checking whether hatchling/1.18.0-gompi-2023a exists... == 2024-03-25 18:28:27,246 modules.py:647 INFO Module hatchling/1.18.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,246 modules.py:654 INFO Result for existence check of hatchling/1.18.0-gompi-2023a module: False == 2024-03-25 18:28:27,247 modules.py:626 INFO Checking whether hatchling/1.18.0-gfbf-2023a exists... == 2024-03-25 18:28:27,247 modules.py:647 INFO Module hatchling/1.18.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,247 modules.py:654 INFO Result for existence check of hatchling/1.18.0-gfbf-2023a module: False == 2024-03-25 18:28:27,247 modules.py:626 INFO Checking whether hatchling/1.18.0-GCC-12.3.0 exists... == 2024-03-25 18:28:27,247 modules.py:647 INFO Module hatchling/1.18.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,247 modules.py:654 INFO Result for existence check of hatchling/1.18.0-GCC-12.3.0 module: False == 2024-03-25 18:28:27,247 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,248 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,248 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,248 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,248 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'hatchling', 'version': '1.18.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,250 pythonpackage.py:441 INFO Using pip with --no-deps option == 2024-03-25 18:28:27,250 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc47063/eb-78i3uhl1 (previous value: '/tmp/vsc47063/eb-78i3uhl1') == 2024-03-25 18:28:27,250 pythonpackage.py:458 INFO Using /tmp/vsc47063/eb-78i3uhl1 as pip cache directory == 2024-03-25 18:28:27,250 pythonpackage.py:473 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command == 2024-03-25 18:28:27,251 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... == 2024-03-25 18:28:27,252 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') == 2024-03-25 18:28:27,252 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') == 2024-03-25 18:28:27,252 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') == 2024-03-25 18:28:27,252 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') == 2024-03-25 18:28:27,252 modules.py:299 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it == 2024-03-25 18:28:27,253 modules.py:455 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all == 2024-03-25 18:28:27,253 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] == 2024-03-25 18:28:27,254 easyconfig.py:1908 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle == 2024-03-25 18:28:27,254 easyconfig.py:1955 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'Cassiopeia') == 2024-03-25 18:28:27,254 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: easyblock = 'PythonBundle' name = 'Cassiopeia' version = '2.0.0' homepage = 'https://github.com/YosefLab/Cassiopeia' description = """A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction.""" toolchain = {'name': 'foss', 'version': '2023a'} # "Biopython>=1.71", OK # "bokeh>=0.12.15", OK # "cython>=0.29.2", OK pybundle # "ete3>=3.1.1", OK # "hits", OK exts # "itolapi", OK exts # "matplotlib>=2.2.2", OK # "nbconvert>=5.4.0", OK exts # "nbformat>=4.4.0", Ok exts # "networkx>=2.5", OK # "ngs-tools>=1.5.3", OK exts # "numba>=0.51.0", OK # "numpy>=1.19.5", OK # "pandas>=1.1.4", OK # "pysam>=0.14.1", OK # "python-Levenshtein", OK exts # "PyYAML>=3.12", OK # "scipy>=1.2.0", OK # "typing-extensions>=3.7.4", OK # "tqdm>=4", OK builddependencies = [ ('CMake', '3.26.3'), ] dependencies = [ ('Python', '3.11.3'), ('Python-bundle-PyPI', '2023.06'), ('Biopython', '1.83'), ('scikit-build', '0.17.6'), ('bokeh', '3.2.2'), # ('ETE', '3.1.3'), ('matplotlib', '3.7.2'), ('networkx', '3.1'), ('numba', '0.58.1'), ('Pysam', '0.22.0'), ('PyYAML', '6.0'), ('typing-extensions', '4.9.0'), ('tqdm', '4.66.1'), ('hatchling', '1.18.0'), ] use_pip = True sanity_pip_check = True # cleo 2.0.1 has requirement rapidfuzz<3.0.0,>=2.2.0, but you have rapidfuzz 3.7.0. # levenshtein 0.25.0 has requirement rapidfuzz<4.0.0,>=3.1.0, but you have rapidfuzz 2.15.1. exts_list = [ ('hatch_nodejs_version', '0.3.2', { 'checksums': ['8a7828d817b71e50bbbbb01c9bfc0b329657b7900c56846489b9c958de15b54c'], }), ('ngs-tools', '1.8.5', { 'checksums': ['380e236a101c5b1ac3c0fcdbcc908a210179b6ef2a93fbea9f4eb0ec2edc1de0'], }), ('nbformat', '5.10.3', { 'checksums': ['60ed5e910ef7c6264b87d644f276b1b49e24011930deef54605188ddeb211685'], }), ('nbconvert', '7.16.3', { 'checksums': ['a6733b78ce3d47c3f85e504998495b07e6ea9cf9bf6ec1c98dda63ec6ad19142'], }), ('itolapi', '4.1.4', { 'checksums': ['68e87ba51d209da556b0e373b3b0456b644a1a732c193fedbd7785ff37b6a2cb'], }), ('hits', '0.4.0', { 'checksums': ['743bfc1b56ab8fcf9fefacfcad4c1f23e9bafec1b42225709dbe097c8e669383'], }), ('Levenshtein', '0.22.0', { 'modulename': False, 'checksums': ['86d285d770551cb648d4fcfe5243449a479e694e56b65272dc6cbda879012051'], }), ('python-Levenshtein', '0.22.0', { 'modulename': 'Levenshtein', 'checksums': ['6f8e2216fbd4610ccfa1bab2e0052fb23de34c2333c192de08150eeb99717702'], }), (name, version, { # 'test_script': 'make test', 'source_urls': ['https://github.com/YosefLab/Cassiopeia/archive/'], 'sources': [{'download_filename': '%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], 'checksums': ['28ae7495152683f5733222255056a1e7b2f7a51e1cee2f23f0d9f8ae5f4c3742'], }), ] sanity_check_commands = [ "cd %(builddir)s/Cassiopeia/Cassiopeia-* && make test", # failing with: ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ] moduleclass = 'bio' == 2024-03-25 18:28:27,254 parser.py:139 INFO Type checking of easyconfig parameter values passed! == 2024-03-25 18:28:27,255 easyconfig.py:686 INFO setting easyconfig parameter builddependencies: value [('CMake', '3.26.3')] (type: ) == 2024-03-25 18:28:27,255 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.11.3'), ('Python-bundle-PyPI', '2023.06'), ('Biopython', '1.83'), ('scikit-build', '0.17.6'), ('bokeh', '3.2.2'), ('matplotlib', '3.7.2'), ('networkx', '3.1'), ('numba', '0.58.1'), ('Pysam', '0.22.0'), ('PyYAML', '6.0'), ('typing-extensions', '4.9.0'), ('tqdm', '4.66.1'), ('hatchling', '1.18.0')] (type: ) == 2024-03-25 18:28:27,255 easyconfig.py:686 INFO setting easyconfig parameter description: value A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction. (type: ) == 2024-03-25 18:28:27,255 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) == 2024-03-25 18:28:27,255 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('hatch_nodejs_version', '0.3.2', {'checksums': ['8a7828d817b71e50bbbbb01c9bfc0b329657b7900c56846489b9c958de15b54c']}), ('ngs-tools', '1.8.5', {'checksums': ['380e236a101c5b1ac3c0fcdbcc908a210179b6ef2a93fbea9f4eb0ec2edc1de0']}), ('nbformat', '5.10.3', {'checksums': ['60ed5e910ef7c6264b87d644f276b1b49e24011930deef54605188ddeb211685']}), ('nbconvert', '7.16.3', {'checksums': ['a6733b78ce3d47c3f85e504998495b07e6ea9cf9bf6ec1c98dda63ec6ad19142']}), ('itolapi', '4.1.4', {'checksums': ['68e87ba51d209da556b0e373b3b0456b644a1a732c193fedbd7785ff37b6a2cb']}), ('hits', '0.4.0', {'checksums': ['743bfc1b56ab8fcf9fefacfcad4c1f23e9bafec1b42225709dbe097c8e669383']}), ('Levenshtein', '0.22.0', {'modulename': False, 'checksums': ['86d285d770551cb648d4fcfe5243449a479e694e56b65272dc6cbda879012051']}), ('python-Levenshtein', '0.22.0', {'modulename': 'Levenshtein', 'checksums': ['6f8e2216fbd4610ccfa1bab2e0052fb23de34c2333c192de08150eeb99717702']}), ('Cassiopeia', '2.0.0', {'source_urls': ['https://github.com/YosefLab/Cassiopeia/archive/'], 'sources': [{'download_filename': '%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], 'checksums': ['28ae7495152683f5733222255056a1e7b2f7a51e1cee2f23f0d9f8ae5f4c3742']})] (type: ) == 2024-03-25 18:28:27,255 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/YosefLab/Cassiopeia (type: ) == 2024-03-25 18:28:27,255 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value bio (type: ) == 2024-03-25 18:28:27,255 easyconfig.py:686 INFO setting easyconfig parameter name: value Cassiopeia (type: ) == 2024-03-25 18:28:27,255 easyconfig.py:686 INFO setting easyconfig parameter sanity_check_commands: value ['cd %(builddir)s/Cassiopeia/Cassiopeia-* && make test'] (type: ) == 2024-03-25 18:28:27,255 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) == 2024-03-25 18:28:27,255 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2023a'} (type: ) == 2024-03-25 18:28:27,256 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) == 2024-03-25 18:28:27,256 easyconfig.py:686 INFO setting easyconfig parameter version: value 2.0.0 (type: ) == 2024-03-25 18:28:27,256 easyconfig.py:747 INFO Parsing dependency specifications... == 2024-03-25 18:28:27,256 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:28:27,257 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' == 2024-03-25 18:28:27,257 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) == 2024-03-25 18:28:27,257 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='cassiopeia', github_account='cassiopeia', mpi_cmd_prefix='mpirun -n 1', name='Cassiopeia', nameletter='C', nameletterlower='c', namelower='cassiopeia', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.3', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='2.0.0', version_major='2', version_major_minor='2.0', version_minor='0', versionprefix='', versionsuffix='' == 2024-03-25 18:28:27,258 modules.py:626 INFO Checking whether CMake/3.26.3-foss-2023a exists... == 2024-03-25 18:28:27,258 modules.py:647 INFO Module CMake/3.26.3-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,258 modules.py:654 INFO Result for existence check of CMake/3.26.3-foss-2023a module: False == 2024-03-25 18:28:27,259 modules.py:626 INFO Checking whether CMake/3.26.3-gompi-2023a exists... == 2024-03-25 18:28:27,259 modules.py:647 INFO Module CMake/3.26.3-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,259 modules.py:654 INFO Result for existence check of CMake/3.26.3-gompi-2023a module: False == 2024-03-25 18:28:27,259 modules.py:626 INFO Checking whether CMake/3.26.3-gfbf-2023a exists... == 2024-03-25 18:28:27,259 modules.py:647 INFO Module CMake/3.26.3-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,259 modules.py:654 INFO Result for existence check of CMake/3.26.3-gfbf-2023a module: False == 2024-03-25 18:28:27,259 modules.py:626 INFO Checking whether CMake/3.26.3-GCC-12.3.0 exists... == 2024-03-25 18:28:27,260 modules.py:647 INFO Module CMake/3.26.3-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,260 modules.py:654 INFO Result for existence check of CMake/3.26.3-GCC-12.3.0 module: False == 2024-03-25 18:28:27,260 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,260 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,260 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,260 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,260 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'CMake', 'version': '3.26.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,262 modules.py:626 INFO Checking whether Python/3.11.3-foss-2023a exists... == 2024-03-25 18:28:27,262 modules.py:647 INFO Module Python/3.11.3-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,262 modules.py:654 INFO Result for existence check of Python/3.11.3-foss-2023a module: False == 2024-03-25 18:28:27,262 modules.py:626 INFO Checking whether Python/3.11.3-gompi-2023a exists... == 2024-03-25 18:28:27,262 modules.py:647 INFO Module Python/3.11.3-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,262 modules.py:654 INFO Result for existence check of Python/3.11.3-gompi-2023a module: False == 2024-03-25 18:28:27,263 modules.py:626 INFO Checking whether Python/3.11.3-gfbf-2023a exists... == 2024-03-25 18:28:27,263 modules.py:647 INFO Module Python/3.11.3-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,263 modules.py:654 INFO Result for existence check of Python/3.11.3-gfbf-2023a module: False == 2024-03-25 18:28:27,263 modules.py:626 INFO Checking whether Python/3.11.3-GCC-12.3.0 exists... == 2024-03-25 18:28:27,263 modules.py:647 INFO Module Python/3.11.3-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,263 modules.py:654 INFO Result for existence check of Python/3.11.3-GCC-12.3.0 module: False == 2024-03-25 18:28:27,263 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,264 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,264 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,264 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,264 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.11.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,265 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-foss-2023a exists... == 2024-03-25 18:28:27,265 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,265 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-foss-2023a module: False == 2024-03-25 18:28:27,265 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-gompi-2023a exists... == 2024-03-25 18:28:27,265 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,266 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-gompi-2023a module: False == 2024-03-25 18:28:27,266 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-gfbf-2023a exists... == 2024-03-25 18:28:27,266 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,266 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-gfbf-2023a module: False == 2024-03-25 18:28:27,266 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-GCC-12.3.0 exists... == 2024-03-25 18:28:27,266 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,267 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-GCC-12.3.0 module: False == 2024-03-25 18:28:27,267 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,267 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,267 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,267 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,267 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python-bundle-PyPI', 'version': '2023.06', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,268 modules.py:626 INFO Checking whether Biopython/1.83-gompi-2023a exists... == 2024-03-25 18:28:27,268 modules.py:647 INFO Module Biopython/1.83-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,268 modules.py:654 INFO Result for existence check of Biopython/1.83-gompi-2023a module: False == 2024-03-25 18:28:27,269 modules.py:626 INFO Checking whether Biopython/1.83-gfbf-2023a exists... == 2024-03-25 18:28:27,269 modules.py:647 INFO Module Biopython/1.83-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,269 modules.py:654 INFO Result for existence check of Biopython/1.83-gfbf-2023a module: False == 2024-03-25 18:28:27,269 modules.py:626 INFO Checking whether Biopython/1.83-GCC-12.3.0 exists... == 2024-03-25 18:28:27,269 modules.py:647 INFO Module Biopython/1.83-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,269 modules.py:654 INFO Result for existence check of Biopython/1.83-GCC-12.3.0 module: False == 2024-03-25 18:28:27,270 modules.py:626 INFO Checking whether Biopython/1.83-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,270 modules.py:647 INFO Module Biopython/1.83-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,270 modules.py:654 INFO Result for existence check of Biopython/1.83-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,270 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Biopython', 'version': '1.83', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2023a'} == 2024-03-25 18:28:27,271 modules.py:626 INFO Checking whether scikit-build/0.17.6-foss-2023a exists... == 2024-03-25 18:28:27,271 modules.py:647 INFO Module scikit-build/0.17.6-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,271 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-foss-2023a module: False == 2024-03-25 18:28:27,271 modules.py:626 INFO Checking whether scikit-build/0.17.6-gompi-2023a exists... == 2024-03-25 18:28:27,271 modules.py:647 INFO Module scikit-build/0.17.6-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,272 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-gompi-2023a module: False == 2024-03-25 18:28:27,272 modules.py:626 INFO Checking whether scikit-build/0.17.6-gfbf-2023a exists... == 2024-03-25 18:28:27,272 modules.py:647 INFO Module scikit-build/0.17.6-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,272 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-gfbf-2023a module: False == 2024-03-25 18:28:27,272 modules.py:626 INFO Checking whether scikit-build/0.17.6-GCC-12.3.0 exists... == 2024-03-25 18:28:27,272 modules.py:647 INFO Module scikit-build/0.17.6-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,273 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-GCC-12.3.0 module: False == 2024-03-25 18:28:27,273 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,273 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,273 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,273 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,273 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-build', 'version': '0.17.6', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,274 modules.py:626 INFO Checking whether bokeh/3.2.2-gompi-2023a exists... == 2024-03-25 18:28:27,274 modules.py:647 INFO Module bokeh/3.2.2-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,275 modules.py:654 INFO Result for existence check of bokeh/3.2.2-gompi-2023a module: False == 2024-03-25 18:28:27,275 modules.py:626 INFO Checking whether bokeh/3.2.2-gfbf-2023a exists... == 2024-03-25 18:28:27,275 modules.py:647 INFO Module bokeh/3.2.2-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,275 modules.py:654 INFO Result for existence check of bokeh/3.2.2-gfbf-2023a module: False == 2024-03-25 18:28:27,275 modules.py:626 INFO Checking whether bokeh/3.2.2-GCC-12.3.0 exists... == 2024-03-25 18:28:27,275 modules.py:647 INFO Module bokeh/3.2.2-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,275 modules.py:654 INFO Result for existence check of bokeh/3.2.2-GCC-12.3.0 module: False == 2024-03-25 18:28:27,276 modules.py:626 INFO Checking whether bokeh/3.2.2-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,276 modules.py:647 INFO Module bokeh/3.2.2-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,276 modules.py:654 INFO Result for existence check of bokeh/3.2.2-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,276 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'bokeh', 'version': '3.2.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2023a'} == 2024-03-25 18:28:27,277 modules.py:626 INFO Checking whether matplotlib/3.7.2-foss-2023a exists... == 2024-03-25 18:28:27,277 modules.py:647 INFO Module matplotlib/3.7.2-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,277 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-foss-2023a module: False == 2024-03-25 18:28:27,278 modules.py:626 INFO Checking whether matplotlib/3.7.2-gompi-2023a exists... == 2024-03-25 18:28:27,278 modules.py:647 INFO Module matplotlib/3.7.2-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,278 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-gompi-2023a module: False == 2024-03-25 18:28:27,278 modules.py:626 INFO Checking whether matplotlib/3.7.2-GCC-12.3.0 exists... == 2024-03-25 18:28:27,278 modules.py:647 INFO Module matplotlib/3.7.2-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,278 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-GCC-12.3.0 module: False == 2024-03-25 18:28:27,278 modules.py:626 INFO Checking whether matplotlib/3.7.2-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,279 modules.py:647 INFO Module matplotlib/3.7.2-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,279 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,279 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,279 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,279 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'matplotlib', 'version': '3.7.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'gfbf', 'version': '2023a'} == 2024-03-25 18:28:27,280 modules.py:626 INFO Checking whether networkx/3.1-foss-2023a exists... == 2024-03-25 18:28:27,280 modules.py:647 INFO Module networkx/3.1-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,280 modules.py:654 INFO Result for existence check of networkx/3.1-foss-2023a module: False == 2024-03-25 18:28:27,281 modules.py:626 INFO Checking whether networkx/3.1-gompi-2023a exists... == 2024-03-25 18:28:27,281 modules.py:647 INFO Module networkx/3.1-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,281 modules.py:654 INFO Result for existence check of networkx/3.1-gompi-2023a module: False == 2024-03-25 18:28:27,281 modules.py:626 INFO Checking whether networkx/3.1-GCC-12.3.0 exists... == 2024-03-25 18:28:27,281 modules.py:647 INFO Module networkx/3.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,281 modules.py:654 INFO Result for existence check of networkx/3.1-GCC-12.3.0 module: False == 2024-03-25 18:28:27,282 modules.py:626 INFO Checking whether networkx/3.1-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,282 modules.py:647 INFO Module networkx/3.1-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,282 modules.py:654 INFO Result for existence check of networkx/3.1-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,282 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,282 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,282 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '3.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'gfbf', 'version': '2023a'} == 2024-03-25 18:28:27,283 modules.py:626 INFO Checking whether numba/0.58.1-gompi-2023a exists... == 2024-03-25 18:28:27,283 modules.py:647 INFO Module numba/0.58.1-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,284 modules.py:654 INFO Result for existence check of numba/0.58.1-gompi-2023a module: False == 2024-03-25 18:28:27,284 modules.py:626 INFO Checking whether numba/0.58.1-gfbf-2023a exists... == 2024-03-25 18:28:27,284 modules.py:647 INFO Module numba/0.58.1-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,284 modules.py:654 INFO Result for existence check of numba/0.58.1-gfbf-2023a module: False == 2024-03-25 18:28:27,284 modules.py:626 INFO Checking whether numba/0.58.1-GCC-12.3.0 exists... == 2024-03-25 18:28:27,284 modules.py:647 INFO Module numba/0.58.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,284 modules.py:654 INFO Result for existence check of numba/0.58.1-GCC-12.3.0 module: False == 2024-03-25 18:28:27,285 modules.py:626 INFO Checking whether numba/0.58.1-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,285 modules.py:647 INFO Module numba/0.58.1-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,285 modules.py:654 INFO Result for existence check of numba/0.58.1-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,285 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.58.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2023a'} == 2024-03-25 18:28:27,286 modules.py:626 INFO Checking whether Pysam/0.22.0-foss-2023a exists... == 2024-03-25 18:28:27,286 modules.py:647 INFO Module Pysam/0.22.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,286 modules.py:654 INFO Result for existence check of Pysam/0.22.0-foss-2023a module: False == 2024-03-25 18:28:27,286 modules.py:626 INFO Checking whether Pysam/0.22.0-gompi-2023a exists... == 2024-03-25 18:28:27,287 modules.py:647 INFO Module Pysam/0.22.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,287 modules.py:654 INFO Result for existence check of Pysam/0.22.0-gompi-2023a module: False == 2024-03-25 18:28:27,287 modules.py:626 INFO Checking whether Pysam/0.22.0-gfbf-2023a exists... == 2024-03-25 18:28:27,287 modules.py:647 INFO Module Pysam/0.22.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,287 modules.py:654 INFO Result for existence check of Pysam/0.22.0-gfbf-2023a module: False == 2024-03-25 18:28:27,287 modules.py:626 INFO Checking whether Pysam/0.22.0-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,288 modules.py:647 INFO Module Pysam/0.22.0-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,288 modules.py:654 INFO Result for existence check of Pysam/0.22.0-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,288 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,288 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,288 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,288 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Pysam', 'version': '0.22.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '12.3.0'} == 2024-03-25 18:28:27,289 modules.py:626 INFO Checking whether PyYAML/6.0-foss-2023a exists... == 2024-03-25 18:28:27,289 modules.py:647 INFO Module PyYAML/6.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,289 modules.py:654 INFO Result for existence check of PyYAML/6.0-foss-2023a module: False == 2024-03-25 18:28:27,290 modules.py:626 INFO Checking whether PyYAML/6.0-gompi-2023a exists... == 2024-03-25 18:28:27,290 modules.py:647 INFO Module PyYAML/6.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,290 modules.py:654 INFO Result for existence check of PyYAML/6.0-gompi-2023a module: False == 2024-03-25 18:28:27,290 modules.py:626 INFO Checking whether PyYAML/6.0-gfbf-2023a exists... == 2024-03-25 18:28:27,290 modules.py:647 INFO Module PyYAML/6.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,290 modules.py:654 INFO Result for existence check of PyYAML/6.0-gfbf-2023a module: False == 2024-03-25 18:28:27,291 modules.py:626 INFO Checking whether PyYAML/6.0-GCC-12.3.0 exists... == 2024-03-25 18:28:27,291 modules.py:647 INFO Module PyYAML/6.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,291 modules.py:654 INFO Result for existence check of PyYAML/6.0-GCC-12.3.0 module: False == 2024-03-25 18:28:27,291 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,291 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,291 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,291 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,291 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyYAML', 'version': '6.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,292 modules.py:626 INFO Checking whether typing-extensions/4.9.0-foss-2023a exists... == 2024-03-25 18:28:27,293 modules.py:647 INFO Module typing-extensions/4.9.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,293 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-foss-2023a module: False == 2024-03-25 18:28:27,293 modules.py:626 INFO Checking whether typing-extensions/4.9.0-gompi-2023a exists... == 2024-03-25 18:28:27,293 modules.py:647 INFO Module typing-extensions/4.9.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,293 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-gompi-2023a module: False == 2024-03-25 18:28:27,293 modules.py:626 INFO Checking whether typing-extensions/4.9.0-gfbf-2023a exists... == 2024-03-25 18:28:27,293 modules.py:647 INFO Module typing-extensions/4.9.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,294 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-gfbf-2023a module: False == 2024-03-25 18:28:27,294 modules.py:626 INFO Checking whether typing-extensions/4.9.0-GCC-12.3.0 exists... == 2024-03-25 18:28:27,294 modules.py:647 INFO Module typing-extensions/4.9.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,294 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-GCC-12.3.0 module: False == 2024-03-25 18:28:27,294 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,294 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,294 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,295 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,295 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'typing-extensions', 'version': '4.9.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,296 modules.py:626 INFO Checking whether tqdm/4.66.1-foss-2023a exists... == 2024-03-25 18:28:27,296 modules.py:647 INFO Module tqdm/4.66.1-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,296 modules.py:654 INFO Result for existence check of tqdm/4.66.1-foss-2023a module: False == 2024-03-25 18:28:27,296 modules.py:626 INFO Checking whether tqdm/4.66.1-gompi-2023a exists... == 2024-03-25 18:28:27,296 modules.py:647 INFO Module tqdm/4.66.1-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,296 modules.py:654 INFO Result for existence check of tqdm/4.66.1-gompi-2023a module: False == 2024-03-25 18:28:27,297 modules.py:626 INFO Checking whether tqdm/4.66.1-gfbf-2023a exists... == 2024-03-25 18:28:27,297 modules.py:647 INFO Module tqdm/4.66.1-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,297 modules.py:654 INFO Result for existence check of tqdm/4.66.1-gfbf-2023a module: False == 2024-03-25 18:28:27,297 modules.py:626 INFO Checking whether tqdm/4.66.1-GCC-12.3.0 exists... == 2024-03-25 18:28:27,297 modules.py:647 INFO Module tqdm/4.66.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,297 modules.py:654 INFO Result for existence check of tqdm/4.66.1-GCC-12.3.0 module: False == 2024-03-25 18:28:27,298 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,298 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,298 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,298 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,298 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'tqdm', 'version': '4.66.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,299 modules.py:626 INFO Checking whether hatchling/1.18.0-foss-2023a exists... == 2024-03-25 18:28:27,299 modules.py:647 INFO Module hatchling/1.18.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,299 modules.py:654 INFO Result for existence check of hatchling/1.18.0-foss-2023a module: False == 2024-03-25 18:28:27,300 modules.py:626 INFO Checking whether hatchling/1.18.0-gompi-2023a exists... == 2024-03-25 18:28:27,300 modules.py:647 INFO Module hatchling/1.18.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,300 modules.py:654 INFO Result for existence check of hatchling/1.18.0-gompi-2023a module: False == 2024-03-25 18:28:27,300 modules.py:626 INFO Checking whether hatchling/1.18.0-gfbf-2023a exists... == 2024-03-25 18:28:27,300 modules.py:647 INFO Module hatchling/1.18.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,300 modules.py:654 INFO Result for existence check of hatchling/1.18.0-gfbf-2023a module: False == 2024-03-25 18:28:27,300 modules.py:626 INFO Checking whether hatchling/1.18.0-GCC-12.3.0 exists... == 2024-03-25 18:28:27,300 modules.py:647 INFO Module hatchling/1.18.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,301 modules.py:654 INFO Result for existence check of hatchling/1.18.0-GCC-12.3.0 module: False == 2024-03-25 18:28:27,301 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,301 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,301 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,301 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,301 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'hatchling', 'version': '1.18.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,303 pythonpackage.py:441 INFO Using pip with --no-deps option == 2024-03-25 18:28:27,303 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc47063/eb-78i3uhl1 (previous value: '/tmp/vsc47063/eb-78i3uhl1') == 2024-03-25 18:28:27,303 pythonpackage.py:458 INFO Using /tmp/vsc47063/eb-78i3uhl1 as pip cache directory == 2024-03-25 18:28:27,303 pythonpackage.py:473 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command == 2024-03-25 18:28:27,304 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file... == 2024-03-25 18:28:27,305 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') == 2024-03-25 18:28:27,305 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') == 2024-03-25 18:28:27,305 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') == 2024-03-25 18:28:27,305 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no') == 2024-03-25 18:28:27,306 modules.py:299 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it == 2024-03-25 18:28:27,306 modules.py:455 INFO Prepended list of module paths with path used by EasyBuild: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all == 2024-03-25 18:28:27,306 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis'] == 2024-03-25 18:28:27,307 easyconfig.py:1908 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle == 2024-03-25 18:28:27,307 easyconfig.py:1955 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'Cassiopeia') == 2024-03-25 18:28:27,307 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: easyblock = 'PythonBundle' name = 'Cassiopeia' version = '2.0.0' homepage = 'https://github.com/YosefLab/Cassiopeia' description = """A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction.""" toolchain = {'name': 'foss', 'version': '2023a'} # "Biopython>=1.71", OK # "bokeh>=0.12.15", OK # "cython>=0.29.2", OK pybundle # "ete3>=3.1.1", OK # "hits", OK exts # "itolapi", OK exts # "matplotlib>=2.2.2", OK # "nbconvert>=5.4.0", OK exts # "nbformat>=4.4.0", Ok exts # "networkx>=2.5", OK # "ngs-tools>=1.5.3", OK exts # "numba>=0.51.0", OK # "numpy>=1.19.5", OK # "pandas>=1.1.4", OK # "pysam>=0.14.1", OK # "python-Levenshtein", OK exts # "PyYAML>=3.12", OK # "scipy>=1.2.0", OK # "typing-extensions>=3.7.4", OK # "tqdm>=4", OK builddependencies = [ ('CMake', '3.26.3'), ] dependencies = [ ('Python', '3.11.3'), ('Python-bundle-PyPI', '2023.06'), ('Biopython', '1.83'), ('scikit-build', '0.17.6'), ('bokeh', '3.2.2'), # ('ETE', '3.1.3'), ('matplotlib', '3.7.2'), ('networkx', '3.1'), ('numba', '0.58.1'), ('Pysam', '0.22.0'), ('PyYAML', '6.0'), ('typing-extensions', '4.9.0'), ('tqdm', '4.66.1'), ('hatchling', '1.18.0'), ] use_pip = True sanity_pip_check = True # cleo 2.0.1 has requirement rapidfuzz<3.0.0,>=2.2.0, but you have rapidfuzz 3.7.0. # levenshtein 0.25.0 has requirement rapidfuzz<4.0.0,>=3.1.0, but you have rapidfuzz 2.15.1. exts_list = [ ('hatch_nodejs_version', '0.3.2', { 'checksums': ['8a7828d817b71e50bbbbb01c9bfc0b329657b7900c56846489b9c958de15b54c'], }), ('ngs-tools', '1.8.5', { 'checksums': ['380e236a101c5b1ac3c0fcdbcc908a210179b6ef2a93fbea9f4eb0ec2edc1de0'], }), ('nbformat', '5.10.3', { 'checksums': ['60ed5e910ef7c6264b87d644f276b1b49e24011930deef54605188ddeb211685'], }), ('nbconvert', '7.16.3', { 'checksums': ['a6733b78ce3d47c3f85e504998495b07e6ea9cf9bf6ec1c98dda63ec6ad19142'], }), ('itolapi', '4.1.4', { 'checksums': ['68e87ba51d209da556b0e373b3b0456b644a1a732c193fedbd7785ff37b6a2cb'], }), ('hits', '0.4.0', { 'checksums': ['743bfc1b56ab8fcf9fefacfcad4c1f23e9bafec1b42225709dbe097c8e669383'], }), ('Levenshtein', '0.22.0', { 'modulename': False, 'checksums': ['86d285d770551cb648d4fcfe5243449a479e694e56b65272dc6cbda879012051'], }), ('python-Levenshtein', '0.22.0', { 'modulename': 'Levenshtein', 'checksums': ['6f8e2216fbd4610ccfa1bab2e0052fb23de34c2333c192de08150eeb99717702'], }), (name, version, { # 'test_script': 'make test', 'source_urls': ['https://github.com/YosefLab/Cassiopeia/archive/'], 'sources': [{'download_filename': '%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], 'checksums': ['28ae7495152683f5733222255056a1e7b2f7a51e1cee2f23f0d9f8ae5f4c3742'], }), ] sanity_check_commands = [ "cd %(builddir)s/Cassiopeia/Cassiopeia-* && make test", # failing with: ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ] moduleclass = 'bio' == 2024-03-25 18:28:27,308 parser.py:139 INFO Type checking of easyconfig parameter values passed! == 2024-03-25 18:28:27,308 easyconfig.py:686 INFO setting easyconfig parameter builddependencies: value [('CMake', '3.26.3')] (type: ) == 2024-03-25 18:28:27,308 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.11.3'), ('Python-bundle-PyPI', '2023.06'), ('Biopython', '1.83'), ('scikit-build', '0.17.6'), ('bokeh', '3.2.2'), ('matplotlib', '3.7.2'), ('networkx', '3.1'), ('numba', '0.58.1'), ('Pysam', '0.22.0'), ('PyYAML', '6.0'), ('typing-extensions', '4.9.0'), ('tqdm', '4.66.1'), ('hatchling', '1.18.0')] (type: ) == 2024-03-25 18:28:27,308 easyconfig.py:686 INFO setting easyconfig parameter description: value A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction. (type: ) == 2024-03-25 18:28:27,308 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: ) == 2024-03-25 18:28:27,308 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('hatch_nodejs_version', '0.3.2', {'checksums': ['8a7828d817b71e50bbbbb01c9bfc0b329657b7900c56846489b9c958de15b54c']}), ('ngs-tools', '1.8.5', {'checksums': ['380e236a101c5b1ac3c0fcdbcc908a210179b6ef2a93fbea9f4eb0ec2edc1de0']}), ('nbformat', '5.10.3', {'checksums': ['60ed5e910ef7c6264b87d644f276b1b49e24011930deef54605188ddeb211685']}), ('nbconvert', '7.16.3', {'checksums': ['a6733b78ce3d47c3f85e504998495b07e6ea9cf9bf6ec1c98dda63ec6ad19142']}), ('itolapi', '4.1.4', {'checksums': ['68e87ba51d209da556b0e373b3b0456b644a1a732c193fedbd7785ff37b6a2cb']}), ('hits', '0.4.0', {'checksums': ['743bfc1b56ab8fcf9fefacfcad4c1f23e9bafec1b42225709dbe097c8e669383']}), ('Levenshtein', '0.22.0', {'modulename': False, 'checksums': ['86d285d770551cb648d4fcfe5243449a479e694e56b65272dc6cbda879012051']}), ('python-Levenshtein', '0.22.0', {'modulename': 'Levenshtein', 'checksums': ['6f8e2216fbd4610ccfa1bab2e0052fb23de34c2333c192de08150eeb99717702']}), ('Cassiopeia', '2.0.0', {'source_urls': ['https://github.com/YosefLab/Cassiopeia/archive/'], 'sources': [{'download_filename': '%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], 'checksums': ['28ae7495152683f5733222255056a1e7b2f7a51e1cee2f23f0d9f8ae5f4c3742']})] (type: ) == 2024-03-25 18:28:27,308 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/YosefLab/Cassiopeia (type: ) == 2024-03-25 18:28:27,308 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value bio (type: ) == 2024-03-25 18:28:27,309 easyconfig.py:686 INFO setting easyconfig parameter name: value Cassiopeia (type: ) == 2024-03-25 18:28:27,309 easyconfig.py:686 INFO setting easyconfig parameter sanity_check_commands: value ['cd %(builddir)s/Cassiopeia/Cassiopeia-* && make test'] (type: ) == 2024-03-25 18:28:27,309 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: ) == 2024-03-25 18:28:27,309 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2023a'} (type: ) == 2024-03-25 18:28:27,309 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: ) == 2024-03-25 18:28:27,309 easyconfig.py:686 INFO setting easyconfig parameter version: value 2.0.0 (type: ) == 2024-03-25 18:28:27,309 easyconfig.py:747 INFO Parsing dependency specifications... == 2024-03-25 18:28:27,309 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:28:27,310 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' == 2024-03-25 18:28:27,310 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) == 2024-03-25 18:28:27,310 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='cassiopeia', github_account='cassiopeia', mpi_cmd_prefix='mpirun -n 1', name='Cassiopeia', nameletter='C', nameletterlower='c', namelower='cassiopeia', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.3', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='2.0.0', version_major='2', version_major_minor='2.0', version_minor='0', versionprefix='', versionsuffix='' == 2024-03-25 18:28:27,311 modules.py:626 INFO Checking whether CMake/3.26.3-foss-2023a exists... == 2024-03-25 18:28:27,311 modules.py:647 INFO Module CMake/3.26.3-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,312 modules.py:654 INFO Result for existence check of CMake/3.26.3-foss-2023a module: False == 2024-03-25 18:28:27,312 modules.py:626 INFO Checking whether CMake/3.26.3-gompi-2023a exists... == 2024-03-25 18:28:27,312 modules.py:647 INFO Module CMake/3.26.3-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,312 modules.py:654 INFO Result for existence check of CMake/3.26.3-gompi-2023a module: False == 2024-03-25 18:28:27,312 modules.py:626 INFO Checking whether CMake/3.26.3-gfbf-2023a exists... == 2024-03-25 18:28:27,312 modules.py:647 INFO Module CMake/3.26.3-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,313 modules.py:654 INFO Result for existence check of CMake/3.26.3-gfbf-2023a module: False == 2024-03-25 18:28:27,313 modules.py:626 INFO Checking whether CMake/3.26.3-GCC-12.3.0 exists... == 2024-03-25 18:28:27,313 modules.py:647 INFO Module CMake/3.26.3-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,313 modules.py:654 INFO Result for existence check of CMake/3.26.3-GCC-12.3.0 module: False == 2024-03-25 18:28:27,313 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,313 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,313 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,313 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,314 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'CMake', 'version': '3.26.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,315 modules.py:626 INFO Checking whether Python/3.11.3-foss-2023a exists... == 2024-03-25 18:28:27,315 modules.py:647 INFO Module Python/3.11.3-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,315 modules.py:654 INFO Result for existence check of Python/3.11.3-foss-2023a module: False == 2024-03-25 18:28:27,315 modules.py:626 INFO Checking whether Python/3.11.3-gompi-2023a exists... == 2024-03-25 18:28:27,315 modules.py:647 INFO Module Python/3.11.3-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,316 modules.py:654 INFO Result for existence check of Python/3.11.3-gompi-2023a module: False == 2024-03-25 18:28:27,316 modules.py:626 INFO Checking whether Python/3.11.3-gfbf-2023a exists... == 2024-03-25 18:28:27,316 modules.py:647 INFO Module Python/3.11.3-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,316 modules.py:654 INFO Result for existence check of Python/3.11.3-gfbf-2023a module: False == 2024-03-25 18:28:27,316 modules.py:626 INFO Checking whether Python/3.11.3-GCC-12.3.0 exists... == 2024-03-25 18:28:27,316 modules.py:647 INFO Module Python/3.11.3-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,316 modules.py:654 INFO Result for existence check of Python/3.11.3-GCC-12.3.0 module: False == 2024-03-25 18:28:27,317 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,317 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,317 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,317 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,317 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.11.3', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,318 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-foss-2023a exists... == 2024-03-25 18:28:27,318 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,318 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-foss-2023a module: False == 2024-03-25 18:28:27,319 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-gompi-2023a exists... == 2024-03-25 18:28:27,319 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,319 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-gompi-2023a module: False == 2024-03-25 18:28:27,319 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-gfbf-2023a exists... == 2024-03-25 18:28:27,319 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,319 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-gfbf-2023a module: False == 2024-03-25 18:28:27,320 modules.py:626 INFO Checking whether Python-bundle-PyPI/2023.06-GCC-12.3.0 exists... == 2024-03-25 18:28:27,320 modules.py:647 INFO Module Python-bundle-PyPI/2023.06-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,320 modules.py:654 INFO Result for existence check of Python-bundle-PyPI/2023.06-GCC-12.3.0 module: False == 2024-03-25 18:28:27,320 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,320 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,320 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,320 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,320 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python-bundle-PyPI', 'version': '2023.06', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,321 modules.py:626 INFO Checking whether Biopython/1.83-gompi-2023a exists... == 2024-03-25 18:28:27,322 modules.py:647 INFO Module Biopython/1.83-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,322 modules.py:654 INFO Result for existence check of Biopython/1.83-gompi-2023a module: False == 2024-03-25 18:28:27,322 modules.py:626 INFO Checking whether Biopython/1.83-gfbf-2023a exists... == 2024-03-25 18:28:27,322 modules.py:647 INFO Module Biopython/1.83-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,322 modules.py:654 INFO Result for existence check of Biopython/1.83-gfbf-2023a module: False == 2024-03-25 18:28:27,322 modules.py:626 INFO Checking whether Biopython/1.83-GCC-12.3.0 exists... == 2024-03-25 18:28:27,322 modules.py:647 INFO Module Biopython/1.83-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,323 modules.py:654 INFO Result for existence check of Biopython/1.83-GCC-12.3.0 module: False == 2024-03-25 18:28:27,323 modules.py:626 INFO Checking whether Biopython/1.83-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,323 modules.py:647 INFO Module Biopython/1.83-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,323 modules.py:654 INFO Result for existence check of Biopython/1.83-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,323 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Biopython', 'version': '1.83', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2023a'} == 2024-03-25 18:28:27,324 modules.py:626 INFO Checking whether scikit-build/0.17.6-foss-2023a exists... == 2024-03-25 18:28:27,324 modules.py:647 INFO Module scikit-build/0.17.6-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,325 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-foss-2023a module: False == 2024-03-25 18:28:27,325 modules.py:626 INFO Checking whether scikit-build/0.17.6-gompi-2023a exists... == 2024-03-25 18:28:27,325 modules.py:647 INFO Module scikit-build/0.17.6-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,325 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-gompi-2023a module: False == 2024-03-25 18:28:27,325 modules.py:626 INFO Checking whether scikit-build/0.17.6-gfbf-2023a exists... == 2024-03-25 18:28:27,325 modules.py:647 INFO Module scikit-build/0.17.6-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,325 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-gfbf-2023a module: False == 2024-03-25 18:28:27,326 modules.py:626 INFO Checking whether scikit-build/0.17.6-GCC-12.3.0 exists... == 2024-03-25 18:28:27,326 modules.py:647 INFO Module scikit-build/0.17.6-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,326 modules.py:654 INFO Result for existence check of scikit-build/0.17.6-GCC-12.3.0 module: False == 2024-03-25 18:28:27,326 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,326 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,326 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,326 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,326 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'scikit-build', 'version': '0.17.6', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,328 modules.py:626 INFO Checking whether bokeh/3.2.2-gompi-2023a exists... == 2024-03-25 18:28:27,328 modules.py:647 INFO Module bokeh/3.2.2-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,328 modules.py:654 INFO Result for existence check of bokeh/3.2.2-gompi-2023a module: False == 2024-03-25 18:28:27,328 modules.py:626 INFO Checking whether bokeh/3.2.2-gfbf-2023a exists... == 2024-03-25 18:28:27,328 modules.py:647 INFO Module bokeh/3.2.2-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,328 modules.py:654 INFO Result for existence check of bokeh/3.2.2-gfbf-2023a module: False == 2024-03-25 18:28:27,328 modules.py:626 INFO Checking whether bokeh/3.2.2-GCC-12.3.0 exists... == 2024-03-25 18:28:27,329 modules.py:647 INFO Module bokeh/3.2.2-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,329 modules.py:654 INFO Result for existence check of bokeh/3.2.2-GCC-12.3.0 module: False == 2024-03-25 18:28:27,329 modules.py:626 INFO Checking whether bokeh/3.2.2-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,329 modules.py:647 INFO Module bokeh/3.2.2-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,329 modules.py:654 INFO Result for existence check of bokeh/3.2.2-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,329 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'bokeh', 'version': '3.2.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2023a'} == 2024-03-25 18:28:27,330 modules.py:626 INFO Checking whether matplotlib/3.7.2-foss-2023a exists... == 2024-03-25 18:28:27,330 modules.py:647 INFO Module matplotlib/3.7.2-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,331 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-foss-2023a module: False == 2024-03-25 18:28:27,331 modules.py:626 INFO Checking whether matplotlib/3.7.2-gompi-2023a exists... == 2024-03-25 18:28:27,331 modules.py:647 INFO Module matplotlib/3.7.2-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,331 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-gompi-2023a module: False == 2024-03-25 18:28:27,331 modules.py:626 INFO Checking whether matplotlib/3.7.2-GCC-12.3.0 exists... == 2024-03-25 18:28:27,331 modules.py:647 INFO Module matplotlib/3.7.2-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,332 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-GCC-12.3.0 module: False == 2024-03-25 18:28:27,332 modules.py:626 INFO Checking whether matplotlib/3.7.2-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,332 modules.py:647 INFO Module matplotlib/3.7.2-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,332 modules.py:654 INFO Result for existence check of matplotlib/3.7.2-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,332 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,332 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,332 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'matplotlib', 'version': '3.7.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'gfbf', 'version': '2023a'} == 2024-03-25 18:28:27,333 modules.py:626 INFO Checking whether networkx/3.1-foss-2023a exists... == 2024-03-25 18:28:27,333 modules.py:647 INFO Module networkx/3.1-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,334 modules.py:654 INFO Result for existence check of networkx/3.1-foss-2023a module: False == 2024-03-25 18:28:27,334 modules.py:626 INFO Checking whether networkx/3.1-gompi-2023a exists... == 2024-03-25 18:28:27,334 modules.py:647 INFO Module networkx/3.1-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,334 modules.py:654 INFO Result for existence check of networkx/3.1-gompi-2023a module: False == 2024-03-25 18:28:27,334 modules.py:626 INFO Checking whether networkx/3.1-GCC-12.3.0 exists... == 2024-03-25 18:28:27,334 modules.py:647 INFO Module networkx/3.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,335 modules.py:654 INFO Result for existence check of networkx/3.1-GCC-12.3.0 module: False == 2024-03-25 18:28:27,335 modules.py:626 INFO Checking whether networkx/3.1-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,335 modules.py:647 INFO Module networkx/3.1-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,335 modules.py:654 INFO Result for existence check of networkx/3.1-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,335 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,335 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,335 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'networkx', 'version': '3.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'gfbf', 'version': '2023a'} == 2024-03-25 18:28:27,336 modules.py:626 INFO Checking whether numba/0.58.1-gompi-2023a exists... == 2024-03-25 18:28:27,337 modules.py:647 INFO Module numba/0.58.1-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,337 modules.py:654 INFO Result for existence check of numba/0.58.1-gompi-2023a module: False == 2024-03-25 18:28:27,337 modules.py:626 INFO Checking whether numba/0.58.1-gfbf-2023a exists... == 2024-03-25 18:28:27,337 modules.py:647 INFO Module numba/0.58.1-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,337 modules.py:654 INFO Result for existence check of numba/0.58.1-gfbf-2023a module: False == 2024-03-25 18:28:27,337 modules.py:626 INFO Checking whether numba/0.58.1-GCC-12.3.0 exists... == 2024-03-25 18:28:27,337 modules.py:647 INFO Module numba/0.58.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,338 modules.py:654 INFO Result for existence check of numba/0.58.1-GCC-12.3.0 module: False == 2024-03-25 18:28:27,338 modules.py:626 INFO Checking whether numba/0.58.1-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,338 modules.py:647 INFO Module numba/0.58.1-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,338 modules.py:654 INFO Result for existence check of numba/0.58.1-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,338 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'numba', 'version': '0.58.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2023a'} == 2024-03-25 18:28:27,339 modules.py:626 INFO Checking whether Pysam/0.22.0-foss-2023a exists... == 2024-03-25 18:28:27,339 modules.py:647 INFO Module Pysam/0.22.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,339 modules.py:654 INFO Result for existence check of Pysam/0.22.0-foss-2023a module: False == 2024-03-25 18:28:27,340 modules.py:626 INFO Checking whether Pysam/0.22.0-gompi-2023a exists... == 2024-03-25 18:28:27,340 modules.py:647 INFO Module Pysam/0.22.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,340 modules.py:654 INFO Result for existence check of Pysam/0.22.0-gompi-2023a module: False == 2024-03-25 18:28:27,340 modules.py:626 INFO Checking whether Pysam/0.22.0-gfbf-2023a exists... == 2024-03-25 18:28:27,340 modules.py:647 INFO Module Pysam/0.22.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,340 modules.py:654 INFO Result for existence check of Pysam/0.22.0-gfbf-2023a module: False == 2024-03-25 18:28:27,341 modules.py:626 INFO Checking whether Pysam/0.22.0-GCCcore-12.3.0 exists... == 2024-03-25 18:28:27,341 modules.py:647 INFO Module Pysam/0.22.0-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,341 modules.py:654 INFO Result for existence check of Pysam/0.22.0-GCCcore-12.3.0 module: False == 2024-03-25 18:28:27,341 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,341 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,341 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,341 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Pysam', 'version': '0.22.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCC', 'version': '12.3.0'} == 2024-03-25 18:28:27,342 modules.py:626 INFO Checking whether PyYAML/6.0-foss-2023a exists... == 2024-03-25 18:28:27,342 modules.py:647 INFO Module PyYAML/6.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,343 modules.py:654 INFO Result for existence check of PyYAML/6.0-foss-2023a module: False == 2024-03-25 18:28:27,343 modules.py:626 INFO Checking whether PyYAML/6.0-gompi-2023a exists... == 2024-03-25 18:28:27,343 modules.py:647 INFO Module PyYAML/6.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,343 modules.py:654 INFO Result for existence check of PyYAML/6.0-gompi-2023a module: False == 2024-03-25 18:28:27,343 modules.py:626 INFO Checking whether PyYAML/6.0-gfbf-2023a exists... == 2024-03-25 18:28:27,343 modules.py:647 INFO Module PyYAML/6.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,343 modules.py:654 INFO Result for existence check of PyYAML/6.0-gfbf-2023a module: False == 2024-03-25 18:28:27,344 modules.py:626 INFO Checking whether PyYAML/6.0-GCC-12.3.0 exists... == 2024-03-25 18:28:27,344 modules.py:647 INFO Module PyYAML/6.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,344 modules.py:654 INFO Result for existence check of PyYAML/6.0-GCC-12.3.0 module: False == 2024-03-25 18:28:27,344 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,344 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,344 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,344 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,345 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyYAML', 'version': '6.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,346 modules.py:626 INFO Checking whether typing-extensions/4.9.0-foss-2023a exists... == 2024-03-25 18:28:27,346 modules.py:647 INFO Module typing-extensions/4.9.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,346 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-foss-2023a module: False == 2024-03-25 18:28:27,346 modules.py:626 INFO Checking whether typing-extensions/4.9.0-gompi-2023a exists... == 2024-03-25 18:28:27,346 modules.py:647 INFO Module typing-extensions/4.9.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,346 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-gompi-2023a module: False == 2024-03-25 18:28:27,346 modules.py:626 INFO Checking whether typing-extensions/4.9.0-gfbf-2023a exists... == 2024-03-25 18:28:27,347 modules.py:647 INFO Module typing-extensions/4.9.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,347 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-gfbf-2023a module: False == 2024-03-25 18:28:27,347 modules.py:626 INFO Checking whether typing-extensions/4.9.0-GCC-12.3.0 exists... == 2024-03-25 18:28:27,347 modules.py:647 INFO Module typing-extensions/4.9.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,347 modules.py:654 INFO Result for existence check of typing-extensions/4.9.0-GCC-12.3.0 module: False == 2024-03-25 18:28:27,347 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,347 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,348 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,348 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,348 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'typing-extensions', 'version': '4.9.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,349 modules.py:626 INFO Checking whether tqdm/4.66.1-foss-2023a exists... == 2024-03-25 18:28:27,349 modules.py:647 INFO Module tqdm/4.66.1-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,349 modules.py:654 INFO Result for existence check of tqdm/4.66.1-foss-2023a module: False == 2024-03-25 18:28:27,349 modules.py:626 INFO Checking whether tqdm/4.66.1-gompi-2023a exists... == 2024-03-25 18:28:27,349 modules.py:647 INFO Module tqdm/4.66.1-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,350 modules.py:654 INFO Result for existence check of tqdm/4.66.1-gompi-2023a module: False == 2024-03-25 18:28:27,350 modules.py:626 INFO Checking whether tqdm/4.66.1-gfbf-2023a exists... == 2024-03-25 18:28:27,350 modules.py:647 INFO Module tqdm/4.66.1-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,350 modules.py:654 INFO Result for existence check of tqdm/4.66.1-gfbf-2023a module: False == 2024-03-25 18:28:27,350 modules.py:626 INFO Checking whether tqdm/4.66.1-GCC-12.3.0 exists... == 2024-03-25 18:28:27,350 modules.py:647 INFO Module tqdm/4.66.1-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,350 modules.py:654 INFO Result for existence check of tqdm/4.66.1-GCC-12.3.0 module: False == 2024-03-25 18:28:27,351 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,351 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,351 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,351 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,351 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'tqdm', 'version': '4.66.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,352 modules.py:626 INFO Checking whether hatchling/1.18.0-foss-2023a exists... == 2024-03-25 18:28:27,352 modules.py:647 INFO Module hatchling/1.18.0-foss-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,352 modules.py:654 INFO Result for existence check of hatchling/1.18.0-foss-2023a module: False == 2024-03-25 18:28:27,353 modules.py:626 INFO Checking whether hatchling/1.18.0-gompi-2023a exists... == 2024-03-25 18:28:27,353 modules.py:647 INFO Module hatchling/1.18.0-gompi-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,353 modules.py:654 INFO Result for existence check of hatchling/1.18.0-gompi-2023a module: False == 2024-03-25 18:28:27,353 modules.py:626 INFO Checking whether hatchling/1.18.0-gfbf-2023a exists... == 2024-03-25 18:28:27,353 modules.py:647 INFO Module hatchling/1.18.0-gfbf-2023a not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,353 modules.py:654 INFO Result for existence check of hatchling/1.18.0-gfbf-2023a module: False == 2024-03-25 18:28:27,353 modules.py:626 INFO Checking whether hatchling/1.18.0-GCC-12.3.0 exists... == 2024-03-25 18:28:27,354 modules.py:647 INFO Module hatchling/1.18.0-GCC-12.3.0 not found via module avail/show, checking whether it is a wrapper == 2024-03-25 18:28:27,354 modules.py:654 INFO Result for existence check of hatchling/1.18.0-GCC-12.3.0 module: False == 2024-03-25 18:28:27,354 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,354 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,354 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,354 easyconfig.py:2193 INFO Found loaded index for /user/gent/470/vsc47063/easybuild/easybuild-easyconfigs/easybuild/easyconfigs == 2024-03-25 18:28:27,354 easyconfig.py:2369 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'hatchling', 'version': '1.18.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '12.3.0'} == 2024-03-25 18:28:27,356 pythonpackage.py:408 INFO Using default value for expected module name (lowercase software name): 'cassiopeia' == 2024-03-25 18:28:27,356 pythonpackage.py:441 INFO Using pip with --no-deps option == 2024-03-25 18:28:27,356 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/vsc47063/eb-78i3uhl1 (previous value: '/tmp/vsc47063/eb-78i3uhl1') == 2024-03-25 18:28:27,356 pythonpackage.py:458 INFO Using /tmp/vsc47063/eb-78i3uhl1 as pip cache directory == 2024-03-25 18:28:27,356 pythonpackage.py:473 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command == 2024-03-25 18:28:27,747 easyblock.py:1904 INFO Installing extensions sequentially... == 2024-03-25 18:28:27,747 easyblock.py:1910 INFO Starting extension hatch_nodejs_version == 2024-03-25 18:28:27,748 build_log.py:267 INFO installing extension hatch_nodejs_version 0.3.2 (1/9)... == 2024-03-25 18:28:28,152 modules.py:626 INFO Checking whether foss/2023a exists... == 2024-03-25 18:28:28,152 modules.py:634 INFO Module foss/2023a not found in list of available modules, checking via 'module show'... == 2024-03-25 18:28:34,368 modules.py:654 INFO Result for existence check of foss/2023a module: True == 2024-03-25 18:28:34,369 toolchain.py:766 INFO List of toolchain dependency modules and toolchain definition match! == 2024-03-25 18:28:34,373 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64/Intel. == 2024-03-25 18:28:34,388 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/include was not found == 2024-03-25 18:28:34,408 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) == 2024-03-25 18:28:34,408 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) == 2024-03-25 18:28:34,408 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) == 2024-03-25 18:28:34,408 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) == 2024-03-25 18:28:34,408 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previously undefined) == 2024-03-25 18:28:34,408 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previously undefined) == 2024-03-25 18:28:34,408 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) == 2024-03-25 18:28:34,408 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) == 2024-03-25 18:28:34,408 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) == 2024-03-25 18:28:34,408 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) == 2024-03-25 18:28:34,408 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) == 2024-03-25 18:28:34,408 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) == 2024-03-25 18:28:34,408 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) == 2024-03-25 18:28:34,409 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) == 2024-03-25 18:28:34,409 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previously undefined) == 2024-03-25 18:28:34,409 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previously undefined) == 2024-03-25 18:28:34,409 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) == 2024-03-25 18:28:34,409 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) == 2024-03-25 18:28:34,409 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) == 2024-03-25 18:28:34,409 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) == 2024-03-25 18:28:34,409 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) == 2024-03-25 18:28:34,409 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) == 2024-03-25 18:28:34,409 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) == 2024-03-25 18:28:34,409 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) == 2024-03-25 18:28:34,409 environment.py:93 INFO Environment variable CC set to gcc (previously undefined) == 2024-03-25 18:28:34,409 environment.py:93 INFO Environment variable EBVARCC set to gcc (previously undefined) == 2024-03-25 18:28:34,409 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) == 2024-03-25 18:28:34,409 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) == 2024-03-25 18:28:34,410 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) == 2024-03-25 18:28:34,410 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) == 2024-03-25 18:28:34,410 environment.py:93 INFO Environment variable CXX set to g++ (previously undefined) == 2024-03-25 18:28:34,410 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previously undefined) == 2024-03-25 18:28:34,410 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) == 2024-03-25 18:28:34,410 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) == 2024-03-25 18:28:34,410 environment.py:93 INFO Environment variable F77 set to gfortran (previously undefined) == 2024-03-25 18:28:34,410 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previously undefined) == 2024-03-25 18:28:34,410 environment.py:93 INFO Environment variable F90 set to gfortran (previously undefined) == 2024-03-25 18:28:34,410 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previously undefined) == 2024-03-25 18:28:34,410 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) == 2024-03-25 18:28:34,410 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) == 2024-03-25 18:28:34,410 environment.py:93 INFO Environment variable FC set to gfortran (previously undefined) == 2024-03-25 18:28:34,410 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previously undefined) == 2024-03-25 18:28:34,410 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) == 2024-03-25 18:28:34,410 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) == 2024-03-25 18:28:34,411 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) == 2024-03-25 18:28:34,411 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) == 2024-03-25 18:28:34,411 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previously undefined) == 2024-03-25 18:28:34,411 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previously undefined) == 2024-03-25 18:28:34,411 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previously undefined) == 2024-03-25 18:28:34,411 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previously undefined) == 2024-03-25 18:28:34,411 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previously undefined) == 2024-03-25 18:28:34,411 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previously undefined) == 2024-03-25 18:28:34,411 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) == 2024-03-25 18:28:34,411 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) == 2024-03-25 18:28:34,411 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined) == 2024-03-25 18:28:34,411 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined) == 2024-03-25 18:28:34,411 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) == 2024-03-25 18:28:34,411 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) == 2024-03-25 18:28:34,411 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previously undefined) == 2024-03-25 18:28:34,412 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previously undefined) == 2024-03-25 18:28:34,412 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previously undefined) == 2024-03-25 18:28:34,412 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previously undefined) == 2024-03-25 18:28:34,412 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previously undefined) == 2024-03-25 18:28:34,412 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previously undefined) == 2024-03-25 18:28:34,412 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) == 2024-03-25 18:28:34,412 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) == 2024-03-25 18:28:34,412 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined) == 2024-03-25 18:28:34,412 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined) == 2024-03-25 18:28:34,412 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) == 2024-03-25 18:28:34,412 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) == 2024-03-25 18:28:34,412 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previously undefined) == 2024-03-25 18:28:34,412 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) == 2024-03-25 18:28:34,412 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) == 2024-03-25 18:28:34,412 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) == 2024-03-25 18:28:34,412 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previously undefined) == 2024-03-25 18:28:34,413 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previously undefined) == 2024-03-25 18:28:34,413 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) == 2024-03-25 18:28:34,413 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) == 2024-03-25 18:28:34,413 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) == 2024-03-25 18:28:34,413 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) == 2024-03-25 18:28:34,413 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) == 2024-03-25 18:28:34,413 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) == 2024-03-25 18:28:34,413 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) == 2024-03-25 18:28:34,413 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) == 2024-03-25 18:28:34,413 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib (previously undefined) == 2024-03-25 18:28:34,413 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib (previously undefined) == 2024-03-25 18:28:34,413 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previously undefined) == 2024-03-25 18:28:34,413 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previously undefined) == 2024-03-25 18:28:34,413 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previously undefined) == 2024-03-25 18:28:34,413 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previously undefined) == 2024-03-25 18:28:34,414 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined) == 2024-03-25 18:28:34,414 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined) == 2024-03-25 18:28:34,414 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined) == 2024-03-25 18:28:34,414 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined) == 2024-03-25 18:28:34,414 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previously undefined) == 2024-03-25 18:28:34,414 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previously undefined) == 2024-03-25 18:28:34,414 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previously undefined) == 2024-03-25 18:28:34,414 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previously undefined) == 2024-03-25 18:28:34,414 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previously undefined) == 2024-03-25 18:28:34,414 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previously undefined) == 2024-03-25 18:28:34,414 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) == 2024-03-25 18:28:34,414 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) == 2024-03-25 18:28:34,414 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) == 2024-03-25 18:28:34,414 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) == 2024-03-25 18:28:34,414 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) == 2024-03-25 18:28:34,415 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) == 2024-03-25 18:28:34,415 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previously undefined) == 2024-03-25 18:28:34,415 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previously undefined) == 2024-03-25 18:28:34,415 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) == 2024-03-25 18:28:34,415 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) == 2024-03-25 18:28:34,415 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) == 2024-03-25 18:28:34,415 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) == 2024-03-25 18:28:34,415 environment.py:93 INFO Environment variable MPICC set to mpicc (previously undefined) == 2024-03-25 18:28:34,415 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previously undefined) == 2024-03-25 18:28:34,415 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previously undefined) == 2024-03-25 18:28:34,415 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined) == 2024-03-25 18:28:34,415 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previously undefined) == 2024-03-25 18:28:34,415 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined) == 2024-03-25 18:28:34,415 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previously undefined) == 2024-03-25 18:28:34,415 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined) == 2024-03-25 18:28:34,416 environment.py:93 INFO Environment variable MPIFC set to mpifort (previously undefined) == 2024-03-25 18:28:34,416 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined) == 2024-03-25 18:28:34,416 environment.py:93 INFO Environment variable MPI_INC_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include (previously undefined) == 2024-03-25 18:28:34,416 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include (previously undefined) == 2024-03-25 18:28:34,416 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64 (previously undefined) == 2024-03-25 18:28:34,416 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64 (previously undefined) == 2024-03-25 18:28:34,416 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so (previously undefined) == 2024-03-25 18:28:34,416 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so (previously undefined) == 2024-03-25 18:28:34,416 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previously undefined) == 2024-03-25 18:28:34,416 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined) == 2024-03-25 18:28:34,416 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previously undefined) == 2024-03-25 18:28:34,416 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined) == 2024-03-25 18:28:34,416 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previously undefined) == 2024-03-25 18:28:34,416 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined) == 2024-03-25 18:28:34,416 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previously undefined) == 2024-03-25 18:28:34,416 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined) == 2024-03-25 18:28:34,417 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previously undefined) == 2024-03-25 18:28:34,417 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined) == 2024-03-25 18:28:34,417 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previously undefined) == 2024-03-25 18:28:34,417 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined) == 2024-03-25 18:28:34,417 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) == 2024-03-25 18:28:34,417 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) == 2024-03-25 18:28:34,417 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) == 2024-03-25 18:28:34,417 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) == 2024-03-25 18:28:34,417 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previously undefined) == 2024-03-25 18:28:34,417 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previously undefined) == 2024-03-25 18:28:34,417 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib (previously undefined) == 2024-03-25 18:28:34,417 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib (previously undefined) == 2024-03-25 18:28:34,417 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) == 2024-03-25 18:28:34,417 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) == 2024-03-25 18:28:34,417 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) == 2024-03-25 18:28:34,418 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) == 2024-03-25 18:28:34,418 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) == 2024-03-25 18:28:34,418 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) == 2024-03-25 18:28:34,418 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) == 2024-03-25 18:28:34,418 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) == 2024-03-25 18:28:34,468 filetools.py:526 INFO Command python found at /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python == 2024-03-25 18:28:34,468 pythonpackage.py:511 INFO Python command being used: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python == 2024-03-25 18:28:34,468 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:28:35,072 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' == 2024-03-25 18:28:37,985 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:28:38,047 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' == 2024-03-25 18:28:38,247 filetools.py:1911 INFO Creating directory /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/hatch_nodejs_version (parents: True, set_gid: False, sticky: False) == 2024-03-25 18:28:38,249 run.py:247 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/hatch_nodejs_version-0.3.2.tar.gz == 2024-03-25 18:28:38,325 build_log.py:267 INFO configuring... == 2024-03-25 18:28:38,326 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previously undefined) == 2024-03-25 18:28:38,326 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:28:38,386 pythonpackage.py:735 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.11.3 == 2024-03-25 18:28:38,386 pythonpackage.py:747 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it == 2024-03-25 18:28:38,386 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -V; /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' == 2024-03-25 18:28:38,459 build_log.py:267 INFO building... == 2024-03-25 18:28:38,459 build_log.py:267 INFO testing... == 2024-03-25 18:28:38,459 build_log.py:267 INFO installing... == 2024-03-25 18:28:38,459 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:28:38,519 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sysconfig; print(sysconfig.get_default_scheme())' == 2024-03-25 18:28:38,579 pythonpackage.py:269 INFO Active Python installation scheme: posix_prefix == 2024-03-25 18:28:38,579 filetools.py:1911 INFO Creating directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages (parents: True, set_gid: False, sticky: False) == 2024-03-25 18:28:38,580 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python') == 2024-03-25 18:28:38,580 environment.py:93 INFO Environment variable PATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools') == 2024-03-25 18:28:38,580 pythonpackage.py:229 INFO Determining pip version... == 2024-03-25 18:28:38,580 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip --version == 2024-03-25 18:28:43,575 pythonpackage.py:237 INFO Found pip version: 23.1.2 == 2024-03-25 18:28:43,575 pythonpackage.py:605 INFO Found pip version 23.1.2, OK == 2024-03-25 18:28:43,575 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a --no-deps --ignore-installed --no-index --no-build-isolation . == 2024-03-25 18:28:50,552 run.py:687 INFO cmd " /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: Processing /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/hatch_nodejs_version/hatch_nodejs_version-0.3.2 Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: hatch-nodejs-version Building wheel for hatch-nodejs-version (pyproject.toml): started Building wheel for hatch-nodejs-version (pyproject.toml): finished with status 'done' Created wheel for hatch-nodejs-version: filename=hatch_nodejs_version-0.3.2-py3-none-any.whl size=8539 sha256=d73e728f1a262d214afe9c0a40e161013ef0b7a6c78ff843293880f6a46ede79 Stored in directory: /tmp/vsc47063/eb-78i3uhl1/pip/wheels/46/83/16/2ae21368e34402acf6961ffc77b536bbc07689f9b7cd2fbb15 Successfully built hatch-nodejs-version Installing collected packages: hatch-nodejs-version Successfully installed hatch-nodejs-version-0.3.2 == 2024-03-25 18:28:50,552 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:28:50,614 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sysconfig; print(sysconfig.get_default_scheme())' == 2024-03-25 18:28:50,674 pythonpackage.py:269 INFO Active Python installation scheme: posix_prefix == 2024-03-25 18:28:50,675 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:28:50,734 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sysconfig; print(sysconfig.get_default_scheme())' == 2024-03-25 18:28:50,795 pythonpackage.py:269 INFO Active Python installation scheme: posix_prefix == 2024-03-25 18:28:50,795 easyblock.py:2953 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env == 2024-03-25 18:28:50,796 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python') == 2024-03-25 18:28:50,796 environment.py:93 INFO Environment variable PATH set to /apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools (previous value: 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== 2024-03-25 18:28:50,796 build_log.py:267 INFO ... (took 23 secs) == 2024-03-25 18:28:50,796 easyblock.py:1910 INFO Starting extension ngs-tools == 2024-03-25 18:28:50,796 build_log.py:267 INFO installing extension ngs-tools 1.8.5 (2/9)... == 2024-03-25 18:28:51,205 modules.py:626 INFO Checking whether foss/2023a exists... == 2024-03-25 18:28:51,205 modules.py:634 INFO Module foss/2023a not found in list of available modules, checking via 'module show'... == 2024-03-25 18:28:51,205 modules.py:654 INFO Result for existence check of foss/2023a module: True == 2024-03-25 18:28:51,206 toolchain.py:766 INFO List of toolchain dependency modules and toolchain definition match! == 2024-03-25 18:28:51,207 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64/Intel. == 2024-03-25 18:28:51,218 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/include was not found == 2024-03-25 18:28:51,224 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:28:51,224 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:28:51,224 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:28:51,224 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:28:51,224 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:28:51,224 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:28:51,224 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:28:51,224 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:28:51,224 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:28:51,224 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:28:51,224 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:28:51,225 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:28:51,225 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:28:51,225 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:28:51,225 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:28:51,225 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:28:51,225 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:28:51,225 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:28:51,225 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:28:51,225 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:28:51,225 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:28:51,225 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:28:51,225 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:28:51,225 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:28:51,225 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') == 2024-03-25 18:28:51,225 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') == 2024-03-25 18:28:51,226 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:28:51,226 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:28:51,226 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:28:51,226 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:28:51,226 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') == 2024-03-25 18:28:51,226 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') == 2024-03-25 18:28:51,226 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:28:51,226 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:28:51,226 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:28:51,226 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:28:51,226 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:28:51,226 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:28:51,226 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:28:51,226 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:28:51,226 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:28:51,227 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:28:51,227 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:28:51,227 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:28:51,227 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:28:51,227 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:28:51,227 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:28:51,227 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:28:51,227 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:28:51,227 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:28:51,227 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:28:51,227 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:28:51,227 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:28:51,227 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:28:51,227 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:28:51,227 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:28:51,228 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:28:51,228 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:28:51,228 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:28:51,228 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:28:51,228 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:28:51,228 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:28:51,228 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:28:51,228 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:28:51,228 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:28:51,228 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:28:51,228 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:28:51,228 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:28:51,228 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:28:51,228 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:28:51,228 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') == 2024-03-25 18:28:51,228 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') == 2024-03-25 18:28:51,229 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:28:51,229 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:28:51,229 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:28:51,229 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:28:51,229 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:28:51,229 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:28:51,229 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:28:51,229 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:28:51,229 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:28:51,229 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:28:51,229 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:28:51,229 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:28:51,229 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib (previous value: '-L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib') == 2024-03-25 18:28:51,229 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib (previous value: '-L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib') == 2024-03-25 18:28:51,229 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:28:51,230 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:28:51,230 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:28:51,230 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:28:51,230 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') == 2024-03-25 18:28:51,230 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') == 2024-03-25 18:28:51,230 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') == 2024-03-25 18:28:51,230 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') == 2024-03-25 18:28:51,230 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:28:51,230 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:28:51,230 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:28:51,230 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:28:51,230 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:28:51,230 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:28:51,230 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:28:51,230 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:28:51,231 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') == 2024-03-25 18:28:51,231 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') == 2024-03-25 18:28:51,231 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') == 2024-03-25 18:28:51,231 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') == 2024-03-25 18:28:51,231 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previous value: '-lscalapack -lflexiblas -lgfortran -lpthread') == 2024-03-25 18:28:51,231 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previous value: '-lscalapack -lflexiblas -lgfortran -lpthread') == 2024-03-25 18:28:51,231 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:28:51,231 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:28:51,231 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:28:51,231 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:28:51,231 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') == 2024-03-25 18:28:51,231 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') == 2024-03-25 18:28:51,231 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') == 2024-03-25 18:28:51,231 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') == 2024-03-25 18:28:51,231 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:28:51,232 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:28:51,232 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:28:51,232 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:28:51,232 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') == 2024-03-25 18:28:51,232 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') == 2024-03-25 18:28:51,232 environment.py:93 INFO Environment variable MPI_INC_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include') == 2024-03-25 18:28:51,232 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include') == 2024-03-25 18:28:51,232 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64 (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64') == 2024-03-25 18:28:51,232 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64 (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64') == 2024-03-25 18:28:51,232 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so') == 2024-03-25 18:28:51,232 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so') == 2024-03-25 18:28:51,232 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') == 2024-03-25 18:28:51,232 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') == 2024-03-25 18:28:51,232 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') == 2024-03-25 18:28:51,232 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') == 2024-03-25 18:28:51,233 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') == 2024-03-25 18:28:51,233 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') == 2024-03-25 18:28:51,233 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:28:51,233 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:28:51,233 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:28:51,233 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:28:51,233 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:28:51,233 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:28:51,233 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') == 2024-03-25 18:28:51,233 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') == 2024-03-25 18:28:51,233 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') == 2024-03-25 18:28:51,233 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') == 2024-03-25 18:28:51,233 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') == 2024-03-25 18:28:51,233 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') == 2024-03-25 18:28:51,233 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib') == 2024-03-25 18:28:51,233 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib') == 2024-03-25 18:28:51,234 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:28:51,234 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:28:51,234 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:28:51,234 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:28:51,234 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') == 2024-03-25 18:28:51,234 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') == 2024-03-25 18:28:51,234 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') == 2024-03-25 18:28:51,234 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') == 2024-03-25 18:28:51,235 filetools.py:526 INFO Command python found at /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python == 2024-03-25 18:28:51,235 pythonpackage.py:511 INFO Python command being used: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python == 2024-03-25 18:28:51,235 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:28:51,295 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' == 2024-03-25 18:28:51,767 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:28:51,829 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' == 2024-03-25 18:28:52,012 filetools.py:1911 INFO Creating directory /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/ngstools (parents: True, set_gid: False, sticky: False) == 2024-03-25 18:28:52,013 run.py:247 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/ngs-tools-1.8.5.tar.gz == 2024-03-25 18:28:52,588 build_log.py:267 INFO configuring... == 2024-03-25 18:28:52,588 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') == 2024-03-25 18:28:52,588 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:28:52,648 pythonpackage.py:735 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.11.3 == 2024-03-25 18:28:52,649 pythonpackage.py:747 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it == 2024-03-25 18:28:52,649 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -V; /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' == 2024-03-25 18:28:52,722 build_log.py:267 INFO building... == 2024-03-25 18:28:52,722 build_log.py:267 INFO testing... == 2024-03-25 18:28:52,722 build_log.py:267 INFO installing... == 2024-03-25 18:28:52,723 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:28:52,781 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sysconfig; print(sysconfig.get_default_scheme())' == 2024-03-25 18:28:52,841 pythonpackage.py:269 INFO Active Python installation scheme: posix_prefix == 2024-03-25 18:28:52,841 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python') == 2024-03-25 18:28:52,841 environment.py:93 INFO Environment variable PATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools') == 2024-03-25 18:28:52,842 pythonpackage.py:229 INFO Determining pip version... == 2024-03-25 18:28:52,842 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip --version == 2024-03-25 18:28:53,677 pythonpackage.py:237 INFO Found pip version: 23.1.2 == 2024-03-25 18:28:53,678 pythonpackage.py:605 INFO Found pip version 23.1.2, OK == 2024-03-25 18:28:53,678 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a --no-deps --ignore-installed --no-index --no-build-isolation . == 2024-03-25 18:29:00,757 run.py:687 INFO cmd " /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: Processing /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/ngstools/ngs-tools-1.8.5 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Building wheels for collected packages: ngs-tools Building wheel for ngs-tools (setup.py): started Building wheel for ngs-tools (setup.py): finished with status 'done' Created wheel for ngs-tools: filename=ngs_tools-1.8.5-py3-none-any.whl size=45158534 sha256=713e0d16fb4aab5a4489956ff33f1b46daa46116ed19358be89d93bc7b0c28f8 Stored in directory: /tmp/vsc47063/eb-78i3uhl1/pip/wheels/40/4c/7b/4dcbec1c1013f242008f670d9dc97cc6e848f57e38f92a1bcc Successfully built ngs-tools Installing collected packages: ngs-tools Successfully installed ngs-tools-1.8.5 == 2024-03-25 18:29:00,757 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:29:00,820 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sysconfig; print(sysconfig.get_default_scheme())' == 2024-03-25 18:29:00,880 pythonpackage.py:269 INFO Active Python installation scheme: posix_prefix == 2024-03-25 18:29:00,881 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:29:00,941 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sysconfig; print(sysconfig.get_default_scheme())' == 2024-03-25 18:29:01,001 pythonpackage.py:269 INFO Active Python installation scheme: posix_prefix == 2024-03-25 18:29:01,001 easyblock.py:2953 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env == 2024-03-25 18:29:01,001 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python') == 2024-03-25 18:29:01,001 environment.py:93 INFO Environment variable PATH set to /apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools') == 2024-03-25 18:29:01,002 build_log.py:267 INFO ... (took 10 secs) == 2024-03-25 18:29:01,002 easyblock.py:1910 INFO Starting extension nbformat == 2024-03-25 18:29:01,002 build_log.py:267 INFO installing extension nbformat 5.10.3 (3/9)... == 2024-03-25 18:29:01,396 modules.py:626 INFO Checking whether foss/2023a exists... == 2024-03-25 18:29:01,396 modules.py:634 INFO Module foss/2023a not found in list of available modules, checking via 'module show'... == 2024-03-25 18:29:01,396 modules.py:654 INFO Result for existence check of foss/2023a module: True == 2024-03-25 18:29:01,397 toolchain.py:766 INFO List of toolchain dependency modules and toolchain definition match! == 2024-03-25 18:29:01,399 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64/Intel. == 2024-03-25 18:29:01,408 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/include was not found == 2024-03-25 18:29:01,412 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:01,412 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:01,412 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:01,412 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:01,412 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:29:01,412 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:29:01,412 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:01,412 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:01,412 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:01,413 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:01,413 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:01,413 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:01,413 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:01,413 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:01,413 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:29:01,413 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:29:01,413 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:01,413 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:01,413 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:01,413 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:01,413 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:01,413 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:01,413 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:01,413 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:01,414 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') == 2024-03-25 18:29:01,414 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') == 2024-03-25 18:29:01,414 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:01,414 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:01,414 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:01,414 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:01,414 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') == 2024-03-25 18:29:01,414 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') == 2024-03-25 18:29:01,414 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:01,414 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:01,414 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:01,414 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:01,414 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:01,414 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:01,414 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:01,415 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:01,415 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:01,415 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:01,415 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:01,415 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:01,415 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:01,415 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:01,415 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:29:01,415 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:29:01,415 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:29:01,415 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:29:01,415 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:29:01,415 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:29:01,415 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:29:01,415 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:29:01,416 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:29:01,416 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:29:01,416 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:29:01,416 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:29:01,416 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:29:01,416 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:29:01,416 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:29:01,416 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:29:01,416 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:29:01,416 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:29:01,416 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:29:01,416 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:29:01,416 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:29:01,416 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:29:01,416 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:29:01,417 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:29:01,417 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') == 2024-03-25 18:29:01,417 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') == 2024-03-25 18:29:01,417 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:01,417 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:01,417 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:29:01,417 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:29:01,417 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:01,417 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:01,417 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:01,417 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:01,417 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:01,417 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:01,417 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:01,417 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:01,417 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib (previous value: '-L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib') == 2024-03-25 18:29:01,418 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib (previous value: '-L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib') == 2024-03-25 18:29:01,418 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:29:01,418 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:29:01,418 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:01,418 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:01,418 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') == 2024-03-25 18:29:01,418 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') == 2024-03-25 18:29:01,418 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') == 2024-03-25 18:29:01,418 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') == 2024-03-25 18:29:01,418 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:29:01,418 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:29:01,418 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:01,418 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:01,418 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:01,419 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:01,419 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:29:01,419 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:29:01,419 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') == 2024-03-25 18:29:01,419 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') == 2024-03-25 18:29:01,419 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') == 2024-03-25 18:29:01,419 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') == 2024-03-25 18:29:01,419 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previous value: '-lscalapack -lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:01,419 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previous value: '-lscalapack -lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:01,419 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:29:01,419 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:29:01,419 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:29:01,419 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:29:01,419 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') == 2024-03-25 18:29:01,419 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') == 2024-03-25 18:29:01,419 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') == 2024-03-25 18:29:01,420 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') == 2024-03-25 18:29:01,420 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:29:01,420 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:29:01,420 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:29:01,420 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:29:01,420 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') == 2024-03-25 18:29:01,420 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') == 2024-03-25 18:29:01,420 environment.py:93 INFO Environment variable MPI_INC_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include') == 2024-03-25 18:29:01,420 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include') == 2024-03-25 18:29:01,420 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64 (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64') == 2024-03-25 18:29:01,420 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64 (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64') == 2024-03-25 18:29:01,420 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so') == 2024-03-25 18:29:01,420 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so') == 2024-03-25 18:29:01,420 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') == 2024-03-25 18:29:01,420 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') == 2024-03-25 18:29:01,421 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') == 2024-03-25 18:29:01,421 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') == 2024-03-25 18:29:01,421 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') == 2024-03-25 18:29:01,421 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') == 2024-03-25 18:29:01,421 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:01,421 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:01,421 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:01,421 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:01,421 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:01,421 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:01,421 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') == 2024-03-25 18:29:01,421 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') == 2024-03-25 18:29:01,421 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') == 2024-03-25 18:29:01,421 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') == 2024-03-25 18:29:01,421 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') == 2024-03-25 18:29:01,422 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') == 2024-03-25 18:29:01,422 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib') == 2024-03-25 18:29:01,422 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib') == 2024-03-25 18:29:01,422 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:01,422 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:01,422 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:01,422 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:01,422 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:01,422 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:01,422 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:01,422 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:01,423 filetools.py:526 INFO Command python found at /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python == 2024-03-25 18:29:01,423 pythonpackage.py:511 INFO Python command being used: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python == 2024-03-25 18:29:01,423 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:29:01,483 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' == 2024-03-25 18:29:01,665 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:29:01,726 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' == 2024-03-25 18:29:01,910 filetools.py:1911 INFO Creating directory /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/nbformat (parents: True, set_gid: False, sticky: False) == 2024-03-25 18:29:01,911 run.py:247 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/nbformat-5.10.3.tar.gz == 2024-03-25 18:29:01,967 build_log.py:267 INFO configuring... == 2024-03-25 18:29:01,967 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') == 2024-03-25 18:29:01,967 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:29:02,026 pythonpackage.py:735 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.11.3 == 2024-03-25 18:29:02,027 pythonpackage.py:747 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it == 2024-03-25 18:29:02,027 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -V; /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' == 2024-03-25 18:29:02,100 build_log.py:267 INFO building... == 2024-03-25 18:29:02,100 build_log.py:267 INFO testing... == 2024-03-25 18:29:02,101 build_log.py:267 INFO installing... == 2024-03-25 18:29:02,101 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:29:02,160 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sysconfig; print(sysconfig.get_default_scheme())' == 2024-03-25 18:29:02,220 pythonpackage.py:269 INFO Active Python installation scheme: posix_prefix == 2024-03-25 18:29:02,221 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python') == 2024-03-25 18:29:02,221 environment.py:93 INFO Environment variable PATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools') == 2024-03-25 18:29:02,221 pythonpackage.py:229 INFO Determining pip version... == 2024-03-25 18:29:02,221 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip --version == 2024-03-25 18:29:02,593 pythonpackage.py:237 INFO Found pip version: 23.1.2 == 2024-03-25 18:29:02,593 pythonpackage.py:605 INFO Found pip version 23.1.2, OK == 2024-03-25 18:29:02,593 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a --no-deps --ignore-installed --no-index --no-build-isolation . == 2024-03-25 18:29:03,840 run.py:687 INFO cmd " /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: Processing /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/nbformat/nbformat-5.10.3 Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: nbformat Building wheel for nbformat (pyproject.toml): started Building wheel for nbformat (pyproject.toml): finished with status 'done' Created wheel for nbformat: filename=nbformat-5.10.3-py3-none-any.whl size=78439 sha256=c432e7b85b305d7f1f37c92f39a9756aecc864aed36dc7197c1bed777511326d Stored in directory: /tmp/vsc47063/eb-78i3uhl1/pip/wheels/8b/5e/31/4637afb4736d17bd13abac1fab5d945e5f500619bde0dc32ce Successfully built nbformat Installing collected packages: nbformat Successfully installed nbformat-5.10.3 == 2024-03-25 18:29:03,840 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:29:03,902 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sysconfig; print(sysconfig.get_default_scheme())' == 2024-03-25 18:29:03,963 pythonpackage.py:269 INFO Active Python installation scheme: posix_prefix == 2024-03-25 18:29:03,963 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:29:04,022 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sysconfig; print(sysconfig.get_default_scheme())' == 2024-03-25 18:29:04,082 pythonpackage.py:269 INFO Active Python installation scheme: posix_prefix == 2024-03-25 18:29:04,082 easyblock.py:2953 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env == 2024-03-25 18:29:04,082 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python') == 2024-03-25 18:29:04,082 environment.py:93 INFO Environment variable PATH set to /apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools') == 2024-03-25 18:29:04,083 build_log.py:267 INFO ... (took 3 secs) == 2024-03-25 18:29:04,083 easyblock.py:1910 INFO Starting extension nbconvert == 2024-03-25 18:29:04,083 build_log.py:267 INFO installing extension nbconvert 7.16.3 (4/9)... == 2024-03-25 18:29:04,476 modules.py:626 INFO Checking whether foss/2023a exists... == 2024-03-25 18:29:04,476 modules.py:634 INFO Module foss/2023a not found in list of available modules, checking via 'module show'... == 2024-03-25 18:29:04,476 modules.py:654 INFO Result for existence check of foss/2023a module: True == 2024-03-25 18:29:04,477 toolchain.py:766 INFO List of toolchain dependency modules and toolchain definition match! == 2024-03-25 18:29:04,478 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64/Intel. == 2024-03-25 18:29:04,486 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/include was not found == 2024-03-25 18:29:04,491 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:04,491 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:04,491 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:04,491 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:04,491 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:29:04,491 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:29:04,491 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:04,491 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:04,491 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:04,491 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:04,492 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:04,492 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:04,492 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:04,492 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:04,492 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:29:04,492 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:29:04,492 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:04,492 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:04,492 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:04,492 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:04,492 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:04,492 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:04,492 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:04,492 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:04,492 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') == 2024-03-25 18:29:04,493 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') == 2024-03-25 18:29:04,493 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:04,493 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:04,493 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:04,493 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:04,493 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') == 2024-03-25 18:29:04,493 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') == 2024-03-25 18:29:04,493 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:04,493 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:04,493 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:04,493 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:04,493 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:04,493 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:04,493 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:04,493 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:04,494 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:04,494 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:04,494 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:04,494 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:04,494 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:04,494 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:04,494 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:29:04,494 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:29:04,494 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:29:04,494 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:29:04,494 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:29:04,494 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:29:04,494 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:29:04,494 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:29:04,494 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:29:04,494 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:29:04,495 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:29:04,495 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:29:04,495 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:29:04,495 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:29:04,495 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:29:04,495 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:29:04,495 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:29:04,495 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:29:04,495 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:29:04,495 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:29:04,495 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:29:04,495 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:29:04,495 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:29:04,495 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:29:04,495 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') == 2024-03-25 18:29:04,496 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') == 2024-03-25 18:29:04,496 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:04,496 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:04,496 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:29:04,496 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:29:04,496 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:04,496 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:04,496 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:04,496 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:04,496 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:04,496 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:04,496 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:04,496 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:04,496 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib (previous value: '-L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib') == 2024-03-25 18:29:04,496 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib (previous value: '-L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib') == 2024-03-25 18:29:04,497 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:29:04,497 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:29:04,497 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:04,497 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:04,497 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') == 2024-03-25 18:29:04,497 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') == 2024-03-25 18:29:04,497 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') == 2024-03-25 18:29:04,497 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') == 2024-03-25 18:29:04,497 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:29:04,497 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:29:04,497 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:04,497 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:04,497 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:04,497 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:04,497 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:29:04,498 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:29:04,498 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') == 2024-03-25 18:29:04,498 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') == 2024-03-25 18:29:04,498 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') == 2024-03-25 18:29:04,498 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') == 2024-03-25 18:29:04,498 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previous value: '-lscalapack -lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:04,498 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previous value: '-lscalapack -lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:04,498 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:29:04,498 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:29:04,498 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:29:04,498 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:29:04,498 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') == 2024-03-25 18:29:04,498 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') == 2024-03-25 18:29:04,498 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') == 2024-03-25 18:29:04,498 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') == 2024-03-25 18:29:04,499 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:29:04,499 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:29:04,499 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:29:04,499 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:29:04,499 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') == 2024-03-25 18:29:04,499 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') == 2024-03-25 18:29:04,499 environment.py:93 INFO Environment variable MPI_INC_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include') == 2024-03-25 18:29:04,499 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include') == 2024-03-25 18:29:04,499 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64 (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64') == 2024-03-25 18:29:04,499 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64 (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64') == 2024-03-25 18:29:04,499 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so') == 2024-03-25 18:29:04,499 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so') == 2024-03-25 18:29:04,499 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') == 2024-03-25 18:29:04,499 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') == 2024-03-25 18:29:04,499 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') == 2024-03-25 18:29:04,500 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') == 2024-03-25 18:29:04,500 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') == 2024-03-25 18:29:04,500 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') == 2024-03-25 18:29:04,500 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:04,500 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:04,500 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:04,500 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:04,500 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:04,500 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:04,500 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') == 2024-03-25 18:29:04,500 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') == 2024-03-25 18:29:04,500 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') == 2024-03-25 18:29:04,500 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') == 2024-03-25 18:29:04,500 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') == 2024-03-25 18:29:04,500 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') == 2024-03-25 18:29:04,501 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib') == 2024-03-25 18:29:04,501 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib') == 2024-03-25 18:29:04,501 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:04,501 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:04,501 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:04,501 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:04,501 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:04,501 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:04,501 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:04,501 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:04,502 filetools.py:526 INFO Command python found at /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python == 2024-03-25 18:29:04,502 pythonpackage.py:511 INFO Python command being used: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python == 2024-03-25 18:29:04,502 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:29:04,562 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' == 2024-03-25 18:29:04,745 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:29:04,806 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' == 2024-03-25 18:29:04,984 filetools.py:1911 INFO Creating directory /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/nbconvert (parents: True, set_gid: False, sticky: False) == 2024-03-25 18:29:04,985 run.py:247 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/nbconvert-7.16.3.tar.gz == 2024-03-25 18:29:05,137 build_log.py:267 INFO configuring... == 2024-03-25 18:29:05,137 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') == 2024-03-25 18:29:05,137 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:29:05,197 pythonpackage.py:735 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.11.3 == 2024-03-25 18:29:05,198 pythonpackage.py:747 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it == 2024-03-25 18:29:05,198 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -V; /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' == 2024-03-25 18:29:05,270 build_log.py:267 INFO building... == 2024-03-25 18:29:05,271 build_log.py:267 INFO testing... == 2024-03-25 18:29:05,271 build_log.py:267 INFO installing... == 2024-03-25 18:29:05,271 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:29:05,331 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sysconfig; print(sysconfig.get_default_scheme())' == 2024-03-25 18:29:05,391 pythonpackage.py:269 INFO Active Python installation scheme: posix_prefix == 2024-03-25 18:29:05,391 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python') == 2024-03-25 18:29:05,391 environment.py:93 INFO Environment variable PATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools') == 2024-03-25 18:29:05,391 pythonpackage.py:229 INFO Determining pip version... == 2024-03-25 18:29:05,392 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip --version == 2024-03-25 18:29:05,740 pythonpackage.py:237 INFO Found pip version: 23.1.2 == 2024-03-25 18:29:05,741 pythonpackage.py:605 INFO Found pip version 23.1.2, OK == 2024-03-25 18:29:05,741 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a --no-deps --ignore-installed --no-index --no-build-isolation . == 2024-03-25 18:29:06,997 run.py:687 INFO cmd " /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: Processing /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/nbconvert/nbconvert-7.16.3 Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: nbconvert Building wheel for nbconvert (pyproject.toml): started Building wheel for nbconvert (pyproject.toml): finished with status 'done' Created wheel for nbconvert: filename=nbconvert-7.16.3-py3-none-any.whl size=257348 sha256=37890e996e91712c52c680a1705c8a43b1fc054538600b466959736ddcbaf402 Stored in directory: /tmp/vsc47063/eb-78i3uhl1/pip/wheels/9c/9e/35/eda75bb961ff16fc9be2c18d7751a7ea60d4510179a038b5fc Successfully built nbconvert Installing collected packages: nbconvert Successfully installed nbconvert-7.16.3 == 2024-03-25 18:29:06,998 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:29:07,066 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sysconfig; print(sysconfig.get_default_scheme())' == 2024-03-25 18:29:07,127 pythonpackage.py:269 INFO Active Python installation scheme: posix_prefix == 2024-03-25 18:29:07,127 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:29:07,186 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sysconfig; print(sysconfig.get_default_scheme())' == 2024-03-25 18:29:07,246 pythonpackage.py:269 INFO Active Python installation scheme: posix_prefix == 2024-03-25 18:29:07,247 easyblock.py:2953 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env == 2024-03-25 18:29:07,247 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python') == 2024-03-25 18:29:07,247 environment.py:93 INFO Environment variable PATH set to /apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools') == 2024-03-25 18:29:07,247 build_log.py:267 INFO ... (took 3 secs) == 2024-03-25 18:29:07,247 easyblock.py:1910 INFO Starting extension itolapi == 2024-03-25 18:29:07,247 build_log.py:267 INFO installing extension itolapi 4.1.4 (5/9)... == 2024-03-25 18:29:07,641 modules.py:626 INFO Checking whether foss/2023a exists... == 2024-03-25 18:29:07,641 modules.py:634 INFO Module foss/2023a not found in list of available modules, checking via 'module show'... == 2024-03-25 18:29:07,641 modules.py:654 INFO Result for existence check of foss/2023a module: True == 2024-03-25 18:29:07,642 toolchain.py:766 INFO List of toolchain dependency modules and toolchain definition match! == 2024-03-25 18:29:07,643 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64/Intel. == 2024-03-25 18:29:07,652 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/include was not found == 2024-03-25 18:29:07,656 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:07,657 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:07,657 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:07,657 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:07,657 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:29:07,657 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:29:07,657 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:07,657 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:07,657 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:07,657 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:07,657 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:07,657 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:07,657 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:07,657 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:07,657 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:29:07,658 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:29:07,658 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:07,658 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:07,658 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:07,658 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:07,658 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:07,658 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:07,658 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:07,658 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:07,658 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') == 2024-03-25 18:29:07,658 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') == 2024-03-25 18:29:07,658 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:07,658 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:07,658 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:07,658 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:07,659 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') == 2024-03-25 18:29:07,659 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') == 2024-03-25 18:29:07,659 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:07,659 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:07,659 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:07,659 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:07,659 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:07,659 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:07,659 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:07,659 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:07,659 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:07,659 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:07,659 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:07,659 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:07,659 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:07,660 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:07,660 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:29:07,660 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:29:07,660 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:29:07,660 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:29:07,660 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:29:07,660 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:29:07,660 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:29:07,660 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:29:07,660 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:29:07,660 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:29:07,660 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:29:07,660 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:29:07,660 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:29:07,660 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:29:07,661 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:29:07,661 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:29:07,661 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:29:07,661 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:29:07,661 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:29:07,661 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:29:07,661 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:29:07,661 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:29:07,661 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:29:07,661 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:29:07,661 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') == 2024-03-25 18:29:07,661 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') == 2024-03-25 18:29:07,661 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:07,661 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:07,661 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:29:07,662 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:29:07,662 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:07,662 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:07,662 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:07,662 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:07,662 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:07,662 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:07,662 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:07,662 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:07,662 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib (previous value: '-L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib') == 2024-03-25 18:29:07,662 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib (previous value: '-L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib') == 2024-03-25 18:29:07,662 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:29:07,662 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:29:07,662 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:07,662 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:07,663 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') == 2024-03-25 18:29:07,663 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') == 2024-03-25 18:29:07,663 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') == 2024-03-25 18:29:07,663 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') == 2024-03-25 18:29:07,663 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:29:07,663 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:29:07,663 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:07,663 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:07,663 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:07,663 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:07,663 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:29:07,663 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:29:07,663 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') == 2024-03-25 18:29:07,663 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') == 2024-03-25 18:29:07,663 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') == 2024-03-25 18:29:07,663 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') == 2024-03-25 18:29:07,664 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previous value: '-lscalapack -lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:07,664 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previous value: '-lscalapack -lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:07,664 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:29:07,664 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:29:07,664 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:29:07,664 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:29:07,664 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') == 2024-03-25 18:29:07,664 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') == 2024-03-25 18:29:07,664 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') == 2024-03-25 18:29:07,664 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') == 2024-03-25 18:29:07,664 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:29:07,664 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:29:07,664 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:29:07,664 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:29:07,664 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') == 2024-03-25 18:29:07,665 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') == 2024-03-25 18:29:07,665 environment.py:93 INFO Environment variable MPI_INC_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include') == 2024-03-25 18:29:07,665 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include') == 2024-03-25 18:29:07,665 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64 (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64') == 2024-03-25 18:29:07,665 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64 (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64') == 2024-03-25 18:29:07,665 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so') == 2024-03-25 18:29:07,665 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so') == 2024-03-25 18:29:07,665 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') == 2024-03-25 18:29:07,665 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') == 2024-03-25 18:29:07,665 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') == 2024-03-25 18:29:07,665 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') == 2024-03-25 18:29:07,665 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') == 2024-03-25 18:29:07,665 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') == 2024-03-25 18:29:07,665 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:07,665 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:07,666 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:07,666 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:07,666 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:07,666 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:07,666 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') == 2024-03-25 18:29:07,666 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') == 2024-03-25 18:29:07,666 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') == 2024-03-25 18:29:07,666 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') == 2024-03-25 18:29:07,666 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') == 2024-03-25 18:29:07,666 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') == 2024-03-25 18:29:07,666 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib') == 2024-03-25 18:29:07,666 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib') == 2024-03-25 18:29:07,666 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:07,666 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:07,666 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:07,667 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:07,667 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:07,667 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:07,667 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:07,667 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:07,667 filetools.py:526 INFO Command python found at /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python == 2024-03-25 18:29:07,667 pythonpackage.py:511 INFO Python command being used: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python == 2024-03-25 18:29:07,668 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:29:07,728 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' == 2024-03-25 18:29:07,910 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:29:07,970 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' == 2024-03-25 18:29:08,150 filetools.py:1911 INFO Creating directory /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/itolapi (parents: True, set_gid: False, sticky: False) == 2024-03-25 18:29:08,151 run.py:247 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/itolapi-4.1.4.tar.gz == 2024-03-25 18:29:08,203 build_log.py:267 INFO configuring... == 2024-03-25 18:29:08,203 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') == 2024-03-25 18:29:08,203 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:29:08,263 pythonpackage.py:735 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.11.3 == 2024-03-25 18:29:08,263 pythonpackage.py:747 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it == 2024-03-25 18:29:08,263 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -V; /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' == 2024-03-25 18:29:08,336 build_log.py:267 INFO building... == 2024-03-25 18:29:08,336 build_log.py:267 INFO testing... == 2024-03-25 18:29:08,336 build_log.py:267 INFO installing... == 2024-03-25 18:29:08,337 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:29:08,396 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sysconfig; print(sysconfig.get_default_scheme())' == 2024-03-25 18:29:08,456 pythonpackage.py:269 INFO Active Python installation scheme: posix_prefix == 2024-03-25 18:29:08,456 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python') == 2024-03-25 18:29:08,457 environment.py:93 INFO Environment variable PATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools') == 2024-03-25 18:29:08,457 pythonpackage.py:229 INFO Determining pip version... == 2024-03-25 18:29:08,457 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip --version == 2024-03-25 18:29:08,845 pythonpackage.py:237 INFO Found pip version: 23.1.2 == 2024-03-25 18:29:08,845 pythonpackage.py:605 INFO Found pip version 23.1.2, OK == 2024-03-25 18:29:08,845 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a --no-deps --ignore-installed --no-index --no-build-isolation . == 2024-03-25 18:29:13,646 run.py:687 INFO cmd " /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: Processing /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/itolapi/itolapi-4.1.4 Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: itolapi Building wheel for itolapi (pyproject.toml): started Building wheel for itolapi (pyproject.toml): finished with status 'done' Created wheel for itolapi: filename=itolapi-4.1.4-py3-none-any.whl size=7267 sha256=80dad14bd0f1d3f9ccc05b5eac90ae4c45bd020cd31cfd714829444421905c6a Stored in directory: /tmp/vsc47063/eb-78i3uhl1/pip/wheels/79/f2/85/1f668620cfb0462db1316ffc43dababb3c70a9c2210b679689 Successfully built itolapi Installing collected packages: itolapi Successfully installed itolapi-4.1.4 == 2024-03-25 18:29:13,646 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:29:13,709 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sysconfig; print(sysconfig.get_default_scheme())' == 2024-03-25 18:29:13,769 pythonpackage.py:269 INFO Active Python installation scheme: posix_prefix == 2024-03-25 18:29:13,770 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:29:13,828 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sysconfig; print(sysconfig.get_default_scheme())' == 2024-03-25 18:29:13,888 pythonpackage.py:269 INFO Active Python installation scheme: posix_prefix == 2024-03-25 18:29:13,889 easyblock.py:2953 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env == 2024-03-25 18:29:13,889 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python') == 2024-03-25 18:29:13,889 environment.py:93 INFO Environment variable PATH set to /apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools') == 2024-03-25 18:29:13,889 build_log.py:267 INFO ... (took 6 secs) == 2024-03-25 18:29:13,889 easyblock.py:1910 INFO Starting extension hits == 2024-03-25 18:29:13,889 build_log.py:267 INFO installing extension hits 0.4.0 (6/9)... == 2024-03-25 18:29:14,299 modules.py:626 INFO Checking whether foss/2023a exists... == 2024-03-25 18:29:14,300 modules.py:634 INFO Module foss/2023a not found in list of available modules, checking via 'module show'... == 2024-03-25 18:29:14,300 modules.py:654 INFO Result for existence check of foss/2023a module: True == 2024-03-25 18:29:14,301 toolchain.py:766 INFO List of toolchain dependency modules and toolchain definition match! == 2024-03-25 18:29:14,303 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64/Intel. == 2024-03-25 18:29:14,312 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/include was not found == 2024-03-25 18:29:14,317 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:14,317 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:14,317 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:14,318 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:14,318 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:29:14,318 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:29:14,318 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:14,318 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:14,318 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:14,318 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:14,318 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:14,318 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:14,318 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:14,318 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:14,318 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:29:14,318 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:29:14,318 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:14,319 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:14,319 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:14,319 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:14,319 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:14,319 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:14,319 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:14,319 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:14,319 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') == 2024-03-25 18:29:14,319 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') == 2024-03-25 18:29:14,319 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:14,319 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:14,319 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:14,319 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:14,319 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') == 2024-03-25 18:29:14,319 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') == 2024-03-25 18:29:14,320 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:14,320 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:14,320 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:14,320 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:14,320 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:14,320 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:14,320 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:14,320 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:14,320 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:14,320 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:14,320 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:14,320 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:14,320 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:14,320 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:14,320 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:29:14,321 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:29:14,321 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:29:14,321 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:29:14,321 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:29:14,321 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:29:14,321 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:29:14,321 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:29:14,321 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:29:14,321 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:29:14,321 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:29:14,321 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:29:14,321 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:29:14,321 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:29:14,321 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:29:14,321 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:29:14,322 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:29:14,322 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:29:14,322 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:29:14,322 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:29:14,322 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:29:14,322 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:29:14,322 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:29:14,322 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:29:14,322 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') == 2024-03-25 18:29:14,322 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') == 2024-03-25 18:29:14,322 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:14,322 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:14,322 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:29:14,322 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:29:14,322 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:14,322 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:14,323 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:14,323 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:14,323 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:14,323 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:14,323 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:14,323 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:14,323 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib (previous value: '-L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib') == 2024-03-25 18:29:14,323 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib (previous value: '-L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib') == 2024-03-25 18:29:14,323 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:29:14,323 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:29:14,323 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:14,323 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:14,323 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') == 2024-03-25 18:29:14,323 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') == 2024-03-25 18:29:14,324 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') == 2024-03-25 18:29:14,324 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') == 2024-03-25 18:29:14,324 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:29:14,324 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:29:14,324 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:14,324 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:14,324 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:14,324 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:14,324 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:29:14,324 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:29:14,324 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') == 2024-03-25 18:29:14,324 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') == 2024-03-25 18:29:14,324 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') == 2024-03-25 18:29:14,324 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') == 2024-03-25 18:29:14,324 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previous value: '-lscalapack -lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:14,325 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previous value: '-lscalapack -lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:14,325 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:29:14,325 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:29:14,325 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:29:14,325 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:29:14,325 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') == 2024-03-25 18:29:14,325 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') == 2024-03-25 18:29:14,325 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') == 2024-03-25 18:29:14,325 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') == 2024-03-25 18:29:14,325 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:29:14,325 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:29:14,325 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:29:14,325 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:29:14,325 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') == 2024-03-25 18:29:14,325 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') == 2024-03-25 18:29:14,325 environment.py:93 INFO Environment variable MPI_INC_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include') == 2024-03-25 18:29:14,326 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include') == 2024-03-25 18:29:14,326 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64 (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64') == 2024-03-25 18:29:14,326 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64 (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64') == 2024-03-25 18:29:14,326 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so') == 2024-03-25 18:29:14,326 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so') == 2024-03-25 18:29:14,326 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') == 2024-03-25 18:29:14,326 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') == 2024-03-25 18:29:14,326 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') == 2024-03-25 18:29:14,326 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') == 2024-03-25 18:29:14,326 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') == 2024-03-25 18:29:14,326 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') == 2024-03-25 18:29:14,326 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:14,326 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:14,326 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:14,327 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:14,327 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:14,327 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:14,327 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') == 2024-03-25 18:29:14,327 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') == 2024-03-25 18:29:14,327 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') == 2024-03-25 18:29:14,327 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') == 2024-03-25 18:29:14,327 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') == 2024-03-25 18:29:14,327 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') == 2024-03-25 18:29:14,327 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib') == 2024-03-25 18:29:14,327 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib') == 2024-03-25 18:29:14,327 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:14,327 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:14,327 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:14,327 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:14,328 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:14,328 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:14,328 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:14,328 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:14,328 filetools.py:526 INFO Command python found at /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python == 2024-03-25 18:29:14,329 pythonpackage.py:511 INFO Python command being used: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python == 2024-03-25 18:29:14,329 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:29:14,389 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' == 2024-03-25 18:29:14,569 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:29:14,630 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' == 2024-03-25 18:29:14,811 filetools.py:1911 INFO Creating directory /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/hits (parents: True, set_gid: False, sticky: False) == 2024-03-25 18:29:14,812 run.py:247 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/hits-0.4.0.tar.gz == 2024-03-25 18:29:14,933 build_log.py:267 INFO configuring... == 2024-03-25 18:29:14,933 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') == 2024-03-25 18:29:14,933 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:29:14,992 pythonpackage.py:735 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.11.3 == 2024-03-25 18:29:14,993 pythonpackage.py:747 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it == 2024-03-25 18:29:14,993 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -V; /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' == 2024-03-25 18:29:15,066 build_log.py:267 INFO building... == 2024-03-25 18:29:15,066 build_log.py:267 INFO testing... == 2024-03-25 18:29:15,066 build_log.py:267 INFO installing... == 2024-03-25 18:29:15,066 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:29:15,125 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sysconfig; print(sysconfig.get_default_scheme())' == 2024-03-25 18:29:15,185 pythonpackage.py:269 INFO Active Python installation scheme: posix_prefix == 2024-03-25 18:29:15,186 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python') == 2024-03-25 18:29:15,186 environment.py:93 INFO Environment variable PATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools') == 2024-03-25 18:29:15,186 pythonpackage.py:229 INFO Determining pip version... == 2024-03-25 18:29:15,186 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip --version == 2024-03-25 18:29:16,309 pythonpackage.py:237 INFO Found pip version: 23.1.2 == 2024-03-25 18:29:16,310 pythonpackage.py:605 INFO Found pip version 23.1.2, OK == 2024-03-25 18:29:16,310 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a --no-deps --ignore-installed --no-index --no-build-isolation . == 2024-03-25 18:29:43,383 run.py:687 INFO cmd " /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: Processing /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/hits/hits-0.4.0 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Building wheels for collected packages: hits Building wheel for hits (setup.py): started Building wheel for hits (setup.py): finished with status 'done' Created wheel for hits: filename=hits-0.4.0-cp311-cp311-linux_x86_64.whl size=1878598 sha256=0319917ca506e10be3a0952ab9ab5202a900caf7bc9ef4b1209f408b26e6066b Stored in directory: /tmp/vsc47063/eb-78i3uhl1/pip/wheels/9f/f3/9b/ed8026f40950cbe2520df53a77c9a94a4310dd4149caea8708 Successfully built hits Installing collected packages: hits Successfully installed hits-0.4.0 == 2024-03-25 18:29:43,383 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:29:43,522 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sysconfig; print(sysconfig.get_default_scheme())' == 2024-03-25 18:29:43,582 pythonpackage.py:269 INFO Active Python installation scheme: posix_prefix == 2024-03-25 18:29:43,583 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:29:43,642 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sysconfig; print(sysconfig.get_default_scheme())' == 2024-03-25 18:29:43,703 pythonpackage.py:269 INFO Active Python installation scheme: posix_prefix == 2024-03-25 18:29:43,703 easyblock.py:2953 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env == 2024-03-25 18:29:43,703 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python') == 2024-03-25 18:29:43,703 environment.py:93 INFO Environment variable PATH set to /apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools') == 2024-03-25 18:29:43,703 build_log.py:267 INFO ... (took 29 secs) == 2024-03-25 18:29:43,703 easyblock.py:1910 INFO Starting extension Levenshtein == 2024-03-25 18:29:43,704 build_log.py:267 INFO installing extension Levenshtein 0.22.0 (7/9)... == 2024-03-25 18:29:44,113 modules.py:626 INFO Checking whether foss/2023a exists... == 2024-03-25 18:29:44,113 modules.py:634 INFO Module foss/2023a not found in list of available modules, checking via 'module show'... == 2024-03-25 18:29:44,113 modules.py:654 INFO Result for existence check of foss/2023a module: True == 2024-03-25 18:29:44,116 toolchain.py:766 INFO List of toolchain dependency modules and toolchain definition match! == 2024-03-25 18:29:44,117 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64/Intel. == 2024-03-25 18:29:44,126 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/include was not found == 2024-03-25 18:29:44,130 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:44,130 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:44,130 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:44,130 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:44,130 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:29:44,130 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:29:44,130 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:44,131 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:44,131 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:44,131 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:44,131 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:44,131 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:44,131 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:44,131 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:44,131 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:29:44,131 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:29:44,131 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:44,131 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:44,131 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:44,131 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:44,131 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:44,131 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:44,132 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:44,132 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:44,132 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') == 2024-03-25 18:29:44,132 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') == 2024-03-25 18:29:44,132 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:44,132 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:44,132 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:44,132 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:44,132 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') == 2024-03-25 18:29:44,132 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') == 2024-03-25 18:29:44,132 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:44,132 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:44,132 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:44,132 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:44,132 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:44,133 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:44,133 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:44,133 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:44,133 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:44,133 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:44,133 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:44,133 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:44,133 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:44,133 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:29:44,133 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:29:44,133 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:29:44,133 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:29:44,133 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:29:44,133 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:29:44,133 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:29:44,133 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:29:44,134 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:29:44,134 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:29:44,134 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:29:44,134 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:29:44,134 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:29:44,134 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:29:44,134 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:29:44,134 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:29:44,134 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:29:44,134 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:29:44,134 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:29:44,134 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:29:44,134 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:29:44,134 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:29:44,134 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:29:44,135 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:29:44,135 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:29:44,135 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') == 2024-03-25 18:29:44,135 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') == 2024-03-25 18:29:44,135 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:44,135 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:29:44,135 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:29:44,135 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:29:44,135 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:44,135 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:44,135 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:44,135 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:44,135 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:44,135 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:44,135 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:44,136 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:44,136 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib (previous value: '-L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib') == 2024-03-25 18:29:44,136 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib (previous value: '-L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib') == 2024-03-25 18:29:44,136 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:29:44,136 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:29:44,136 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:44,136 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:44,136 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') == 2024-03-25 18:29:44,136 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') == 2024-03-25 18:29:44,136 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') == 2024-03-25 18:29:44,136 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') == 2024-03-25 18:29:44,136 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:29:44,136 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:29:44,136 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:44,136 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:44,137 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:44,137 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:44,137 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:29:44,137 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:29:44,137 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') == 2024-03-25 18:29:44,137 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') == 2024-03-25 18:29:44,137 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') == 2024-03-25 18:29:44,137 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') == 2024-03-25 18:29:44,137 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previous value: '-lscalapack -lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:44,137 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previous value: '-lscalapack -lflexiblas -lgfortran -lpthread') == 2024-03-25 18:29:44,137 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:29:44,137 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:29:44,137 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:29:44,137 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:29:44,137 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') == 2024-03-25 18:29:44,138 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') == 2024-03-25 18:29:44,138 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') == 2024-03-25 18:29:44,138 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') == 2024-03-25 18:29:44,138 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:29:44,138 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:29:44,138 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:29:44,138 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:29:44,138 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') == 2024-03-25 18:29:44,138 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') == 2024-03-25 18:29:44,138 environment.py:93 INFO Environment variable MPI_INC_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include') == 2024-03-25 18:29:44,138 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include') == 2024-03-25 18:29:44,138 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64 (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64') == 2024-03-25 18:29:44,138 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64 (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64') == 2024-03-25 18:29:44,138 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so') == 2024-03-25 18:29:44,138 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so') == 2024-03-25 18:29:44,139 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') == 2024-03-25 18:29:44,139 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') == 2024-03-25 18:29:44,139 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') == 2024-03-25 18:29:44,139 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') == 2024-03-25 18:29:44,139 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') == 2024-03-25 18:29:44,139 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') == 2024-03-25 18:29:44,139 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:44,139 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:44,139 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:44,139 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:44,139 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:44,139 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:29:44,139 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') == 2024-03-25 18:29:44,139 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') == 2024-03-25 18:29:44,139 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') == 2024-03-25 18:29:44,139 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') == 2024-03-25 18:29:44,140 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') == 2024-03-25 18:29:44,140 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') == 2024-03-25 18:29:44,140 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib') == 2024-03-25 18:29:44,140 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib') == 2024-03-25 18:29:44,140 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:44,140 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:29:44,140 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:44,140 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:29:44,140 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:44,140 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') == 2024-03-25 18:29:44,140 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:44,140 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') == 2024-03-25 18:29:44,141 filetools.py:526 INFO Command python found at /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python == 2024-03-25 18:29:44,141 pythonpackage.py:511 INFO Python command being used: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python == 2024-03-25 18:29:44,141 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:29:44,201 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' == 2024-03-25 18:29:44,629 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:29:44,699 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' == 2024-03-25 18:29:44,883 filetools.py:1911 INFO Creating directory /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Levenshtein (parents: True, set_gid: False, sticky: False) == 2024-03-25 18:29:44,883 run.py:247 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/Levenshtein-0.22.0.tar.gz == 2024-03-25 18:29:44,962 build_log.py:267 INFO configuring... == 2024-03-25 18:29:44,963 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') == 2024-03-25 18:29:44,963 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:29:45,022 pythonpackage.py:735 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.11.3 == 2024-03-25 18:29:45,022 pythonpackage.py:747 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it == 2024-03-25 18:29:45,023 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -V; /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' == 2024-03-25 18:29:45,095 build_log.py:267 INFO building... == 2024-03-25 18:29:45,096 build_log.py:267 INFO testing... == 2024-03-25 18:29:45,096 build_log.py:267 INFO installing... == 2024-03-25 18:29:45,096 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:29:45,155 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sysconfig; print(sysconfig.get_default_scheme())' == 2024-03-25 18:29:45,215 pythonpackage.py:269 INFO Active Python installation scheme: posix_prefix == 2024-03-25 18:29:45,216 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python') == 2024-03-25 18:29:45,216 environment.py:93 INFO Environment variable PATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools') == 2024-03-25 18:29:45,216 pythonpackage.py:229 INFO Determining pip version... == 2024-03-25 18:29:45,216 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip --version == 2024-03-25 18:29:46,869 pythonpackage.py:237 INFO Found pip version: 23.1.2 == 2024-03-25 18:29:46,870 pythonpackage.py:605 INFO Found pip version 23.1.2, OK == 2024-03-25 18:29:46,870 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a --no-deps --ignore-installed --no-index --no-build-isolation . == 2024-03-25 18:30:21,466 run.py:687 INFO cmd " /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: Processing /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Levenshtein/Levenshtein-0.22.0 Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: Levenshtein Building wheel for Levenshtein (pyproject.toml): started Building wheel for Levenshtein (pyproject.toml): finished with status 'done' Created wheel for Levenshtein: filename=Levenshtein-0.22.0-cp311-cp311-linux_x86_64.whl size=145242 sha256=08c23fe7adb7a2e59508b8113e000162f6fac3f1db59eb94b2ed20feb6ed14aa Stored in directory: /tmp/vsc47063/eb-78i3uhl1/pip/wheels/bf/9c/11/375d8987ffe8bde831daa36dbe6de8dc17e631e3e25fb36f29 Successfully built Levenshtein Installing collected packages: Levenshtein Successfully installed Levenshtein-0.22.0 == 2024-03-25 18:30:21,466 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:30:21,529 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sysconfig; print(sysconfig.get_default_scheme())' == 2024-03-25 18:30:21,590 pythonpackage.py:269 INFO Active Python installation scheme: posix_prefix == 2024-03-25 18:30:21,590 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:30:21,649 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sysconfig; print(sysconfig.get_default_scheme())' == 2024-03-25 18:30:21,710 pythonpackage.py:269 INFO Active Python installation scheme: posix_prefix == 2024-03-25 18:30:21,710 easyblock.py:2953 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env == 2024-03-25 18:30:21,710 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python') == 2024-03-25 18:30:21,710 environment.py:93 INFO Environment variable PATH set to /apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools') == 2024-03-25 18:30:21,710 build_log.py:267 INFO ... (took 38 secs) == 2024-03-25 18:30:21,710 easyblock.py:1910 INFO Starting extension python-Levenshtein == 2024-03-25 18:30:21,711 build_log.py:267 INFO installing extension python-Levenshtein 0.22.0 (8/9)... == 2024-03-25 18:30:22,097 modules.py:626 INFO Checking whether foss/2023a exists... == 2024-03-25 18:30:22,098 modules.py:634 INFO Module foss/2023a not found in list of available modules, checking via 'module show'... == 2024-03-25 18:30:22,098 modules.py:654 INFO Result for existence check of foss/2023a module: True == 2024-03-25 18:30:22,099 toolchain.py:766 INFO List of toolchain dependency modules and toolchain definition match! == 2024-03-25 18:30:22,100 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64/Intel. == 2024-03-25 18:30:22,108 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/include was not found == 2024-03-25 18:30:22,112 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:30:22,113 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:30:22,113 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:30:22,113 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:30:22,113 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:30:22,113 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:30:22,113 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:30:22,113 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:30:22,113 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:30:22,113 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:30:22,113 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:30:22,113 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:30:22,113 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:30:22,113 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:30:22,113 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:30:22,114 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:30:22,114 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:30:22,114 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:30:22,114 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:30:22,114 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:30:22,114 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:30:22,114 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:30:22,114 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:30:22,114 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:30:22,114 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') == 2024-03-25 18:30:22,114 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') == 2024-03-25 18:30:22,114 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:30:22,114 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:30:22,114 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:30:22,115 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:30:22,115 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') == 2024-03-25 18:30:22,115 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') == 2024-03-25 18:30:22,115 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:30:22,115 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:30:22,115 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:30:22,115 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:30:22,115 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:30:22,115 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:30:22,115 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:30:22,115 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:30:22,115 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:30:22,115 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:30:22,115 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:30:22,115 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:30:22,115 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:30:22,116 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:30:22,116 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:30:22,116 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:30:22,116 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:30:22,116 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:30:22,116 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:30:22,116 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:30:22,116 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:30:22,116 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:30:22,116 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:30:22,116 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:30:22,116 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:30:22,116 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:30:22,116 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:30:22,116 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:30:22,117 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:30:22,117 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:30:22,117 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:30:22,117 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:30:22,117 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:30:22,117 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:30:22,117 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:30:22,117 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:30:22,117 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:30:22,117 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:30:22,117 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') == 2024-03-25 18:30:22,117 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') == 2024-03-25 18:30:22,117 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:30:22,117 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:30:22,117 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:30:22,118 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:30:22,118 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:30:22,118 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:30:22,118 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:30:22,118 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:30:22,118 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:30:22,118 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:30:22,118 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:30:22,118 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:30:22,118 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib (previous value: '-L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib') == 2024-03-25 18:30:22,118 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib (previous value: '-L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib') == 2024-03-25 18:30:22,118 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:30:22,118 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:30:22,118 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:30:22,118 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:30:22,119 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') == 2024-03-25 18:30:22,119 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') == 2024-03-25 18:30:22,119 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') == 2024-03-25 18:30:22,119 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') == 2024-03-25 18:30:22,119 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:30:22,119 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:30:22,119 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:30:22,119 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:30:22,119 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:30:22,119 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:30:22,119 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:30:22,119 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:30:22,119 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') == 2024-03-25 18:30:22,119 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') == 2024-03-25 18:30:22,119 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') == 2024-03-25 18:30:22,120 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') == 2024-03-25 18:30:22,120 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previous value: '-lscalapack -lflexiblas -lgfortran -lpthread') == 2024-03-25 18:30:22,120 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previous value: '-lscalapack -lflexiblas -lgfortran -lpthread') == 2024-03-25 18:30:22,120 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:30:22,120 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:30:22,120 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:30:22,120 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:30:22,120 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') == 2024-03-25 18:30:22,120 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') == 2024-03-25 18:30:22,120 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') == 2024-03-25 18:30:22,120 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') == 2024-03-25 18:30:22,120 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:30:22,120 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:30:22,120 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:30:22,120 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:30:22,120 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') == 2024-03-25 18:30:22,121 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') == 2024-03-25 18:30:22,121 environment.py:93 INFO Environment variable MPI_INC_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include') == 2024-03-25 18:30:22,121 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include') == 2024-03-25 18:30:22,121 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64 (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64') == 2024-03-25 18:30:22,121 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64 (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64') == 2024-03-25 18:30:22,121 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so') == 2024-03-25 18:30:22,121 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so') == 2024-03-25 18:30:22,121 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') == 2024-03-25 18:30:22,121 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') == 2024-03-25 18:30:22,121 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') == 2024-03-25 18:30:22,121 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') == 2024-03-25 18:30:22,121 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') == 2024-03-25 18:30:22,121 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') == 2024-03-25 18:30:22,121 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:30:22,121 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:30:22,122 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:30:22,122 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:30:22,122 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:30:22,122 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:30:22,122 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') == 2024-03-25 18:30:22,122 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') == 2024-03-25 18:30:22,122 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') == 2024-03-25 18:30:22,122 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') == 2024-03-25 18:30:22,122 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') == 2024-03-25 18:30:22,122 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') == 2024-03-25 18:30:22,122 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib') == 2024-03-25 18:30:22,122 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib') == 2024-03-25 18:30:22,122 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:30:22,122 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:30:22,122 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:30:22,123 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:30:22,123 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') == 2024-03-25 18:30:22,123 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') == 2024-03-25 18:30:22,123 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') == 2024-03-25 18:30:22,123 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') == 2024-03-25 18:30:22,123 filetools.py:526 INFO Command python found at /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python == 2024-03-25 18:30:22,123 pythonpackage.py:511 INFO Python command being used: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python == 2024-03-25 18:30:22,124 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:30:22,184 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' == 2024-03-25 18:30:22,371 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:30:22,431 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' == 2024-03-25 18:30:22,615 filetools.py:1911 INFO Creating directory /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/pythonLevenshtein (parents: True, set_gid: False, sticky: False) == 2024-03-25 18:30:22,616 run.py:247 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/python-Levenshtein-0.22.0.tar.gz == 2024-03-25 18:30:22,713 build_log.py:267 INFO configuring... == 2024-03-25 18:30:22,713 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') == 2024-03-25 18:30:22,713 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:30:22,773 pythonpackage.py:735 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.11.3 == 2024-03-25 18:30:22,773 pythonpackage.py:747 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it == 2024-03-25 18:30:22,773 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -V; /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' == 2024-03-25 18:30:22,847 build_log.py:267 INFO building... == 2024-03-25 18:30:22,847 build_log.py:267 INFO testing... == 2024-03-25 18:30:22,847 build_log.py:267 INFO installing... == 2024-03-25 18:30:22,847 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:30:22,907 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sysconfig; print(sysconfig.get_default_scheme())' == 2024-03-25 18:30:22,966 pythonpackage.py:269 INFO Active Python installation scheme: posix_prefix == 2024-03-25 18:30:22,967 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python') == 2024-03-25 18:30:22,967 environment.py:93 INFO Environment variable PATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools') == 2024-03-25 18:30:22,967 pythonpackage.py:229 INFO Determining pip version... == 2024-03-25 18:30:22,967 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip --version == 2024-03-25 18:30:23,687 pythonpackage.py:237 INFO Found pip version: 23.1.2 == 2024-03-25 18:30:23,687 pythonpackage.py:605 INFO Found pip version 23.1.2, OK == 2024-03-25 18:30:23,688 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a --no-deps --ignore-installed --no-index --no-build-isolation . == 2024-03-25 18:30:25,830 run.py:687 INFO cmd " /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: Processing /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/pythonLevenshtein/python-Levenshtein-0.22.0 Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: python-Levenshtein Building wheel for python-Levenshtein (pyproject.toml): started Building wheel for python-Levenshtein (pyproject.toml): finished with status 'done' Created wheel for python-Levenshtein: filename=python_Levenshtein-0.22.0-py3-none-any.whl size=9426 sha256=95ea826469bbd7cfecebb209955ff1799c652477deda8d5325f137a37179d2c0 Stored in directory: /tmp/vsc47063/eb-78i3uhl1/pip/wheels/ee/19/03/a186afdfc99279177d787600dff67d8891bcdb41aadca3a164 Successfully built python-Levenshtein Installing collected packages: python-Levenshtein Successfully installed python-Levenshtein-0.22.0 == 2024-03-25 18:30:25,831 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:30:25,891 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sysconfig; print(sysconfig.get_default_scheme())' == 2024-03-25 18:30:25,952 pythonpackage.py:269 INFO Active Python installation scheme: posix_prefix == 2024-03-25 18:30:25,952 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:30:26,011 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sysconfig; print(sysconfig.get_default_scheme())' == 2024-03-25 18:30:26,072 pythonpackage.py:269 INFO Active Python installation scheme: posix_prefix == 2024-03-25 18:30:26,072 easyblock.py:2953 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env == 2024-03-25 18:30:26,072 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python') == 2024-03-25 18:30:26,072 environment.py:93 INFO Environment variable PATH set to /apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools') == 2024-03-25 18:30:26,072 build_log.py:267 INFO ... (took 4 secs) == 2024-03-25 18:30:26,072 easyblock.py:1910 INFO Starting extension Cassiopeia == 2024-03-25 18:30:26,073 build_log.py:267 INFO installing extension Cassiopeia 2.0.0 (9/9)... == 2024-03-25 18:30:26,476 modules.py:626 INFO Checking whether foss/2023a exists... == 2024-03-25 18:30:26,477 modules.py:634 INFO Module foss/2023a not found in list of available modules, checking via 'module show'... == 2024-03-25 18:30:26,477 modules.py:654 INFO Result for existence check of foss/2023a module: True == 2024-03-25 18:30:26,478 toolchain.py:766 INFO List of toolchain dependency modules and toolchain definition match! == 2024-03-25 18:30:26,479 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64/Intel. == 2024-03-25 18:30:26,487 variables.py:203 WARNING flags_for_subdirs: directory /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/include was not found == 2024-03-25 18:30:26,491 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:30:26,492 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:30:26,492 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:30:26,492 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:30:26,492 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:30:26,492 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:30:26,492 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:30:26,492 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:30:26,492 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:30:26,492 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:30:26,492 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:30:26,492 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:30:26,492 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:30:26,492 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:30:26,493 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:30:26,493 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:30:26,493 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:30:26,493 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:30:26,493 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:30:26,493 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:30:26,493 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:30:26,493 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:30:26,493 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:30:26,493 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:30:26,493 environment.py:93 INFO Environment variable CC set to gcc (previous value: 'gcc') == 2024-03-25 18:30:26,493 environment.py:93 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') == 2024-03-25 18:30:26,493 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:30:26,493 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:30:26,493 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:30:26,494 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:30:26,494 environment.py:93 INFO Environment variable CXX set to g++ (previous value: 'g++') == 2024-03-25 18:30:26,494 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') == 2024-03-25 18:30:26,494 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:30:26,494 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:30:26,494 environment.py:93 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:30:26,494 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:30:26,494 environment.py:93 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:30:26,494 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:30:26,494 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:30:26,494 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:30:26,494 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:30:26,494 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:30:26,494 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:30:26,494 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:30:26,495 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:30:26,495 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno') == 2024-03-25 18:30:26,495 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:30:26,495 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:30:26,495 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:30:26,495 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:30:26,495 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:30:26,495 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:30:26,495 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:30:26,495 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:30:26,495 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:30:26,495 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:30:26,495 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:30:26,495 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:30:26,495 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:30:26,496 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include') == 2024-03-25 18:30:26,496 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:30:26,496 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib') == 2024-03-25 18:30:26,496 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:30:26,496 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previous value: 'libfftw3.so') == 2024-03-25 18:30:26,496 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:30:26,496 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previous value: 'libfftw3.so,libpthread.so') == 2024-03-25 18:30:26,496 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:30:26,496 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') == 2024-03-25 18:30:26,496 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:30:26,496 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') == 2024-03-25 18:30:26,496 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') == 2024-03-25 18:30:26,496 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') == 2024-03-25 18:30:26,496 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:30:26,496 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:30:26,497 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:30:26,497 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib') == 2024-03-25 18:30:26,497 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:30:26,497 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:30:26,497 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:30:26,497 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:30:26,497 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:30:26,497 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previous value: 'libflexiblas.so,libgfortran.so') == 2024-03-25 18:30:26,497 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:30:26,497 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previous value: 'libflexiblas.a,libgfortran.a') == 2024-03-25 18:30:26,497 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib (previous value: '-L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib') == 2024-03-25 18:30:26,497 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib (previous value: '-L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib') == 2024-03-25 18:30:26,497 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:30:26,497 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:30:26,497 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:30:26,498 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:30:26,498 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') == 2024-03-25 18:30:26,498 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') == 2024-03-25 18:30:26,498 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') == 2024-03-25 18:30:26,498 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') == 2024-03-25 18:30:26,498 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:30:26,498 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:30:26,498 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:30:26,498 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:30:26,498 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:30:26,498 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previous value: '-lflexiblas -lgfortran -lpthread') == 2024-03-25 18:30:26,498 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:30:26,498 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previous value: '-lflexiblas -lgfortran') == 2024-03-25 18:30:26,498 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') == 2024-03-25 18:30:26,498 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') == 2024-03-25 18:30:26,499 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') == 2024-03-25 18:30:26,499 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previous value: '-lscalapack -lflexiblas -lgfortran') == 2024-03-25 18:30:26,499 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previous value: '-lscalapack -lflexiblas -lgfortran -lpthread') == 2024-03-25 18:30:26,499 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previous value: '-lscalapack -lflexiblas -lgfortran -lpthread') == 2024-03-25 18:30:26,499 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:30:26,499 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:30:26,499 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:30:26,499 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') == 2024-03-25 18:30:26,499 environment.py:93 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') == 2024-03-25 18:30:26,499 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') == 2024-03-25 18:30:26,499 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') == 2024-03-25 18:30:26,499 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') == 2024-03-25 18:30:26,499 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:30:26,499 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:30:26,499 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:30:26,499 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') == 2024-03-25 18:30:26,500 environment.py:93 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') == 2024-03-25 18:30:26,500 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') == 2024-03-25 18:30:26,500 environment.py:93 INFO Environment variable MPI_INC_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include') == 2024-03-25 18:30:26,500 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include') == 2024-03-25 18:30:26,500 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64 (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64') == 2024-03-25 18:30:26,500 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64 (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64') == 2024-03-25 18:30:26,500 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so') == 2024-03-25 18:30:26,500 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so') == 2024-03-25 18:30:26,500 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') == 2024-03-25 18:30:26,500 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') == 2024-03-25 18:30:26,500 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') == 2024-03-25 18:30:26,500 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') == 2024-03-25 18:30:26,500 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') == 2024-03-25 18:30:26,500 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') == 2024-03-25 18:30:26,500 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:30:26,501 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:30:26,501 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:30:26,501 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') == 2024-03-25 18:30:26,501 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:30:26,501 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') == 2024-03-25 18:30:26,501 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') == 2024-03-25 18:30:26,501 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native') == 2024-03-25 18:30:26,501 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') == 2024-03-25 18:30:26,501 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno') == 2024-03-25 18:30:26,501 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previous value: '') == 2024-03-25 18:30:26,501 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previous value: '') == 2024-03-25 18:30:26,501 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib') == 2024-03-25 18:30:26,501 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib') == 2024-03-25 18:30:26,501 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:30:26,501 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so') == 2024-03-25 18:30:26,502 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:30:26,502 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a') == 2024-03-25 18:30:26,502 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') == 2024-03-25 18:30:26,502 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previous value: 'libscalapack.so,libflexiblas.so,libgfortran.so') == 2024-03-25 18:30:26,502 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') == 2024-03-25 18:30:26,502 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previous value: 'libscalapack.a,libflexiblas.a,libgfortran.a') == 2024-03-25 18:30:26,502 filetools.py:526 INFO Command python found at /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python == 2024-03-25 18:30:26,503 pythonpackage.py:511 INFO Python command being used: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python == 2024-03-25 18:30:26,503 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:30:26,563 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' == 2024-03-25 18:30:26,743 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:30:26,804 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=True, prefix="/tmp/"))' == 2024-03-25 18:30:26,984 filetools.py:1911 INFO Creating directory /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia (parents: True, set_gid: False, sticky: False) == 2024-03-25 18:30:26,984 run.py:247 INFO running cmd: tar xzf /data/gent/vo/001/gvo00117/easybuild/sources/c/Cassiopeia/extensions/Cassiopeia-2.0.0.tar.gz == 2024-03-25 18:30:27,068 build_log.py:267 INFO configuring... == 2024-03-25 18:30:27,069 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') == 2024-03-25 18:30:27,069 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:30:27,128 pythonpackage.py:735 INFO Checking of $LDSHARED auto-enabled for sufficiently recent Python version 3.11.3 == 2024-03-25 18:30:27,128 pythonpackage.py:747 INFO Python's value for $LDSHARED ('gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g') uses current $CC value ('gcc'), not touching it == 2024-03-25 18:30:27,128 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -V; /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print(sys.executable, sys.path)' == 2024-03-25 18:30:27,201 build_log.py:267 INFO building... == 2024-03-25 18:30:27,201 build_log.py:267 INFO testing... == 2024-03-25 18:30:27,201 build_log.py:267 INFO installing... == 2024-03-25 18:30:27,202 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:30:27,261 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sysconfig; print(sysconfig.get_default_scheme())' == 2024-03-25 18:30:27,320 pythonpackage.py:269 INFO Active Python installation scheme: posix_prefix == 2024-03-25 18:30:27,320 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python') == 2024-03-25 18:30:27,320 environment.py:93 INFO Environment variable PATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools') == 2024-03-25 18:30:27,321 pythonpackage.py:229 INFO Determining pip version... == 2024-03-25 18:30:27,321 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip --version == 2024-03-25 18:30:27,673 pythonpackage.py:237 INFO Found pip version: 23.1.2 == 2024-03-25 18:30:27,674 pythonpackage.py:605 INFO Found pip version 23.1.2, OK == 2024-03-25 18:30:27,674 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a --no-deps --ignore-installed --no-index --no-build-isolation . == 2024-03-25 18:30:52,108 run.py:687 INFO cmd " /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip install --prefix=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 0 and output: Processing /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0 Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: cassiopeia-lineage Building wheel for cassiopeia-lineage (pyproject.toml): started Building wheel for cassiopeia-lineage (pyproject.toml): finished with status 'done' Created wheel for cassiopeia-lineage: filename=cassiopeia_lineage-2.0.0-cp311-cp311-linux_x86_64.whl size=1626023 sha256=7197d62d5a89bb3d16cb2707f86bf083776ca16466e1e746661c3816480a3c22 Stored in directory: /tmp/vsc47063/eb-78i3uhl1/pip/wheels/c9/8a/87/f64531d386106450fb0633f9fbadd62ba8c8123a1f2749aa4a Successfully built cassiopeia-lineage Installing collected packages: cassiopeia-lineage Successfully installed cassiopeia-lineage-2.0.0 == 2024-03-25 18:30:52,108 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:30:52,173 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sysconfig; print(sysconfig.get_default_scheme())' == 2024-03-25 18:30:52,234 pythonpackage.py:269 INFO Active Python installation scheme: posix_prefix == 2024-03-25 18:30:52,234 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' == 2024-03-25 18:30:52,294 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sysconfig; print(sysconfig.get_default_scheme())' == 2024-03-25 18:30:52,355 pythonpackage.py:269 INFO Active Python installation scheme: posix_prefix == 2024-03-25 18:30:52,355 easyblock.py:2953 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env == 2024-03-25 18:30:52,355 environment.py:93 INFO Environment variable PYTHONPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python') == 2024-03-25 18:30:52,355 environment.py:93 INFO Environment variable PATH set to /apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools') == 2024-03-25 18:30:52,355 build_log.py:267 INFO ... (took 26 secs) == 2024-03-25 18:30:58,337 filetools.py:383 INFO Path /tmp/vsc47063/eb-78i3uhl1/tmpf9srndro successfully removed. == 2024-03-25 18:30:58,338 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_PATH set to 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/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:1;/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:1;/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:1;/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:1;/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:1;/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:1;/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:1;/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:1;/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:1;/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:1;/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:1;/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:1;/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python:1 (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:1;/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib/python3.11/site-packages:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:1;/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib/python3.11/site-packages:1;/apps/gent/RHEL8/cascadelake-ib/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:1;/apps/gent/RHEL8/cascadelake-ib/software/Pillow-SIMD/9.5.0-GCCcore-12.3.0/lib/python3.11/site-packages:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib/python3.11/site-packages:1;/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:1;/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib/python3.11/site-packages:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib/python3.11/site-packages:1;/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:1;/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:1;/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:1;/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:1;/apps/gent/RHEL8/cascadelake-ib/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:1;/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python:1') == 2024-03-25 18:30:58,338 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_MODULEPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all:2;/apps/gent/RHEL8/cascadelake-ampere-ib/modules/all:1;/apps/gent/RHEL8/cascadelake-ib/modules/all:1;/etc/modulefiles/vsc:1 (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all:2;/tmp/vsc47063/eb-78i3uhl1/tmpf9srndro/all:1;/apps/gent/RHEL8/cascadelake-ampere-ib/modules/all:1;/apps/gent/RHEL8/cascadelake-ib/modules/all:1;/etc/modulefiles/vsc:1') == 2024-03-25 18:30:58,339 environment.py:93 INFO Environment variable LOADEDMODULES set to env/vsc/donphan:env/slurm/donphan:env/software/donphan:cluster/donphan:GCCcore/12.3.0:zlib/1.2.13-GCCcore-12.3.0:binutils/2.40-GCCcore-12.3.0:GCC/12.3.0:numactl/2.0.16-GCCcore-12.3.0:XZ/5.4.2-GCCcore-12.3.0:libxml2/2.11.4-GCCcore-12.3.0:libpciaccess/0.17-GCCcore-12.3.0:hwloc/2.9.1-GCCcore-12.3.0:OpenSSL/1.1:libevent/2.1.12-GCCcore-12.3.0:UCX/1.14.1-GCCcore-12.3.0:libfabric/1.18.0-GCCcore-12.3.0:PMIx/4.2.4-GCCcore-12.3.0:UCC/1.2.0-GCCcore-12.3.0:OpenMPI/4.1.5-GCC-12.3.0:OpenBLAS/0.3.23-GCC-12.3.0:FlexiBLAS/3.3.1-GCC-12.3.0:FFTW/3.3.10-GCC-12.3.0:gompi/2023a:FFTW.MPI/3.3.10-gompi-2023a:ScaLAPACK/2.2.0-gompi-2023a-fb:foss/2023a:ncurses/6.4-GCCcore-12.3.0:bzip2/1.0.8-GCCcore-12.3.0:cURL/8.0.1-GCCcore-12.3.0:libarchive/3.6.2-GCCcore-12.3.0:CMake/3.26.3-GCCcore-12.3.0:libreadline/8.2-GCCcore-12.3.0:Tcl/8.6.13-GCCcore-12.3.0:SQLite/3.42.0-GCCcore-12.3.0:libffi/3.4.4-GCCcore-12.3.0:Python/3.11.3-GCCcore-12.3.0:cffi/1.15.1-GCCcore-12.3.0:cryptography/41.0.1-GCCcore-12.3.0:virtualenv/20.23.1-GCCcore-12.3.0:Python-bundle-PyPI/2023.06-GCCcore-12.3.0:gfbf/2023a:pybind11/2.11.1-GCCcore-12.3.0:SciPy-bundle/2023.07-gfbf-2023a:Biopython/1.83-foss-2023a:scikit-build/0.17.6-GCCcore-12.3.0:libpng/1.6.39-GCCcore-12.3.0:Brotli/1.0.9-GCCcore-12.3.0:freetype/2.13.0-GCCcore-12.3.0:expat/2.5.0-GCCcore-12.3.0:util-linux/2.39-GCCcore-12.3.0:fontconfig/2.14.2-GCCcore-12.3.0:xorg-macros/1.20.0-GCCcore-12.3.0:X11/20230603-GCCcore-12.3.0:Tk/8.6.13-GCCcore-12.3.0:Tkinter/3.11.3-GCCcore-12.3.0:NASM/2.16.01-GCCcore-12.3.0:libjpeg-turbo/2.1.5.1-GCCcore-12.3.0:jbigkit/2.1-GCCcore-12.3.0:gzip/1.12-GCCcore-12.3.0:lz4/1.9.4-GCCcore-12.3.0:zstd/1.5.5-GCCcore-12.3.0:libdeflate/1.18-GCCcore-12.3.0:LibTIFF/4.5.0-GCCcore-12.3.0:Pillow/10.0.0-GCCcore-12.3.0:Qhull/2020.2-GCCcore-12.3.0:Ninja/1.11.1-GCCcore-12.3.0:Meson/1.1.1-GCCcore-12.3.0:meson-python/0.13.2-GCCcore-12.3.0:libyaml/0.2.5-GCCcore-12.3.0:giflib/5.2.1-GCCcore-12.3.0:libwebp/1.3.1-GCCcore-12.3.0:Pillow-SIMD/9.5.0-GCCcore-12.3.0:tornado/6.3.2-GCCcore-12.3.0:bokeh/3.2.2-foss-2023a:matplotlib/3.7.2-gfbf-2023a:networkx/3.1-gfbf-2023a:numba/0.58.1-foss-2023a:Pysam/0.22.0-GCC-12.3.0:PyYAML/6.0-GCCcore-12.3.0:typing-extensions/4.9.0-GCCcore-12.3.0:tqdm/4.66.1-GCCcore-12.3.0:hatchling/1.18.0-GCCcore-12.3.0 (previous value: 'env/vsc/donphan:env/slurm/donphan:env/software/donphan:cluster/donphan:GCCcore/12.3.0:ncurses/6.4-GCCcore-12.3.0:zlib/1.2.13-GCCcore-12.3.0:bzip2/1.0.8-GCCcore-12.3.0:OpenSSL/1.1:cURL/8.0.1-GCCcore-12.3.0:XZ/5.4.2-GCCcore-12.3.0:libarchive/3.6.2-GCCcore-12.3.0:CMake/3.26.3-GCCcore-12.3.0:binutils/2.40-GCCcore-12.3.0:GCC/12.3.0:numactl/2.0.16-GCCcore-12.3.0:libxml2/2.11.4-GCCcore-12.3.0:libpciaccess/0.17-GCCcore-12.3.0:hwloc/2.9.1-GCCcore-12.3.0:libevent/2.1.12-GCCcore-12.3.0:UCX/1.14.1-GCCcore-12.3.0:libfabric/1.18.0-GCCcore-12.3.0:PMIx/4.2.4-GCCcore-12.3.0:UCC/1.2.0-GCCcore-12.3.0:OpenMPI/4.1.5-GCC-12.3.0:OpenBLAS/0.3.23-GCC-12.3.0:FlexiBLAS/3.3.1-GCC-12.3.0:FFTW/3.3.10-GCC-12.3.0:gompi/2023a:FFTW.MPI/3.3.10-gompi-2023a:ScaLAPACK/2.2.0-gompi-2023a-fb:foss/2023a:libreadline/8.2-GCCcore-12.3.0:Tcl/8.6.13-GCCcore-12.3.0:SQLite/3.42.0-GCCcore-12.3.0:libffi/3.4.4-GCCcore-12.3.0:Python/3.11.3-GCCcore-12.3.0:cffi/1.15.1-GCCcore-12.3.0:cryptography/41.0.1-GCCcore-12.3.0:virtualenv/20.23.1-GCCcore-12.3.0:Python-bundle-PyPI/2023.06-GCCcore-12.3.0:gfbf/2023a:pybind11/2.11.1-GCCcore-12.3.0:SciPy-bundle/2023.07-gfbf-2023a:Biopython/1.83-foss-2023a:scikit-build/0.17.6-GCCcore-12.3.0:libpng/1.6.39-GCCcore-12.3.0:Brotli/1.0.9-GCCcore-12.3.0:freetype/2.13.0-GCCcore-12.3.0:expat/2.5.0-GCCcore-12.3.0:util-linux/2.39-GCCcore-12.3.0:fontconfig/2.14.2-GCCcore-12.3.0:xorg-macros/1.20.0-GCCcore-12.3.0:X11/20230603-GCCcore-12.3.0:Tk/8.6.13-GCCcore-12.3.0:Tkinter/3.11.3-GCCcore-12.3.0:NASM/2.16.01-GCCcore-12.3.0:libjpeg-turbo/2.1.5.1-GCCcore-12.3.0:jbigkit/2.1-GCCcore-12.3.0:gzip/1.12-GCCcore-12.3.0:lz4/1.9.4-GCCcore-12.3.0:zstd/1.5.5-GCCcore-12.3.0:libdeflate/1.18-GCCcore-12.3.0:LibTIFF/4.5.0-GCCcore-12.3.0:Pillow/10.0.0-GCCcore-12.3.0:Qhull/2020.2-GCCcore-12.3.0:Ninja/1.11.1-GCCcore-12.3.0:Meson/1.1.1-GCCcore-12.3.0:meson-python/0.13.2-GCCcore-12.3.0:matplotlib/3.7.2-gfbf-2023a:libyaml/0.2.5-GCCcore-12.3.0:PyYAML/6.0-GCCcore-12.3.0:giflib/5.2.1-GCCcore-12.3.0:libwebp/1.3.1-GCCcore-12.3.0:Pillow-SIMD/9.5.0-GCCcore-12.3.0:tornado/6.3.2-GCCcore-12.3.0:bokeh/3.2.2-foss-2023a:networkx/3.1-gfbf-2023a:numba/0.58.1-foss-2023a:Pysam/0.22.0-GCC-12.3.0:typing-extensions/4.9.0-GCCcore-12.3.0:tqdm/4.66.1-GCCcore-12.3.0:hatchling/1.18.0-GCCcore-12.3.0') == 2024-03-25 18:30:58,339 environment.py:93 INFO Environment variable _ModuleTable003_ set to 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 (previous value: 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== 2024-03-25 18:30:58,339 environment.py:93 INFO Environment variable PATH set to 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== 2024-03-25 18:30:58,339 environment.py:93 INFO Environment variable _LMFILES_ set to 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(previous value: '/etc/modulefiles/vsc/env/vsc/donphan.lua:/etc/modulefiles/vsc/env/slurm/donphan.lua:/etc/modulefiles/vsc/env/software/donphan.lua:/etc/modulefiles/vsc/cluster/donphan.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/GCCcore/12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/ncurses/6.4-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/zlib/1.2.13-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/bzip2/1.0.8-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/OpenSSL/1.1.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/cURL/8.0.1-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/XZ/5.4.2-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/libarchive/3.6.2-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/CMake/3.26.3-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/binutils/2.40-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/GCC/12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/numactl/2.0.16-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/libxml2/2.11.4-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/libpciaccess/0.17-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/hwloc/2.9.1-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/libevent/2.1.12-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/UCX/1.14.1-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/libfabric/1.18.0-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/PMIx/4.2.4-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/UCC/1.2.0-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/OpenMPI/4.1.5-GCC-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/OpenBLAS/0.3.23-GCC-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/FlexiBLAS/3.3.1-GCC-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/FFTW/3.3.10-GCC-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/gompi/2023a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/FFTW.MPI/3.3.10-gompi-2023a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/ScaLAPACK/2.2.0-gompi-2023a-fb.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/foss/2023a.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/libreadline/8.2-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/Tcl/8.6.13-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/SQLite/3.42.0-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/libffi/3.4.4-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/Python/3.11.3-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/cffi/1.15.1-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/cryptography/41.0.1-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/virtualenv/20.23.1-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/Python-bundle-PyPI/2023.06-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/gfbf/2023a.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/pybind11/2.11.1-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/SciPy-bundle/2023.07-gfbf-2023a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/Biopython/1.83-foss-2023a.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/scikit-build/0.17.6-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/libpng/1.6.39-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/Brotli/1.0.9-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/freetype/2.13.0-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/expat/2.5.0-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/util-linux/2.39-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/fontconfig/2.14.2-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/xorg-macros/1.20.0-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/X11/20230603-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/Tk/8.6.13-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/Tkinter/3.11.3-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/NASM/2.16.01-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/libjpe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== 2024-03-25 18:30:58,339 environment.py:93 INFO Environment variable _ModuleTable005_ set to 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 (previous value: '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') == 2024-03-25 18:30:58,340 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_ACLOCAL_PATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/share/aclocal:1;/apps/gent/RHEL8/cascadelake-ib/software/xorg-macros/1.20.0-GCCcore-12.3.0/share/aclocal:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/share/aclocal:1;/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/share/aclocal:1;/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/share/aclocal:1;/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/share/aclocal:1 (previous value: '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/share/aclocal:1;/apps/gent/RHEL8/cascadelake-ib/software/xorg-macros/1.20.0-GCCcore-12.3.0/share/aclocal:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/share/aclocal:1;/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/share/aclocal:1;/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/share/aclocal:1;/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/share/aclocal:1') == 2024-03-25 18:30:58,340 environment.py:93 INFO Environment variable ACLOCAL_PATH set to 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== 2024-03-25 18:30:58,340 environment.py:93 INFO Environment variable CMAKE_PREFIX_PATH set to 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== 2024-03-25 18:30:58,340 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_CPATH set to 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== 2024-03-25 18:30:58,340 environment.py:93 INFO Environment variable CPATH set to 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(previous value: '/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/include:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/include:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libyaml/0.2.5-GCCcore-12.3.0/include:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/qhull/include:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/include:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/include:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/include:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/include:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/include:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/include:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/include:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/include:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/include:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/include:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/include:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/include:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/include/freetype2:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/include:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/include:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages/numpy/core/include:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/include:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/include:/apps/gent/RHEL8/cascadelake-ib/software/libffi/3.4.4-GCCcore-12.3.0/include:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/include:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/include:/apps/gent/RHEL8/cascadelake-ib/software/libreadline/8.2-GCCcore-12.3.0/include:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/FFTW.MPI/3.3.10-gompi-2023a/include:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include:/apps/gent/RHEL8/cascadelake-ib/software/OpenBLAS/0.3.23-GCC-12.3.0/include:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/include:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/include:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/include:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/include:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/include:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/include:/apps/gent/RHEL8/cascadelake-ib/software/libpciaccess/0.17-GCCcore-12.3.0/include:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/include/libxml2:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/include:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/include:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/include:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/include:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/include:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/include:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/include:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/include:/apps/gent/RHEL8/cascadelake-ib/software/zlib/1.2.13-GCCcore-12.3.0/include:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/include') == 2024-03-25 18:30:58,341 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_LD_LIBRARY_PATH set to /apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/lib:1;/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libyaml/0.2.5-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/lib:1;/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/lib:1 (previous value: 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== 2024-03-25 18:30:58,341 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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== 2024-03-25 18:30:58,341 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_LIBRARY_PATH set to 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(previous value: '/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib:1;/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib:1;/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/lib:1;/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libyaml/0.2.5-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/meson-python/0.13.2-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tkinter/3.11.3-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/lib:1;/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/lib:1;/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib:1;/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages/numpy/core/lib:1;/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/lib:1;/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib:1;/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/lib:1;/apps/gent/RHEL8/cascadelake-ib/software/cffi/1.15.1-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib:1;/apps/gent/RHEL8/cascadelake-ib/software/libffi/3.4.4-GCCcore-12.3.0/lib64:1;/apps/gent/RHEL8/cascadelake-ib/software/libffi/3.4.4-GCCcore-12.3.0/lib:1;/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/lib:1;/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/lib:1;/apps/gent/RHEL8/cascadelake-ib/software/libreadline/8.2-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/FFTW.MPI/3.3.10-gompi-2023a/lib:1;/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib:1;/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib:1;/apps/gent/RHEL8/cascadelake-ib/software/OpenBLAS/0.3.23-GCC-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/lib:1;/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/lib:1;/apps/gent/RHEL8/cascadelake-ib/software/libpciaccess/0.17-GCCcore-12.3.0/lib:1;/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/lib:1;/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/lib:1;/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12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== 2024-03-25 18:30:58,341 environment.py:93 INFO Environment variable LIBRARY_PATH set to 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== 2024-03-25 18:30:58,341 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_MANPATH set to 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== 2024-03-25 18:30:58,341 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_PKG_CONFIG_PATH set to 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== 2024-03-25 18:30:58,341 environment.py:93 INFO Environment variable PKG_CONFIG_PATH set to /apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libyaml/0.2.5-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/share/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/xorg-macros/1.20.0-GCCcore-12.3.0/share/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/share/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/libffi/3.4.4-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/libreadline/8.2-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/OpenBLAS/0.3.23-GCC-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/libpciaccess/0.17-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/zlib/1.2.13-GCCcore-12.3.0/lib/pkgconfig (previous value: 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== 2024-03-25 18:30:58,341 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_XDG_DATA_DIRS set to 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'bCIKLCAiL3RtcC92c2M0NzA2My9lYi03OGkzdWhsMS90bXBmOXNybmRyby9hbGwiLCAiL2FwcHMvZ2VudC9SSEVMOC9jYXNjYWRlbGFrZS1hbXBlcmUtaWIvbW9kdWxlcy9hbGwiCiwgIi9hcHBzL2dlbnQvUkhFTDgvY2FzY2FkZWxha2UtaWIvbW9kdWxlcy9hbGwiLCAiL2V0Yy9tb2R1bGVmaWxlcy92c2MiLAp9LApzeXN0ZW1CYXNlTVBBVEggPSAiL2V0Yy9tb2R1bGVmaWxlcy92c2MiLAp9Cg==') == 2024-03-25 18:30:58,349 environment.py:93 INFO Environment variable CPPFLAGS set to -I/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:30:58,349 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previous value: '-I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas') == 2024-03-25 18:30:58,349 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib -L/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib -L/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib -L/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib (previous value: '-L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib') == 2024-03-25 18:30:58,349 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib -L/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib -L/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib -L/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib (previous value: '-L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib') == 2024-03-25 18:30:58,353 build_log.py:267 INFO ... (took 2 mins 56 secs) == 2024-03-25 18:30:58,353 build_log.py:267 INFO restore after iterating... == 2024-03-25 18:30:58,353 easyblock.py:3956 INFO Starting postiter step == 2024-03-25 18:30:58,353 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:30:58,353 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' == 2024-03-25 18:30:58,353 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) == 2024-03-25 18:30:58,354 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='cassiopeia', builddir='/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a', github_account='cassiopeia', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a', module_name='Cassiopeia/2.0.0-foss-2023a', mpi_cmd_prefix='mpirun -n 1', name='Cassiopeia', nameletter='C', nameletterlower='c', namelower='cassiopeia', parallel='8', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.3', start_dir='/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='2.0.0', version_major='2', version_major_minor='2.0', version_minor='0', versionprefix='', versionsuffix='' == 2024-03-25 18:30:58,354 easyblock.py:3964 INFO Running method post_iter_step part of step postiter == 2024-03-25 18:30:58,354 build_log.py:267 INFO ... (took < 1 sec) == 2024-03-25 18:30:58,354 build_log.py:267 INFO postprocessing... == 2024-03-25 18:30:58,354 easyblock.py:3956 INFO Starting postproc step == 2024-03-25 18:30:58,354 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:30:58,354 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' == 2024-03-25 18:30:58,354 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) == 2024-03-25 18:30:58,354 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='cassiopeia', builddir='/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a', github_account='cassiopeia', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a', module_name='Cassiopeia/2.0.0-foss-2023a', mpi_cmd_prefix='mpirun -n 1', name='Cassiopeia', nameletter='C', nameletterlower='c', namelower='cassiopeia', parallel='8', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.3', start_dir='/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='2.0.0', version_major='2', version_major_minor='2.0', version_minor='0', versionprefix='', versionsuffix='' == 2024-03-25 18:30:58,354 easyblock.py:3964 INFO Running method post_install_step part of step postproc == 2024-03-25 18:30:58,355 easyblock.py:2953 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env == 2024-03-25 18:30:58,357 filetools.py:338 INFO Symlinked lib to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib64 == 2024-03-25 18:30:58,357 build_log.py:267 INFO ... (took < 1 sec) == 2024-03-25 18:30:58,357 build_log.py:267 INFO sanity checking... == 2024-03-25 18:30:58,357 easyblock.py:3956 INFO Starting sanitycheck step == 2024-03-25 18:30:58,357 easyconfig.py:1702 INFO Generating template values... == 2024-03-25 18:30:58,358 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' == 2024-03-25 18:30:58,358 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) == 2024-03-25 18:30:58,358 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='cassiopeia', builddir='/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a', github_account='cassiopeia', installdir='/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a', module_name='Cassiopeia/2.0.0-foss-2023a', mpi_cmd_prefix='mpirun -n 1', name='Cassiopeia', nameletter='C', nameletterlower='c', namelower='cassiopeia', parallel='8', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.3', start_dir='/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='2.0.0', version_major='2', version_major_minor='2.0', version_minor='0', versionprefix='', versionsuffix='' == 2024-03-25 18:30:58,358 easyblock.py:3964 INFO Running method sanity_check_step part of step sanitycheck == 2024-03-25 18:30:58,358 easyblock.py:3356 INFO Using (only) sanity check paths specified by easyconfig file: {'files': [], 'dirs': ['lib/python3.11/site-packages']} == 2024-03-25 18:30:58,358 easyblock.py:3409 INFO Using (only) sanity check commands specified by easyconfig file: ['cd /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-* && make test'] == 2024-03-25 18:30:58,359 easyblock.py:1702 INFO Loading fake module (Cassiopeia/2.0.0-foss-2023a) == 2024-03-25 18:30:58,814 easyblock.py:1605 INFO Fixed symlink lib64 in paths for CMAKE_LIBRARY_PATH: ['lib64'] -> [] == 2024-03-25 18:30:58,815 easyblock.py:1605 INFO Fixed symlink lib64 in paths for LD_LIBRARY_PATH: ['lib', 'lib64'] -> ['lib', 'lib'] == 2024-03-25 18:30:58,815 easyblock.py:1619 INFO Only retaining paths for LD_LIBRARY_PATH that contain at least one file: ['lib'] -> [] == 2024-03-25 18:30:58,815 easyblock.py:1605 INFO Fixed symlink lib64 in paths for LIBRARY_PATH: ['lib', 'lib64'] -> ['lib', 'lib'] == 2024-03-25 18:30:58,816 filetools.py:1911 INFO Creating directory /tmp/vsc47063/eb-78i3uhl1/tmpf9srndro/all/Cassiopeia (parents: True, set_gid: False, sticky: False) == 2024-03-25 18:30:58,817 easyblock.py:3772 INFO Module file /tmp/vsc47063/eb-78i3uhl1/tmpf9srndro/all/Cassiopeia/2.0.0-foss-2023a.lua written: help([==[ Description =========== A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction. More information ================ - Homepage: https://github.com/YosefLab/Cassiopeia Included extensions =================== Cassiopeia-2.0.0, hatch_nodejs_version-0.3.2, hits-0.4.0, itolapi-4.1.4, Levenshtein-0.22.0, nbconvert-7.16.3, nbformat-5.10.3, ngs-tools-1.8.5, python-Levenshtein-0.22.0 ]==]) whatis([==[Description: A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction.]==]) whatis([==[Homepage: https://github.com/YosefLab/Cassiopeia]==]) whatis([==[URL: https://github.com/YosefLab/Cassiopeia]==]) whatis([==[Extensions: Cassiopeia-2.0.0, hatch_nodejs_version-0.3.2, hits-0.4.0, itolapi-4.1.4, Levenshtein-0.22.0, nbconvert-7.16.3, nbformat-5.10.3, ngs-tools-1.8.5, python-Levenshtein-0.22.0]==]) local root = "/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a" conflict("Cassiopeia") if not ( isloaded("foss/2023a") ) then load("foss/2023a") end if not ( isloaded("Python/3.11.3-GCCcore-12.3.0") ) then load("Python/3.11.3-GCCcore-12.3.0") end if not ( isloaded("Python-bundle-PyPI/2023.06-GCCcore-12.3.0") ) then load("Python-bundle-PyPI/2023.06-GCCcore-12.3.0") end if not ( isloaded("Biopython/1.83-foss-2023a") ) then load("Biopython/1.83-foss-2023a") end if not ( isloaded("scikit-build/0.17.6-GCCcore-12.3.0") ) then load("scikit-build/0.17.6-GCCcore-12.3.0") end if not ( isloaded("bokeh/3.2.2-foss-2023a") ) then load("bokeh/3.2.2-foss-2023a") end if not ( isloaded("matplotlib/3.7.2-gfbf-2023a") ) then load("matplotlib/3.7.2-gfbf-2023a") end if not ( isloaded("networkx/3.1-gfbf-2023a") ) then load("networkx/3.1-gfbf-2023a") end if not ( isloaded("numba/0.58.1-foss-2023a") ) then load("numba/0.58.1-foss-2023a") end if not ( isloaded("Pysam/0.22.0-GCC-12.3.0") ) then load("Pysam/0.22.0-GCC-12.3.0") end if not ( isloaded("PyYAML/6.0-GCCcore-12.3.0") ) then load("PyYAML/6.0-GCCcore-12.3.0") end if not ( isloaded("typing-extensions/4.9.0-GCCcore-12.3.0") ) then load("typing-extensions/4.9.0-GCCcore-12.3.0") end if not ( isloaded("tqdm/4.66.1-GCCcore-12.3.0") ) then load("tqdm/4.66.1-GCCcore-12.3.0") end if not ( isloaded("hatchling/1.18.0-GCCcore-12.3.0") ) then load("hatchling/1.18.0-GCCcore-12.3.0") end prepend_path("CMAKE_PREFIX_PATH", root) prepend_path("LIBRARY_PATH", pathJoin(root, "lib")) prepend_path("PATH", pathJoin(root, "bin")) prepend_path("XDG_DATA_DIRS", pathJoin(root, "share")) setenv("EBROOTCASSIOPEIA", root) setenv("EBVERSIONCASSIOPEIA", "2.0.0") setenv("EBDEVELCASSIOPEIA", pathJoin(root, "easybuild/Cassiopeia-2.0.0-foss-2023a-easybuild-devel")) prepend_path("PYTHONPATH", pathJoin(root, "lib/python3.11/site-packages")) -- Built with EasyBuild version 4.9.1.dev0-r92d29680fb5d14086943c96a9efcd2558093f6ae setenv("EBEXTSLISTCASSIOPEIA", "hatch_nodejs_version-0.3.2,ngs-tools-1.8.5,nbformat-5.10.3,nbconvert-7.16.3,itolapi-4.1.4,hits-0.4.0,Levenshtein-0.22.0,python-Levenshtein-0.22.0,Cassiopeia-2.0.0") == 2024-03-25 18:30:58,817 filetools.py:1911 INFO Creating directory /tmp/vsc47063/eb-78i3uhl1/tmpf9srndro/bio/Cassiopeia (parents: True, set_gid: False, sticky: False) == 2024-03-25 18:30:58,817 easyblock.py:3803 INFO Skipping devel module... == 2024-03-25 18:30:58,818 filetools.py:338 INFO Symlinked 2.0.0-foss-2023a.lua to /tmp/vsc47063/eb-78i3uhl1/tmpf9srndro/all/Cassiopeia/default == 2024-03-25 18:30:58,818 module_generator.py:1502 INFO Module default version file written to point to /tmp/vsc47063/eb-78i3uhl1/tmpf9srndro/all/Cassiopeia/default == 2024-03-25 18:31:04,419 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_PATH set to /usr/libexec/jobcli:1;/user/gent/470/vsc47063/easybuild/easybuild-framework:1;/opt/VirtualGL/bin:1;/usr/local/bin:1;/usr/bin:1;/usr/local/sbin:1;/usr/sbin:1;/user/gent/470/vsc47063/.dotnet/tools:1 (previous value: 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== 2024-03-25 18:31:04,420 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_MODULEPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all:2;/apps/gent/RHEL8/cascadelake-ampere-ib/modules/all:1;/apps/gent/RHEL8/cascadelake-ib/modules/all:1;/etc/modulefiles/vsc:1 (previous value: '/tmp/vsc47063/eb-78i3uhl1/tmpf9srndro/all:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all:2;/apps/gent/RHEL8/cascadelake-ampere-ib/modules/all:1;/apps/gent/RHEL8/cascadelake-ib/modules/all:1;/etc/modulefiles/vsc:1') == 2024-03-25 18:31:04,420 environment.py:93 INFO Environment variable _ModuleTable001_ set to 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== 2024-03-25 18:31:04,420 environment.py:93 INFO Environment variable _ModuleTable003_ set to 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 (previous value: 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== 2024-03-25 18:31:04,420 environment.py:93 INFO Environment variable MODULEPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all:/apps/gent/RHEL8/cascadelake-ampere-ib/modules/all:/apps/gent/RHEL8/cascadelake-ib/modules/all:/etc/modulefiles/vsc (previous value: '/tmp/vsc47063/eb-78i3uhl1/tmpf9srndro/all:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all:/apps/gent/RHEL8/cascadelake-ampere-ib/modules/all:/apps/gent/RHEL8/cascadelake-ib/modules/all:/etc/modulefiles/vsc') == 2024-03-25 18:31:04,420 environment.py:93 INFO Environment variable PATH set to /usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Meson/1.1.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/gzip/1.12-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/NASM/2.16.01-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/sbin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCC/1.2.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/bin:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/bin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/bin:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/bin:/usr/libexec/jobcli:/user/gent/470/vsc47063/easybuild/easybuild-framework:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/470/vsc47063/.dotnet/tools') == 2024-03-25 18:31:04,420 environment.py:93 INFO Environment variable _LMFILES_ set to /etc/modulefiles/vsc/env/vsc/donphan.lua:/etc/modulefiles/vsc/env/slurm/donphan.lua:/etc/modulefiles/vsc/env/software/donphan.lua:/etc/modulefiles/vsc/cluster/donphan.lua (previous value: '/etc/modulefiles/vsc/env/vsc/donphan.lua:/etc/modulefiles/vsc/env/slurm/donphan.lua:/etc/modulefiles/vsc/env/software/donphan.lua:/etc/modulefiles/vsc/cluster/donphan.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/GCCcore/12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/zlib/1.2.13-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/binutils/2.40-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/GCC/12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/numactl/2.0.16-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/XZ/5.4.2-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/libxml2/2.11.4-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/libpciaccess/0.17-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/hwloc/2.9.1-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/OpenSSL/1.1.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/libevent/2.1.12-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/UCX/1.14.1-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/libfabric/1.18.0-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/PMIx/4.2.4-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/UCC/1.2.0-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/OpenMPI/4.1.5-GCC-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/OpenBLAS/0.3.23-GCC-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/FlexiBLAS/3.3.1-GCC-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/FFTW/3.3.10-GCC-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/gompi/2023a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/FFTW.MPI/3.3.10-gompi-2023a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/ScaLAPACK/2.2.0-gompi-2023a-fb.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/foss/2023a.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/ncurses/6.4-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/bzip2/1.0.8-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/cURL/8.0.1-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/libarchive/3.6.2-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/CMake/3.26.3-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/libreadline/8.2-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/Tcl/8.6.13-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/SQLite/3.42.0-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/libffi/3.4.4-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/Python/3.11.3-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/cffi/1.15.1-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/cryptography/41.0.1-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/virtualenv/20.23.1-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/Python-bundle-PyPI/2023.06-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/gfbf/2023a.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/pybind11/2.11.1-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/SciPy-bundle/2023.07-gfbf-2023a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/Biopython/1.83-foss-2023a.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/scikit-build/0.17.6-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/libpng/1.6.39-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/Brotli/1.0.9-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/freetype/2.13.0-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/expat/2.5.0-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/util-linux/2.39-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/fontconfig/2.14.2-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/xorg-macros/1.20.0-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/X11/20230603-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/Tk/8.6.13-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/Tkinter/3.11.3-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/NASM/2.16.01-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/jbigkit/2.1-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/gzip/1.12-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/lz4/1.9.4-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/zstd/1.5.5-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/libdeflate/1.18-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/LibTIFF/4.5.0-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/Pillow/10.0.0-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/Qhull/2020.2-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/Ninja/1.11.1-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/Meson/1.1.1-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/meson-python/0.13.2-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/libyaml/0.2.5-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/giflib/5.2.1-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/libwebp/1.3.1-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/Pillow-SIMD/9.5.0-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/tornado/6.3.2-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/bokeh/3.2.2-foss-2023a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/matplotlib/3.7.2-gfbf-2023a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/networkx/3.1-gfbf-2023a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/numba/0.58.1-foss-2023a.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/Pysam/0.22.0-GCC-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/PyYAML/6.0-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/typing-extensions/4.9.0-GCCcore-12.3.0.lua:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all/tqdm/4.66.1-GCCcore-12.3.0.lua:/apps/gent/RHEL8/cascadelake-ib/modules/all/hatchling/1.18.0-GCCcore-12.3.0.lua') == 2024-03-25 18:31:04,421 environment.py:93 INFO Environment variable _ModuleTable005_ set to 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 (previous value: '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') == 2024-03-25 18:31:04,426 modules.py:472 INFO $MODULEPATH set via list of module paths (w/ 'module use'): /tmp/vsc47063/eb-78i3uhl1/tmpf9srndro/all:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all:/apps/gent/RHEL8/cascadelake-ampere-ib/modules/all:/apps/gent/RHEL8/cascadelake-ib/modules/all:/etc/modulefiles/vsc == 2024-03-25 18:31:10,363 environment.py:93 INFO Environment variable OMPI_MCA_rmaps_base_oversubscribe set to 1 (previously undefined) == 2024-03-25 18:31:10,363 run.py:247 INFO running cmd: cd /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-* && make test == 2024-03-25 18:31:54,848 run.py:701 WARNING Found 71 potential errors (some may be harmless) in output of cd /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-* && make test: _________________________ ERROR collecting test/critique_tests/test_tree_compare.py _________________________ _________________________ ERROR collecting test/data_tests/cassiopeia_tree_test.py __________________________ __________________________ ERROR collecting test/data_tests/data_utilities_test.py __________________________ ______________________________ ERROR collecting test/data_tests/layers_test.py ______________________________ ________________________ ERROR collecting test/plotting_tests/itol_plotting_test.py _________________________ _______________________ ERROR collecting test/preprocess_tests/align_sequence_test.py _______________________ ________________________ ERROR collecting test/preprocess_tests/call_alleles_test.py ________________________ ____________________ ERROR collecting test/preprocess_tests/call_lineage_groups_test.py _____________________ ______________________ ERROR collecting test/preprocess_tests/character_matrix_test.py ______________________ ________________________ ERROR collecting test/preprocess_tests/collapse_umi_test.py ________________________ _______________________ ERROR collecting test/preprocess_tests/config_parser_test.py ________________________ _______________ ERROR collecting test/preprocess_tests/convert_fastqs_to_unmapped_bam_test.py _______________ _____________ ERROR collecting test/preprocess_tests/error_correct_cellbcs_to_whitelist_test.py _____________ _____________ ERROR collecting test/preprocess_tests/error_correct_intbcs_to_whitelist_test.py ______________ _____________________ ERROR collecting test/preprocess_tests/error_correct_umi_test.py ______________________ _________________________ ERROR collecting test/preprocess_tests/filter_bam_test.py _________________________ ___________________ ERROR collecting test/preprocess_tests/filter_molecule_table_test.py ____________________ ____________________ ERROR collecting test/preprocess_tests/resolve_umi_sequence_test.py ____________________ ____________________ ERROR collecting test/simulator_tests/birth_death_simulator_test.py ____________________ _______________ ERROR collecting test/simulator_tests/cas9_lineage_tracing_simulator_test.py ________________ __________________ ERROR collecting test/simulator_tests/complete_binary_simulator_test.py __________________ ________________ ERROR collecting test/simulator_tests/simple_fit_subclone_simulator_test.py ________________ ____________________ ERROR collecting test/simulator_tests/supercellular_sampler_test.py ____________________ ___________________ ERROR collecting test/simulator_tests/unifom_leaf_subsampler_test.py ____________________ ____________________ ERROR collecting test/solver_tests/dissimilarity_functions_test.py _____________________ ________________________ ERROR collecting test/solver_tests/greedy_variants_test.py _________________________ _________________________ ERROR collecting test/solver_tests/hybrid_solver_test.py __________________________ ___________________________ ERROR collecting test/solver_tests/ilp_solver_test.py ___________________________ _____________________________ ERROR collecting test/solver_tests/maxcut_test.py _____________________________ _____________________ ERROR collecting test/solver_tests/neighborjoining_solver_test.py _____________________ __________________________ ERROR collecting test/solver_tests/percolation_test.py ___________________________ ______________________ ERROR collecting test/solver_tests/sharedmutationjoiner_test.py ______________________ ____________________________ ERROR collecting test/solver_tests/spectral_test.py ____________________________ _____________________________ ERROR collecting test/solver_tests/upgma_test.py ______________________________ _________________________ ERROR collecting test/solver_tests/vanillagreedy_test.py __________________________ ERROR test/critique_tests/test_tree_compare.py ERROR test/data_tests/cassiopeia_tree_test.py ERROR test/data_tests/data_utilities_test.py ERROR test/data_tests/layers_test.py ERROR test/plotting_tests/itol_plotting_test.py ERROR test/preprocess_tests/align_sequence_test.py ERROR test/preprocess_tests/call_alleles_test.py ERROR test/preprocess_tests/call_lineage_groups_test.py ERROR test/preprocess_tests/character_matrix_test.py ERROR test/preprocess_tests/collapse_umi_test.py ERROR test/preprocess_tests/config_parser_test.py ERROR test/preprocess_tests/convert_fastqs_to_unmapped_bam_test.py ERROR test/preprocess_tests/error_correct_cellbcs_to_whitelist_test.py ERROR test/preprocess_tests/error_correct_intbcs_to_whitelist_test.py ERROR test/preprocess_tests/error_correct_umi_test.py ERROR test/preprocess_tests/filter_bam_test.py ERROR test/preprocess_tests/filter_molecule_table_test.py ERROR test/preprocess_tests/resolve_umi_sequence_test.py ERROR test/simulator_tests/birth_death_simulator_test.py ERROR test/simulator_tests/cas9_lineage_tracing_simulator_test.py ERROR test/simulator_tests/complete_binary_simulator_test.py ERROR test/simulator_tests/simple_fit_subclone_simulator_test.py ERROR test/simulator_tests/supercellular_sampler_test.py ERROR test/simulator_tests/unifom_leaf_subsampler_test.py ERROR test/solver_tests/dissimilarity_functions_test.py ERROR test/solver_tests/greedy_variants_test.py ERROR test/solver_tests/hybrid_solver_test.py ERROR test/solver_tests/ilp_solver_test.py ERROR test/solver_tests/maxcut_test.py ERROR test/solver_tests/neighborjoining_solver_test.py ERROR test/solver_tests/percolation_test.py ERROR test/solver_tests/sharedmutationjoiner_test.py ERROR test/solver_tests/spectral_test.py ERROR test/solver_tests/upgma_test.py ERROR test/solver_tests/vanillagreedy_test.py make: *** [Makefile:30: test] Error 2 == 2024-03-25 18:31:54,849 easyblock.py:3638 WARNING Sanity check: sanity check command cd /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-* && make test exited with code 2 (output: python -m pytest -vv ./test ============================================ test session starts ============================================ platform linux -- Python 3.11.3, pytest-7.4.0, pluggy-1.2.0 -- /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python cachedir: .pytest_cache rootdir: /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0 plugins: xdist-3.3.1 collecting ... collected 1 item / 35 errors ================================================== ERRORS =================================================== _________________________ ERROR collecting test/critique_tests/test_tree_compare.py _________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/critique_tests/test_tree_compare.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/critique_tests/test_tree_compare.py:11: in import cassiopeia as cas cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' _________________________ ERROR collecting test/data_tests/cassiopeia_tree_test.py __________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/data_tests/cassiopeia_tree_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/data_tests/cassiopeia_tree_test.py:14: in import cassiopeia as cas cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' __________________________ ERROR collecting test/data_tests/data_utilities_test.py __________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/data_tests/data_utilities_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/data_tests/data_utilities_test.py:12: in from cassiopeia.data import utilities as data_utilities cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ______________________________ ERROR collecting test/data_tests/layers_test.py ______________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/data_tests/layers_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/data_tests/layers_test.py:13: in import cassiopeia as cas cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ________________________ ERROR collecting test/plotting_tests/itol_plotting_test.py _________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/plotting_tests/itol_plotting_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/plotting_tests/itol_plotting_test.py:17: in import cassiopeia as cas cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' _______________________ ERROR collecting test/preprocess_tests/align_sequence_test.py _______________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/preprocess_tests/align_sequence_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/preprocess_tests/align_sequence_test.py:9: in import cassiopeia cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ________________________ ERROR collecting test/preprocess_tests/call_alleles_test.py ________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/preprocess_tests/call_alleles_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/preprocess_tests/call_alleles_test.py:9: in import cassiopeia cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ____________________ ERROR collecting test/preprocess_tests/call_lineage_groups_test.py _____________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/preprocess_tests/call_lineage_groups_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/preprocess_tests/call_lineage_groups_test.py:8: in import cassiopeia cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ______________________ ERROR collecting test/preprocess_tests/character_matrix_test.py ______________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/preprocess_tests/character_matrix_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/preprocess_tests/character_matrix_test.py:9: in import cassiopeia as cas cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ________________________ ERROR collecting test/preprocess_tests/collapse_umi_test.py ________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/preprocess_tests/collapse_umi_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/preprocess_tests/collapse_umi_test.py:11: in from cassiopeia.preprocess import UMI_utils cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' _______________________ ERROR collecting test/preprocess_tests/config_parser_test.py ________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/preprocess_tests/config_parser_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/preprocess_tests/config_parser_test.py:11: in from cassiopeia.preprocess import cassiopeia_preprocess cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' _______________ ERROR collecting test/preprocess_tests/convert_fastqs_to_unmapped_bam_test.py _______________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/preprocess_tests/convert_fastqs_to_unmapped_bam_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/preprocess_tests/convert_fastqs_to_unmapped_bam_test.py:11: in from cassiopeia.preprocess import pipeline cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' _____________ ERROR collecting test/preprocess_tests/error_correct_cellbcs_to_whitelist_test.py _____________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/preprocess_tests/error_correct_cellbcs_to_whitelist_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/preprocess_tests/error_correct_cellbcs_to_whitelist_test.py:11: in from cassiopeia.preprocess import pipeline cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' _____________ ERROR collecting test/preprocess_tests/error_correct_intbcs_to_whitelist_test.py ______________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/preprocess_tests/error_correct_intbcs_to_whitelist_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/preprocess_tests/error_correct_intbcs_to_whitelist_test.py:7: in import cassiopeia cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' _____________________ ERROR collecting test/preprocess_tests/error_correct_umi_test.py ______________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/preprocess_tests/error_correct_umi_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/preprocess_tests/error_correct_umi_test.py:9: in import cassiopeia cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' _________________________ ERROR collecting test/preprocess_tests/filter_bam_test.py _________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/preprocess_tests/filter_bam_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/preprocess_tests/filter_bam_test.py:11: in from cassiopeia.preprocess import pipeline cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ___________________ ERROR collecting test/preprocess_tests/filter_molecule_table_test.py ____________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/preprocess_tests/filter_molecule_table_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/preprocess_tests/filter_molecule_table_test.py:6: in import cassiopeia cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ____________________ ERROR collecting test/preprocess_tests/resolve_umi_sequence_test.py ____________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/preprocess_tests/resolve_umi_sequence_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/preprocess_tests/resolve_umi_sequence_test.py:7: in from cassiopeia.preprocess import pipeline cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ____________________ ERROR collecting test/simulator_tests/birth_death_simulator_test.py ____________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/simulator_tests/birth_death_simulator_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/simulator_tests/birth_death_simulator_test.py:9: in from cassiopeia.data.CassiopeiaTree import CassiopeiaTree cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' _______________ ERROR collecting test/simulator_tests/cas9_lineage_tracing_simulator_test.py ________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/simulator_tests/cas9_lineage_tracing_simulator_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/simulator_tests/cas9_lineage_tracing_simulator_test.py:11: in import cassiopeia as cas cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' __________________ ERROR collecting test/simulator_tests/complete_binary_simulator_test.py __________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/simulator_tests/complete_binary_simulator_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/simulator_tests/complete_binary_simulator_test.py:4: in from cassiopeia.simulator import CompleteBinarySimulator, TreeSimulatorError cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ________________ ERROR collecting test/simulator_tests/simple_fit_subclone_simulator_test.py ________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/simulator_tests/simple_fit_subclone_simulator_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/simulator_tests/simple_fit_subclone_simulator_test.py:4: in from cassiopeia.simulator import SimpleFitSubcloneSimulator cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ____________________ ERROR collecting test/simulator_tests/supercellular_sampler_test.py ____________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/simulator_tests/supercellular_sampler_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/simulator_tests/supercellular_sampler_test.py:7: in from cassiopeia.data.CassiopeiaTree import CassiopeiaTree, CassiopeiaTreeError cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ___________________ ERROR collecting test/simulator_tests/unifom_leaf_subsampler_test.py ____________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/simulator_tests/unifom_leaf_subsampler_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/simulator_tests/unifom_leaf_subsampler_test.py:6: in from cassiopeia.data.CassiopeiaTree import CassiopeiaTree cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ____________________ ERROR collecting test/solver_tests/dissimilarity_functions_test.py _____________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/solver_tests/dissimilarity_functions_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/solver_tests/dissimilarity_functions_test.py:10: in from cassiopeia.solver import dissimilarity_functions cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ________________________ ERROR collecting test/solver_tests/greedy_variants_test.py _________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/solver_tests/greedy_variants_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/solver_tests/greedy_variants_test.py:7: in import cassiopeia as cas cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' _________________________ ERROR collecting test/solver_tests/hybrid_solver_test.py __________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/solver_tests/hybrid_solver_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/solver_tests/hybrid_solver_test.py:12: in import cassiopeia as cas cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ___________________________ ERROR collecting test/solver_tests/ilp_solver_test.py ___________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/solver_tests/ilp_solver_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/solver_tests/ilp_solver_test.py:13: in import cassiopeia as cas cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' _____________________________ ERROR collecting test/solver_tests/maxcut_test.py _____________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/solver_tests/maxcut_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/solver_tests/maxcut_test.py:7: in import cassiopeia as cas cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' _____________________ ERROR collecting test/solver_tests/neighborjoining_solver_test.py _____________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/solver_tests/neighborjoining_solver_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/solver_tests/neighborjoining_solver_test.py:13: in import cassiopeia as cas cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' __________________________ ERROR collecting test/solver_tests/percolation_test.py ___________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/solver_tests/percolation_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/solver_tests/percolation_test.py:14: in import cassiopeia as cas cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ______________________ ERROR collecting test/solver_tests/sharedmutationjoiner_test.py ______________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/solver_tests/sharedmutationjoiner_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/solver_tests/sharedmutationjoiner_test.py:15: in from cassiopeia.data.CassiopeiaTree import CassiopeiaTree cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ____________________________ ERROR collecting test/solver_tests/spectral_test.py ____________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/solver_tests/spectral_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/solver_tests/spectral_test.py:7: in import cassiopeia as cas cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' _____________________________ ERROR collecting test/solver_tests/upgma_test.py ______________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/solver_tests/upgma_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/solver_tests/upgma_test.py:12: in from cassiopeia.data.CassiopeiaTree import CassiopeiaTree cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' _________________________ ERROR collecting test/solver_tests/vanillagreedy_test.py __________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/solver_tests/vanillagreedy_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/solver_tests/vanillagreedy_test.py:7: in import cassiopeia as cas cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ============================================= warnings summary ============================================== ../../../../../../../../../scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages/ete3/webplugin/webapp.py:44 /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages/ete3/webplugin/webapp.py:44: DeprecationWarning: 'cgi' is deprecated and slated for removal in Python 3.13 import cgi -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ========================================== short test summary info ========================================== ERROR test/critique_tests/test_tree_compare.py ERROR test/data_tests/cassiopeia_tree_test.py ERROR test/data_tests/data_utilities_test.py ERROR test/data_tests/layers_test.py ERROR test/plotting_tests/itol_plotting_test.py ERROR test/preprocess_tests/align_sequence_test.py ERROR test/preprocess_tests/call_alleles_test.py ERROR test/preprocess_tests/call_lineage_groups_test.py ERROR test/preprocess_tests/character_matrix_test.py ERROR test/preprocess_tests/collapse_umi_test.py ERROR test/preprocess_tests/config_parser_test.py ERROR test/preprocess_tests/convert_fastqs_to_unmapped_bam_test.py ERROR test/preprocess_tests/error_correct_cellbcs_to_whitelist_test.py ERROR test/preprocess_tests/error_correct_intbcs_to_whitelist_test.py ERROR test/preprocess_tests/error_correct_umi_test.py ERROR test/preprocess_tests/filter_bam_test.py ERROR test/preprocess_tests/filter_molecule_table_test.py ERROR test/preprocess_tests/resolve_umi_sequence_test.py ERROR test/simulator_tests/birth_death_simulator_test.py ERROR test/simulator_tests/cas9_lineage_tracing_simulator_test.py ERROR test/simulator_tests/complete_binary_simulator_test.py ERROR test/simulator_tests/simple_fit_subclone_simulator_test.py ERROR test/simulator_tests/supercellular_sampler_test.py ERROR test/simulator_tests/unifom_leaf_subsampler_test.py ERROR test/solver_tests/dissimilarity_functions_test.py ERROR test/solver_tests/greedy_variants_test.py ERROR test/solver_tests/hybrid_solver_test.py ERROR test/solver_tests/ilp_solver_test.py ERROR test/solver_tests/maxcut_test.py ERROR test/solver_tests/neighborjoining_solver_test.py ERROR test/solver_tests/percolation_test.py ERROR test/solver_tests/sharedmutationjoiner_test.py ERROR test/solver_tests/spectral_test.py ERROR test/solver_tests/upgma_test.py ERROR test/solver_tests/vanillagreedy_test.py !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Interrupted: 35 errors during collection !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! ====================================== 1 warning, 35 errors in 38.52s ======================================= make: *** [Makefile:30: test] Error 2 ) == 2024-03-25 18:31:54,849 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previously undefined) == 2024-03-25 18:31:54,849 pythonpackage.py:972 INFO Detection of downloaded depenencies enabled, checking output of installation command... == 2024-03-25 18:31:54,850 pythonpackage.py:229 INFO Determining pip version... == 2024-03-25 18:31:54,850 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip --version == 2024-03-25 18:32:00,786 pythonpackage.py:237 INFO Found pip version: 23.1.2 == 2024-03-25 18:32:00,787 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip check == 2024-03-25 18:32:06,976 pythonpackage.py:1040 INFO `/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip check` completed successfully == 2024-03-25 18:32:06,976 pythonpackage.py:558 INFO Running command '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip list --isolated --disable-pip-version-check --format json' == 2024-03-25 18:32:08,341 pythonpackage.py:1066 INFO Found 0 invalid packages out of 219 packages == 2024-03-25 18:32:08,342 run.py:247 INFO running cmd: python -c "import hatch_nodejs_version" == 2024-03-25 18:32:08,416 extensioneasyblock.py:204 INFO Sanity check for hatch_nodejs_version successful! == 2024-03-25 18:32:08,416 easyblock.py:3517 INFO Sanity check for 'hatch_nodejs_version' extension passed! == 2024-03-25 18:32:08,416 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') == 2024-03-25 18:32:08,416 pythonpackage.py:972 INFO Detection of downloaded depenencies enabled, checking output of installation command... == 2024-03-25 18:32:08,417 pythonpackage.py:229 INFO Determining pip version... == 2024-03-25 18:32:08,417 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip --version == 2024-03-25 18:32:08,781 pythonpackage.py:237 INFO Found pip version: 23.1.2 == 2024-03-25 18:32:08,781 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip check == 2024-03-25 18:32:10,375 pythonpackage.py:1040 INFO `/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip check` completed successfully == 2024-03-25 18:32:10,375 pythonpackage.py:558 INFO Running command '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip list --isolated --disable-pip-version-check --format json' == 2024-03-25 18:32:11,112 pythonpackage.py:1066 INFO Found 0 invalid packages out of 219 packages == 2024-03-25 18:32:11,113 run.py:247 INFO running cmd: python -c "import ngs_tools" == 2024-03-25 18:32:17,702 extensioneasyblock.py:204 INFO Sanity check for ngs-tools successful! == 2024-03-25 18:32:17,702 easyblock.py:3517 INFO Sanity check for 'ngs-tools' extension passed! == 2024-03-25 18:32:17,702 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') == 2024-03-25 18:32:17,702 pythonpackage.py:972 INFO Detection of downloaded depenencies enabled, checking output of installation command... == 2024-03-25 18:32:17,702 pythonpackage.py:229 INFO Determining pip version... == 2024-03-25 18:32:17,702 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip --version == 2024-03-25 18:32:18,157 pythonpackage.py:237 INFO Found pip version: 23.1.2 == 2024-03-25 18:32:18,158 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip check == 2024-03-25 18:32:19,929 pythonpackage.py:1040 INFO `/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip check` completed successfully == 2024-03-25 18:32:19,929 pythonpackage.py:558 INFO Running command '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip list --isolated --disable-pip-version-check --format json' == 2024-03-25 18:32:20,681 pythonpackage.py:1066 INFO Found 0 invalid packages out of 219 packages == 2024-03-25 18:32:20,682 run.py:247 INFO running cmd: python -c "import nbformat" == 2024-03-25 18:32:21,840 extensioneasyblock.py:204 INFO Sanity check for nbformat successful! == 2024-03-25 18:32:21,841 easyblock.py:3517 INFO Sanity check for 'nbformat' extension passed! == 2024-03-25 18:32:21,841 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') == 2024-03-25 18:32:21,841 pythonpackage.py:972 INFO Detection of downloaded depenencies enabled, checking output of installation command... == 2024-03-25 18:32:21,841 pythonpackage.py:229 INFO Determining pip version... == 2024-03-25 18:32:21,841 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip --version == 2024-03-25 18:32:22,204 pythonpackage.py:237 INFO Found pip version: 23.1.2 == 2024-03-25 18:32:22,205 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip check == 2024-03-25 18:32:23,774 pythonpackage.py:1040 INFO `/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip check` completed successfully == 2024-03-25 18:32:23,775 pythonpackage.py:558 INFO Running command '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip list --isolated --disable-pip-version-check --format json' == 2024-03-25 18:32:24,508 pythonpackage.py:1066 INFO Found 0 invalid packages out of 219 packages == 2024-03-25 18:32:24,509 run.py:247 INFO running cmd: python -c "import nbconvert" == 2024-03-25 18:32:30,149 extensioneasyblock.py:204 INFO Sanity check for nbconvert successful! == 2024-03-25 18:32:30,149 easyblock.py:3517 INFO Sanity check for 'nbconvert' extension passed! == 2024-03-25 18:32:30,149 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') == 2024-03-25 18:32:30,150 pythonpackage.py:972 INFO Detection of downloaded depenencies enabled, checking output of installation command... == 2024-03-25 18:32:30,150 pythonpackage.py:229 INFO Determining pip version... == 2024-03-25 18:32:30,150 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip --version == 2024-03-25 18:32:30,831 pythonpackage.py:237 INFO Found pip version: 23.1.2 == 2024-03-25 18:32:30,832 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip check == 2024-03-25 18:32:32,866 pythonpackage.py:1040 INFO `/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip check` completed successfully == 2024-03-25 18:32:32,866 pythonpackage.py:558 INFO Running command '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip list --isolated --disable-pip-version-check --format json' == 2024-03-25 18:32:33,653 pythonpackage.py:1066 INFO Found 0 invalid packages out of 219 packages == 2024-03-25 18:32:33,654 run.py:247 INFO running cmd: python -c "import itolapi" == 2024-03-25 18:32:35,180 extensioneasyblock.py:204 INFO Sanity check for itolapi successful! == 2024-03-25 18:32:35,180 easyblock.py:3517 INFO Sanity check for 'itolapi' extension passed! == 2024-03-25 18:32:35,181 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') == 2024-03-25 18:32:35,181 pythonpackage.py:972 INFO Detection of downloaded depenencies enabled, checking output of installation command... == 2024-03-25 18:32:35,181 pythonpackage.py:229 INFO Determining pip version... == 2024-03-25 18:32:35,181 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip --version == 2024-03-25 18:32:35,531 pythonpackage.py:237 INFO Found pip version: 23.1.2 == 2024-03-25 18:32:35,532 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip check == 2024-03-25 18:32:37,097 pythonpackage.py:1040 INFO `/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip check` completed successfully == 2024-03-25 18:32:37,097 pythonpackage.py:558 INFO Running command '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip list --isolated --disable-pip-version-check --format json' == 2024-03-25 18:32:37,829 pythonpackage.py:1066 INFO Found 0 invalid packages out of 219 packages == 2024-03-25 18:32:37,830 run.py:247 INFO running cmd: python -c "import hits" == 2024-03-25 18:32:37,892 extensioneasyblock.py:204 INFO Sanity check for hits successful! == 2024-03-25 18:32:37,892 easyblock.py:3517 INFO Sanity check for 'hits' extension passed! == 2024-03-25 18:32:37,893 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') == 2024-03-25 18:32:37,893 pythonpackage.py:972 INFO Detection of downloaded depenencies enabled, checking output of installation command... == 2024-03-25 18:32:37,893 pythonpackage.py:229 INFO Determining pip version... == 2024-03-25 18:32:37,893 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip --version == 2024-03-25 18:32:38,239 pythonpackage.py:237 INFO Found pip version: 23.1.2 == 2024-03-25 18:32:38,240 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip check == 2024-03-25 18:32:39,800 pythonpackage.py:1040 INFO `/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip check` completed successfully == 2024-03-25 18:32:39,801 pythonpackage.py:558 INFO Running command '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip list --isolated --disable-pip-version-check --format json' == 2024-03-25 18:32:40,553 pythonpackage.py:1066 INFO Found 0 invalid packages out of 219 packages == 2024-03-25 18:32:40,553 extension.py:274 INFO modulename set to False for 'Levenshtein' extension, so skipping sanity check == 2024-03-25 18:32:40,553 extensioneasyblock.py:204 INFO Sanity check for Levenshtein successful! == 2024-03-25 18:32:40,553 easyblock.py:3517 INFO Sanity check for 'Levenshtein' extension passed! == 2024-03-25 18:32:40,553 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') == 2024-03-25 18:32:40,553 pythonpackage.py:972 INFO Detection of downloaded depenencies enabled, checking output of installation command... == 2024-03-25 18:32:40,554 pythonpackage.py:229 INFO Determining pip version... == 2024-03-25 18:32:40,554 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip --version == 2024-03-25 18:32:40,906 pythonpackage.py:237 INFO Found pip version: 23.1.2 == 2024-03-25 18:32:40,907 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip check == 2024-03-25 18:32:42,452 pythonpackage.py:1040 INFO `/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip check` completed successfully == 2024-03-25 18:32:42,453 pythonpackage.py:558 INFO Running command '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip list --isolated --disable-pip-version-check --format json' == 2024-03-25 18:32:43,185 pythonpackage.py:1066 INFO Found 0 invalid packages out of 219 packages == 2024-03-25 18:32:43,185 run.py:247 INFO running cmd: python -c "import Levenshtein" == 2024-03-25 18:32:44,953 extensioneasyblock.py:204 INFO Sanity check for python-Levenshtein successful! == 2024-03-25 18:32:44,953 easyblock.py:3517 INFO Sanity check for 'python-Levenshtein' extension passed! == 2024-03-25 18:32:44,954 environment.py:93 INFO Environment variable PYTHONNOUSERSITE set to 1 (previous value: '1') == 2024-03-25 18:32:44,954 pythonpackage.py:972 INFO Detection of downloaded depenencies enabled, checking output of installation command... == 2024-03-25 18:32:44,954 pythonpackage.py:229 INFO Determining pip version... == 2024-03-25 18:32:44,954 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip --version == 2024-03-25 18:32:45,305 pythonpackage.py:237 INFO Found pip version: 23.1.2 == 2024-03-25 18:32:45,306 run.py:247 INFO running cmd: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip check == 2024-03-25 18:32:46,869 pythonpackage.py:1040 INFO `/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip check` completed successfully == 2024-03-25 18:32:46,869 pythonpackage.py:558 INFO Running command '/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip list --isolated --disable-pip-version-check --format json' == 2024-03-25 18:32:47,600 pythonpackage.py:1066 INFO Found 0 invalid packages out of 219 packages == 2024-03-25 18:32:47,600 run.py:247 INFO running cmd: python -c "import cassiopeia" == 2024-03-25 18:33:19,329 extensioneasyblock.py:204 INFO Sanity check for Cassiopeia successful! == 2024-03-25 18:33:19,330 easyblock.py:3517 INFO Sanity check for 'Cassiopeia' extension passed! == 2024-03-25 18:33:19,330 easyblock.py:3234 INFO Checking for banned/required linked shared libraries... == 2024-03-25 18:33:19,330 run.py:247 INFO running cmd: flexiblas list == 2024-03-25 18:33:19,492 easyblock.py:3256 INFO Banned libraries to check for: libimkl_gnu_thread.so, libimkl_sequential.so, libopenblas.so, libblis.so, libnetlib.so == 2024-03-25 18:33:19,493 easyblock.py:3296 INFO Using default subdirectories to check for banned/required linked shared libraries: ('bin', 'lib', 'lib64') == 2024-03-25 18:33:19,495 run.py:247 INFO running cmd: file /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/bin/itolexport == 2024-03-25 18:33:19,529 run.py:247 INFO running cmd: file /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/bin/jupyter-nbconvert == 2024-03-25 18:33:19,556 run.py:247 INFO running cmd: file /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/bin/itol == 2024-03-25 18:33:19,581 run.py:247 INFO running cmd: file /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/bin/jupyter-dejavu == 2024-03-25 18:33:19,606 run.py:247 INFO running cmd: file /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/bin/jupyter-trust == 2024-03-25 18:33:19,632 run.py:247 INFO running cmd: file /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/bin/cassiopeia-preprocess == 2024-03-25 18:33:19,657 run.py:247 INFO running cmd: file /kyukon/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Cassiopeia/2.0.0-foss-2023a/lib/python3.11 == 2024-03-25 18:33:26,103 filetools.py:383 INFO Path /tmp/vsc47063/eb-78i3uhl1/tmpf9srndro successfully removed. == 2024-03-25 18:33:26,103 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_PATH set to 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== 2024-03-25 18:33:26,104 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_MODULEPATH set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all:2;/apps/gent/RHEL8/cascadelake-ampere-ib/modules/all:1;/apps/gent/RHEL8/cascadelake-ib/modules/all:1;/etc/modulefiles/vsc:1 (previous value: '/tmp/vsc47063/eb-78i3uhl1/tmpf9srndro/all:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/modules/all:2;/apps/gent/RHEL8/cascadelake-ampere-ib/modules/all:1;/apps/gent/RHEL8/cascadelake-ib/modules/all:1;/etc/modulefiles/vsc:1') == 2024-03-25 18:33:26,104 environment.py:93 INFO Environment variable LOADEDMODULES set to env/vsc/donphan:env/slurm/donphan:env/software/donphan:cluster/donphan:GCCcore/12.3.0:zlib/1.2.13-GCCcore-12.3.0:binutils/2.40-GCCcore-12.3.0:GCC/12.3.0:numactl/2.0.16-GCCcore-12.3.0:XZ/5.4.2-GCCcore-12.3.0:libxml2/2.11.4-GCCcore-12.3.0:libpciaccess/0.17-GCCcore-12.3.0:hwloc/2.9.1-GCCcore-12.3.0:OpenSSL/1.1:libevent/2.1.12-GCCcore-12.3.0:UCX/1.14.1-GCCcore-12.3.0:libfabric/1.18.0-GCCcore-12.3.0:PMIx/4.2.4-GCCcore-12.3.0:UCC/1.2.0-GCCcore-12.3.0:OpenMPI/4.1.5-GCC-12.3.0:OpenBLAS/0.3.23-GCC-12.3.0:FlexiBLAS/3.3.1-GCC-12.3.0:FFTW/3.3.10-GCC-12.3.0:gompi/2023a:FFTW.MPI/3.3.10-gompi-2023a:ScaLAPACK/2.2.0-gompi-2023a-fb:foss/2023a:ncurses/6.4-GCCcore-12.3.0:bzip2/1.0.8-GCCcore-12.3.0:cURL/8.0.1-GCCcore-12.3.0:libarchive/3.6.2-GCCcore-12.3.0:CMake/3.26.3-GCCcore-12.3.0:libreadline/8.2-GCCcore-12.3.0:Tcl/8.6.13-GCCcore-12.3.0:SQLite/3.42.0-GCCcore-12.3.0:libffi/3.4.4-GCCcore-12.3.0:Python/3.11.3-GCCcore-12.3.0:cffi/1.15.1-GCCcore-12.3.0:cryptography/41.0.1-GCCcore-12.3.0:virtualenv/20.23.1-GCCcore-12.3.0:Python-bundle-PyPI/2023.06-GCCcore-12.3.0:gfbf/2023a:pybind11/2.11.1-GCCcore-12.3.0:SciPy-bundle/2023.07-gfbf-2023a:Biopython/1.83-foss-2023a:scikit-build/0.17.6-GCCcore-12.3.0:libpng/1.6.39-GCCcore-12.3.0:Brotli/1.0.9-GCCcore-12.3.0:freetype/2.13.0-GCCcore-12.3.0:expat/2.5.0-GCCcore-12.3.0:util-linux/2.39-GCCcore-12.3.0:fontconfig/2.14.2-GCCcore-12.3.0:xorg-macros/1.20.0-GCCcore-12.3.0:X11/20230603-GCCcore-12.3.0:Tk/8.6.13-GCCcore-12.3.0:Tkinter/3.11.3-GCCcore-12.3.0:NASM/2.16.01-GCCcore-12.3.0:libjpeg-turbo/2.1.5.1-GCCcore-12.3.0:jbigkit/2.1-GCCcore-12.3.0:gzip/1.12-GCCcore-12.3.0:lz4/1.9.4-GCCcore-12.3.0:zstd/1.5.5-GCCcore-12.3.0:libdeflate/1.18-GCCcore-12.3.0:LibTIFF/4.5.0-GCCcore-12.3.0:Pillow/10.0.0-GCCcore-12.3.0:Qhull/2020.2-GCCcore-12.3.0:Ninja/1.11.1-GCCcore-12.3.0:Meson/1.1.1-GCCcore-12.3.0:meson-python/0.13.2-GCCcore-12.3.0:libyaml/0.2.5-GCCcore-12.3.0:giflib/5.2.1-GCCcore-12.3.0:libwebp/1.3.1-GCCcore-12.3.0:Pillow-SIMD/9.5.0-GCCcore-12.3.0:tornado/6.3.2-GCCcore-12.3.0:bokeh/3.2.2-foss-2023a:matplotlib/3.7.2-gfbf-2023a:networkx/3.1-gfbf-2023a:numba/0.58.1-foss-2023a:Pysam/0.22.0-GCC-12.3.0:PyYAML/6.0-GCCcore-12.3.0:typing-extensions/4.9.0-GCCcore-12.3.0:tqdm/4.66.1-GCCcore-12.3.0:hatchling/1.18.0-GCCcore-12.3.0 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== 2024-03-25 18:33:26,105 environment.py:93 INFO Environment variable PATH set to 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== 2024-03-25 18:33:26,105 environment.py:93 INFO Environment variable _LMFILES_ set to 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(previous value: 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== 2024-03-25 18:33:26,105 environment.py:93 INFO Environment variable _ModuleTable005_ set to 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 (previous value: 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/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/share/aclocal:1;/apps/gent/RHEL8/cascadelake-ib/software/xorg-macros/1.20.0-GCCcore-12.3.0/share/aclocal:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/share/aclocal:1;/apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/share/aclocal:1;/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/share/aclocal:1;/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/share/aclocal:1 (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/share/aclocal:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/share/aclocal:1;/apps/gent/RHEL8/cascadelake-ib/software/xorg-macros/1.20.0-GCCcore-12.3.0/share/aclocal:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/share/aclocal:1;/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/share/aclocal:1') == 2024-03-25 18:33:26,105 environment.py:93 INFO Environment variable ACLOCAL_PATH set to 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== 2024-03-25 18:33:26,106 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_CPATH set to 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(previous value: 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== 2024-03-25 18:33:26,106 environment.py:93 INFO Environment variable CPATH set to 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== 2024-03-25 18:33:26,106 environment.py:93 INFO Environment variable EBDEVELCMAKE set to /apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0/easybuild/CMake-3.26.3-GCCcore-12.3.0-easybuild-devel (previously undefined) == 2024-03-25 18:33:26,106 environment.py:93 INFO Environment variable EBDEVELLIBARCHIVE set to /apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/easybuild/libarchive-3.6.2-GCCcore-12.3.0-easybuild-devel (previously undefined) == 2024-03-25 18:33:26,106 environment.py:93 INFO Environment variable EBROOTCMAKE set to /apps/gent/RHEL8/cascadelake-ib/software/CMake/3.26.3-GCCcore-12.3.0 (previously undefined) == 2024-03-25 18:33:26,106 environment.py:93 INFO Environment variable EBROOTLIBARCHIVE set to /apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0 (previously undefined) == 2024-03-25 18:33:26,106 environment.py:93 INFO Environment variable EBVERSIONCMAKE set to 3.26.3 (previously undefined) == 2024-03-25 18:33:26,106 environment.py:93 INFO Environment variable EBVERSIONLIBARCHIVE set to 3.6.2 (previously undefined) == 2024-03-25 18:33:26,106 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_LD_LIBRARY_PATH set to /apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/lib:1;/apps/gent/RHEL8/cascadelake-ib/software/giflib/5.2.1-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libyaml/0.2.5-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/jbigkit/2.1-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/lib:1;/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/lib:1;/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/lib:1 (previous value: 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== 2024-03-25 18:33:26,107 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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== 2024-03-25 18:33:26,107 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_LIBRARY_PATH set to 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(previous value: 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scadelake-ib/software/libpciaccess/0.17-GCCcore-12.3.0/lib:1;/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/lib:1;/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/lib:1;/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/lib:1;/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.40-GCCcore-12.3.0/lib:1;/apps/gent/RHEL8/cascadelake-ib/software/zlib/1.2.13-GCCcore-12.3.0/lib:1') == 2024-03-25 18:33:26,107 environment.py:93 INFO Environment variable LIBRARY_PATH set to 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== 2024-03-25 18:33:26,107 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_MANPATH set to 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== 2024-03-25 18:33:26,107 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_PKG_CONFIG_PATH set to 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== 2024-03-25 18:33:26,107 environment.py:93 INFO Environment variable PKG_CONFIG_PATH set to /apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libyaml/0.2.5-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/share/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/xorg-macros/1.20.0-GCCcore-12.3.0/share/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/share/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/libffi/3.4.4-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/libreadline/8.2-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.6.2-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/OpenBLAS/0.3.23-GCC-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/libpciaccess/0.17-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/zlib/1.2.13-GCCcore-12.3.0/lib/pkgconfig (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/cURL/8.0.1-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/libwebp/1.3.1-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libyaml/0.2.5-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Qhull/2020.2-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/LibTIFF/4.5.0-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libdeflate/1.18-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/zstd/1.5.5-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/lz4/1.9.4-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Tk/8.6.13-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/share/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/X11/20230603-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/xorg-macros/1.20.0-GCCcore-12.3.0/share/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/fontconfig/2.14.2-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/util-linux/2.39-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.5.0-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/freetype/2.13.0-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Brotli/1.0.9-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libpng/1.6.39-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.11.1-GCCcore-12.3.0/share/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/libffi/3.4.4-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.42.0-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.13-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/libreadline/8.2-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/OpenBLAS/0.3.23-GCC-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PMIx/4.2.4-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libfabric/1.18.0-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/UCX/1.14.1-GCCcore-12.3.0/lib/pkgconfig:/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/libevent/2.1.12-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.9.1-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/libpciaccess/0.17-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.11.4-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.4.2-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.16-GCCcore-12.3.0/lib/pkgconfig:/apps/gent/RHEL8/cascadelake-ib/software/zlib/1.2.13-GCCcore-12.3.0/lib/pkgconfig') == 2024-03-25 18:33:26,107 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_XDG_DATA_DIRS set to 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environment.py:93 INFO Environment variable _ModuleTable073_ set to 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 (previous value: 'L2d2bzAwMTE3L2Vhc3lidWlsZC9SSEVMOC9jYXNjYWRlbGFrZS1hbXBlcmUtaWIvbW9kdWxlcy9hbGwiCiwgIi9hcHBzL2dlbnQvUkhFTDgvY2FzY2FkZWxha2UtYW1wZXJlLWliL21vZHVsZXMvYWxsIiwgIi9hcHBzL2dlbnQvUkhFTDgvY2FzY2FkZWxha2UtaWIvbW9kdWxlcy9hbGwiLCAiL2V0Yy9tb2R1bGVmaWxlcy92c2MiLAp9LApzeXN0ZW1CYXNlTVBBVEggPSAiL2V0Yy9tb2R1bGVmaWxlcy92c2MiLAp9Cg==') == 2024-03-25 18:33:26,114 environment.py:93 INFO Environment variable _ModuleTable074_ set to bCIKLCAiL2FwcHMvZ2VudC9SSEVMOC9jYXNjYWRlbGFrZS1hbXBlcmUtaWIvbW9kdWxlcy9hbGwiLCAiL2FwcHMvZ2VudC9SSEVMOC9jYXNjYWRlbGFrZS1pYi9tb2R1bGVzL2FsbCIsICIvZXRjL21vZHVsZWZpbGVzL3ZzYyIsCn0sCnN5c3RlbUJhc2VNUEFUSCA9ICIvZXRjL21vZHVsZWZpbGVzL3ZzYyIsCn0K (previously undefined) == 2024-03-25 18:33:26,114 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) == 2024-03-25 18:33:26,114 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) == 2024-03-25 18:33:26,115 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) == 2024-03-25 18:33:26,115 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) == 2024-03-25 18:33:26,115 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previously undefined) == 2024-03-25 18:33:26,115 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previously undefined) == 2024-03-25 18:33:26,115 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) == 2024-03-25 18:33:26,115 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) == 2024-03-25 18:33:26,115 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) == 2024-03-25 18:33:26,115 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) == 2024-03-25 18:33:26,115 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) == 2024-03-25 18:33:26,115 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) == 2024-03-25 18:33:26,115 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) == 2024-03-25 18:33:26,115 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) == 2024-03-25 18:33:26,115 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previously undefined) == 2024-03-25 18:33:26,116 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previously undefined) == 2024-03-25 18:33:26,116 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) == 2024-03-25 18:33:26,116 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) == 2024-03-25 18:33:26,116 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) == 2024-03-25 18:33:26,116 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) == 2024-03-25 18:33:26,116 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) == 2024-03-25 18:33:26,116 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) == 2024-03-25 18:33:26,116 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) == 2024-03-25 18:33:26,116 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) == 2024-03-25 18:33:26,116 environment.py:93 INFO Environment variable CC set to gcc (previously undefined) == 2024-03-25 18:33:26,116 environment.py:93 INFO Environment variable EBVARCC set to gcc (previously undefined) == 2024-03-25 18:33:26,116 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) == 2024-03-25 18:33:26,116 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) == 2024-03-25 18:33:26,116 environment.py:93 INFO Environment variable CPPFLAGS set to -I/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) == 2024-03-25 18:33:26,117 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) == 2024-03-25 18:33:26,117 environment.py:93 INFO Environment variable CXX set to g++ (previously undefined) == 2024-03-25 18:33:26,117 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previously undefined) == 2024-03-25 18:33:26,117 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) == 2024-03-25 18:33:26,117 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) == 2024-03-25 18:33:26,117 environment.py:93 INFO Environment variable F77 set to gfortran (previously undefined) == 2024-03-25 18:33:26,117 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previously undefined) == 2024-03-25 18:33:26,117 environment.py:93 INFO Environment variable F90 set to gfortran (previously undefined) == 2024-03-25 18:33:26,117 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previously undefined) == 2024-03-25 18:33:26,117 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) == 2024-03-25 18:33:26,117 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) == 2024-03-25 18:33:26,117 environment.py:93 INFO Environment variable FC set to gfortran (previously undefined) == 2024-03-25 18:33:26,117 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previously undefined) == 2024-03-25 18:33:26,118 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) == 2024-03-25 18:33:26,118 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) == 2024-03-25 18:33:26,118 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) == 2024-03-25 18:33:26,118 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) == 2024-03-25 18:33:26,118 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previously undefined) == 2024-03-25 18:33:26,118 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previously undefined) == 2024-03-25 18:33:26,118 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previously undefined) == 2024-03-25 18:33:26,118 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previously undefined) == 2024-03-25 18:33:26,118 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previously undefined) == 2024-03-25 18:33:26,118 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previously undefined) == 2024-03-25 18:33:26,118 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) == 2024-03-25 18:33:26,118 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) == 2024-03-25 18:33:26,118 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined) == 2024-03-25 18:33:26,118 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined) == 2024-03-25 18:33:26,119 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) == 2024-03-25 18:33:26,119 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) == 2024-03-25 18:33:26,119 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previously undefined) == 2024-03-25 18:33:26,119 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/include (previously undefined) == 2024-03-25 18:33:26,119 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previously undefined) == 2024-03-25 18:33:26,119 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib (previously undefined) == 2024-03-25 18:33:26,119 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previously undefined) == 2024-03-25 18:33:26,119 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previously undefined) == 2024-03-25 18:33:26,119 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) == 2024-03-25 18:33:26,119 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) == 2024-03-25 18:33:26,119 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined) == 2024-03-25 18:33:26,119 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined) == 2024-03-25 18:33:26,119 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) == 2024-03-25 18:33:26,119 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) == 2024-03-25 18:33:26,120 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previously undefined) == 2024-03-25 18:33:26,120 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) == 2024-03-25 18:33:26,120 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) == 2024-03-25 18:33:26,120 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) == 2024-03-25 18:33:26,120 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previously undefined) == 2024-03-25 18:33:26,120 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previously undefined) == 2024-03-25 18:33:26,120 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) == 2024-03-25 18:33:26,120 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) == 2024-03-25 18:33:26,120 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) == 2024-03-25 18:33:26,120 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) == 2024-03-25 18:33:26,120 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) == 2024-03-25 18:33:26,120 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) == 2024-03-25 18:33:26,120 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) == 2024-03-25 18:33:26,120 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) == 2024-03-25 18:33:26,121 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib -L/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib -L/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib -L/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib (previously undefined) == 2024-03-25 18:33:26,121 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/hatchling/1.18.0-GCCcore-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/tqdm/4.66.1-GCCcore-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyYAML/6.0-GCCcore-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Pysam/0.22.0-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/numba/0.58.1-foss-2023a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/networkx/3.1-gfbf-2023a/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/matplotlib/3.7.2-gfbf-2023a/lib -L/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/bokeh/3.2.2-foss-2023a/lib -L/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/scikit-build/0.17.6-GCCcore-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Biopython/1.83-foss-2023a/lib -L/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-GCC-12.3.0/lib -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/12.3.0/lib (previously undefined) == 2024-03-25 18:33:26,121 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previously undefined) == 2024-03-25 18:33:26,121 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previously undefined) == 2024-03-25 18:33:26,121 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previously undefined) == 2024-03-25 18:33:26,121 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previously undefined) == 2024-03-25 18:33:26,121 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined) == 2024-03-25 18:33:26,121 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined) == 2024-03-25 18:33:26,121 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined) == 2024-03-25 18:33:26,121 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined) == 2024-03-25 18:33:26,121 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previously undefined) == 2024-03-25 18:33:26,121 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previously undefined) == 2024-03-25 18:33:26,122 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previously undefined) == 2024-03-25 18:33:26,122 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previously undefined) == 2024-03-25 18:33:26,122 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previously undefined) == 2024-03-25 18:33:26,122 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previously undefined) == 2024-03-25 18:33:26,122 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) == 2024-03-25 18:33:26,122 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) == 2024-03-25 18:33:26,122 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) == 2024-03-25 18:33:26,122 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) == 2024-03-25 18:33:26,122 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) == 2024-03-25 18:33:26,122 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) == 2024-03-25 18:33:26,122 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previously undefined) == 2024-03-25 18:33:26,122 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previously undefined) == 2024-03-25 18:33:26,122 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) == 2024-03-25 18:33:26,122 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) == 2024-03-25 18:33:26,123 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) == 2024-03-25 18:33:26,123 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) == 2024-03-25 18:33:26,123 environment.py:93 INFO Environment variable MPICC set to mpicc (previously undefined) == 2024-03-25 18:33:26,123 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previously undefined) == 2024-03-25 18:33:26,123 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previously undefined) == 2024-03-25 18:33:26,123 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined) == 2024-03-25 18:33:26,123 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previously undefined) == 2024-03-25 18:33:26,123 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined) == 2024-03-25 18:33:26,123 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previously undefined) == 2024-03-25 18:33:26,123 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined) == 2024-03-25 18:33:26,123 environment.py:93 INFO Environment variable MPIFC set to mpifort (previously undefined) == 2024-03-25 18:33:26,123 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined) == 2024-03-25 18:33:26,123 environment.py:93 INFO Environment variable MPI_INC_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include (previously undefined) == 2024-03-25 18:33:26,123 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/include (previously undefined) == 2024-03-25 18:33:26,124 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64 (previously undefined) == 2024-03-25 18:33:26,124 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64 (previously undefined) == 2024-03-25 18:33:26,124 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so (previously undefined) == 2024-03-25 18:33:26,124 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so (previously undefined) == 2024-03-25 18:33:26,124 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previously undefined) == 2024-03-25 18:33:26,124 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined) == 2024-03-25 18:33:26,124 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previously undefined) == 2024-03-25 18:33:26,124 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined) == 2024-03-25 18:33:26,124 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previously undefined) == 2024-03-25 18:33:26,124 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined) == 2024-03-25 18:33:26,124 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previously undefined) == 2024-03-25 18:33:26,124 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined) == 2024-03-25 18:33:26,124 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previously undefined) == 2024-03-25 18:33:26,125 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined) == 2024-03-25 18:33:26,125 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previously undefined) == 2024-03-25 18:33:26,125 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined) == 2024-03-25 18:33:26,125 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) == 2024-03-25 18:33:26,125 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) == 2024-03-25 18:33:26,125 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) == 2024-03-25 18:33:26,125 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) == 2024-03-25 18:33:26,125 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previously undefined) == 2024-03-25 18:33:26,125 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previously undefined) == 2024-03-25 18:33:26,125 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib (previously undefined) == 2024-03-25 18:33:26,125 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib (previously undefined) == 2024-03-25 18:33:26,125 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) == 2024-03-25 18:33:26,125 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) == 2024-03-25 18:33:26,125 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) == 2024-03-25 18:33:26,126 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) == 2024-03-25 18:33:26,126 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) == 2024-03-25 18:33:26,126 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) == 2024-03-25 18:33:26,126 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) == 2024-03-25 18:33:26,126 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) == 2024-03-25 18:33:26,418 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/easybuild-framework/easybuild/base/exceptions.py:126 in __init__): Sanity check failed: sanity check command cd /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-* && make test exited with code 2 (output: python -m pytest -vv ./test ============================================ test session starts ============================================ platform linux -- Python 3.11.3, pytest-7.4.0, pluggy-1.2.0 -- /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/bin/python cachedir: .pytest_cache rootdir: /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0 plugins: xdist-3.3.1 collecting ... collected 1 item / 35 errors ================================================== ERRORS =================================================== _________________________ ERROR collecting test/critique_tests/test_tree_compare.py _________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/critique_tests/test_tree_compare.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/critique_tests/test_tree_compare.py:11: in import cassiopeia as cas cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' _________________________ ERROR collecting test/data_tests/cassiopeia_tree_test.py __________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/data_tests/cassiopeia_tree_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/data_tests/cassiopeia_tree_test.py:14: in import cassiopeia as cas cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' __________________________ ERROR collecting test/data_tests/data_utilities_test.py __________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/data_tests/data_utilities_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/data_tests/data_utilities_test.py:12: in from cassiopeia.data import utilities as data_utilities cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ______________________________ ERROR collecting test/data_tests/layers_test.py ______________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/data_tests/layers_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/data_tests/layers_test.py:13: in import cassiopeia as cas cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ________________________ ERROR collecting test/plotting_tests/itol_plotting_test.py _________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/plotting_tests/itol_plotting_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/plotting_tests/itol_plotting_test.py:17: in import cassiopeia as cas cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' _______________________ ERROR collecting test/preprocess_tests/align_sequence_test.py _______________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/preprocess_tests/align_sequence_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/preprocess_tests/align_sequence_test.py:9: in import cassiopeia cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ________________________ ERROR collecting test/preprocess_tests/call_alleles_test.py ________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/preprocess_tests/call_alleles_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/preprocess_tests/call_alleles_test.py:9: in import cassiopeia cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ____________________ ERROR collecting test/preprocess_tests/call_lineage_groups_test.py _____________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/preprocess_tests/call_lineage_groups_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/preprocess_tests/call_lineage_groups_test.py:8: in import cassiopeia cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ______________________ ERROR collecting test/preprocess_tests/character_matrix_test.py ______________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/preprocess_tests/character_matrix_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/preprocess_tests/character_matrix_test.py:9: in import cassiopeia as cas cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ________________________ ERROR collecting test/preprocess_tests/collapse_umi_test.py ________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/preprocess_tests/collapse_umi_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/preprocess_tests/collapse_umi_test.py:11: in from cassiopeia.preprocess import UMI_utils cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' _______________________ ERROR collecting test/preprocess_tests/config_parser_test.py ________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/preprocess_tests/config_parser_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/preprocess_tests/config_parser_test.py:11: in from cassiopeia.preprocess import cassiopeia_preprocess cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' _______________ ERROR collecting test/preprocess_tests/convert_fastqs_to_unmapped_bam_test.py _______________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/preprocess_tests/convert_fastqs_to_unmapped_bam_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/preprocess_tests/convert_fastqs_to_unmapped_bam_test.py:11: in from cassiopeia.preprocess import pipeline cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' _____________ ERROR collecting test/preprocess_tests/error_correct_cellbcs_to_whitelist_test.py _____________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/preprocess_tests/error_correct_cellbcs_to_whitelist_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/preprocess_tests/error_correct_cellbcs_to_whitelist_test.py:11: in from cassiopeia.preprocess import pipeline cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' _____________ ERROR collecting test/preprocess_tests/error_correct_intbcs_to_whitelist_test.py ______________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/preprocess_tests/error_correct_intbcs_to_whitelist_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/preprocess_tests/error_correct_intbcs_to_whitelist_test.py:7: in import cassiopeia cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' _____________________ ERROR collecting test/preprocess_tests/error_correct_umi_test.py ______________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/preprocess_tests/error_correct_umi_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/preprocess_tests/error_correct_umi_test.py:9: in import cassiopeia cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' _________________________ ERROR collecting test/preprocess_tests/filter_bam_test.py _________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/preprocess_tests/filter_bam_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/preprocess_tests/filter_bam_test.py:11: in from cassiopeia.preprocess import pipeline cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ___________________ ERROR collecting test/preprocess_tests/filter_molecule_table_test.py ____________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/preprocess_tests/filter_molecule_table_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/preprocess_tests/filter_molecule_table_test.py:6: in import cassiopeia cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ____________________ ERROR collecting test/preprocess_tests/resolve_umi_sequence_test.py ____________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/preprocess_tests/resolve_umi_sequence_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/preprocess_tests/resolve_umi_sequence_test.py:7: in from cassiopeia.preprocess import pipeline cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ____________________ ERROR collecting test/simulator_tests/birth_death_simulator_test.py ____________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/simulator_tests/birth_death_simulator_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/simulator_tests/birth_death_simulator_test.py:9: in from cassiopeia.data.CassiopeiaTree import CassiopeiaTree cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' _______________ ERROR collecting test/simulator_tests/cas9_lineage_tracing_simulator_test.py ________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/simulator_tests/cas9_lineage_tracing_simulator_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/simulator_tests/cas9_lineage_tracing_simulator_test.py:11: in import cassiopeia as cas cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' __________________ ERROR collecting test/simulator_tests/complete_binary_simulator_test.py __________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/simulator_tests/complete_binary_simulator_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/simulator_tests/complete_binary_simulator_test.py:4: in from cassiopeia.simulator import CompleteBinarySimulator, TreeSimulatorError cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ________________ ERROR collecting test/simulator_tests/simple_fit_subclone_simulator_test.py ________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/simulator_tests/simple_fit_subclone_simulator_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/simulator_tests/simple_fit_subclone_simulator_test.py:4: in from cassiopeia.simulator import SimpleFitSubcloneSimulator cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ____________________ ERROR collecting test/simulator_tests/supercellular_sampler_test.py ____________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/simulator_tests/supercellular_sampler_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/simulator_tests/supercellular_sampler_test.py:7: in from cassiopeia.data.CassiopeiaTree import CassiopeiaTree, CassiopeiaTreeError cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ___________________ ERROR collecting test/simulator_tests/unifom_leaf_subsampler_test.py ____________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/simulator_tests/unifom_leaf_subsampler_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/simulator_tests/unifom_leaf_subsampler_test.py:6: in from cassiopeia.data.CassiopeiaTree import CassiopeiaTree cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ____________________ ERROR collecting test/solver_tests/dissimilarity_functions_test.py _____________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/solver_tests/dissimilarity_functions_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/solver_tests/dissimilarity_functions_test.py:10: in from cassiopeia.solver import dissimilarity_functions cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ________________________ ERROR collecting test/solver_tests/greedy_variants_test.py _________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/solver_tests/greedy_variants_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/solver_tests/greedy_variants_test.py:7: in import cassiopeia as cas cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' _________________________ ERROR collecting test/solver_tests/hybrid_solver_test.py __________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/solver_tests/hybrid_solver_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/solver_tests/hybrid_solver_test.py:12: in import cassiopeia as cas cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ___________________________ ERROR collecting test/solver_tests/ilp_solver_test.py ___________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/solver_tests/ilp_solver_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/solver_tests/ilp_solver_test.py:13: in import cassiopeia as cas cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' _____________________________ ERROR collecting test/solver_tests/maxcut_test.py _____________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/solver_tests/maxcut_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/solver_tests/maxcut_test.py:7: in import cassiopeia as cas cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' _____________________ ERROR collecting test/solver_tests/neighborjoining_solver_test.py _____________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/solver_tests/neighborjoining_solver_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/solver_tests/neighborjoining_solver_test.py:13: in import cassiopeia as cas cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' __________________________ ERROR collecting test/solver_tests/percolation_test.py ___________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/solver_tests/percolation_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/solver_tests/percolation_test.py:14: in import cassiopeia as cas cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ______________________ ERROR collecting test/solver_tests/sharedmutationjoiner_test.py ______________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/solver_tests/sharedmutationjoiner_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/solver_tests/sharedmutationjoiner_test.py:15: in from cassiopeia.data.CassiopeiaTree import CassiopeiaTree cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ____________________________ ERROR collecting test/solver_tests/spectral_test.py ____________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/solver_tests/spectral_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/solver_tests/spectral_test.py:7: in import cassiopeia as cas cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' _____________________________ ERROR collecting test/solver_tests/upgma_test.py ______________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/solver_tests/upgma_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/solver_tests/upgma_test.py:12: in from cassiopeia.data.CassiopeiaTree import CassiopeiaTree cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' _________________________ ERROR collecting test/solver_tests/vanillagreedy_test.py __________________________ ImportError while importing test module '/tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-2.0.0/test/solver_tests/vanillagreedy_test.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/python.py:617: in _importtestmodule mod = import_path(self.path, mode=importmode, root=self.config.rootpath) /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/pathlib.py:565: in import_path importlib.import_module(module_name) /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) :1206: in _gcd_import ??? :1178: in _find_and_load ??? :1149: in _find_and_load_unlocked ??? :690: in _load_unlocked ??? /apps/gent/RHEL8/cascadelake-ib/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages/_pytest/assertion/rewrite.py:178: in exec_module exec(co, module.__dict__) test/solver_tests/vanillagreedy_test.py:7: in import cassiopeia as cas cassiopeia/__init__.py:10: in from . import pp cassiopeia/pp.py:1: in from cassiopeia.preprocess import * cassiopeia/preprocess/__init__.py:5: in from .pipeline import ( cassiopeia/preprocess/pipeline.py:24: in from cassiopeia.preprocess import ( cassiopeia/preprocess/UMI_utils.py:28: in from .collapse_cython import ( E ModuleNotFoundError: No module named 'cassiopeia.preprocess.collapse_cython' ============================================= warnings summary ============================================== ../../../../../../../../../scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages/ete3/webplugin/webapp.py:44 /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages/ete3/webplugin/webapp.py:44: DeprecationWarning: 'cgi' is deprecated and slated for removal in Python 3.13 import cgi -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ========================================== short test summary info ========================================== ERROR test/critique_tests/test_tree_compare.py ERROR test/data_tests/cassiopeia_tree_test.py ERROR test/data_tests/data_utilities_test.py ERROR test/data_tests/layers_test.py ERROR test/plotting_tests/itol_plotting_test.py ERROR test/preprocess_tests/align_sequence_test.py ERROR test/preprocess_tests/call_alleles_test.py ERROR test/preprocess_tests/call_lineage_groups_test.py ERROR test/preprocess_tests/character_matrix_test.py ERROR test/preprocess_tests/collapse_umi_test.py ERROR test/preprocess_tests/config_parser_test.py ERROR test/preprocess_tests/convert_fastqs_to_unmapped_bam_test.py ERROR test/preprocess_tests/error_correct_cellbcs_to_whitelist_test.py ERROR test/preprocess_tests/error_correct_intbcs_to_whitelist_test.py ERROR test/preprocess_tests/error_correct_umi_test.py ERROR test/preprocess_tests/filter_bam_test.py ERROR test/preprocess_tests/filter_molecule_table_test.py ERROR test/preprocess_tests/resolve_umi_sequence_test.py ERROR test/simulator_tests/birth_death_simulator_test.py ERROR test/simulator_tests/cas9_lineage_tracing_simulator_test.py ERROR test/simulator_tests/complete_binary_simulator_test.py ERROR test/simulator_tests/simple_fit_subclone_simulator_test.py ERROR test/simulator_tests/supercellular_sampler_test.py ERROR test/simulator_tests/unifom_leaf_subsampler_test.py ERROR test/solver_tests/dissimilarity_functions_test.py ERROR test/solver_tests/greedy_variants_test.py ERROR test/solver_tests/hybrid_solver_test.py ERROR test/solver_tests/ilp_solver_test.py ERROR test/solver_tests/maxcut_test.py ERROR test/solver_tests/neighborjoining_solver_test.py ERROR test/solver_tests/percolation_test.py ERROR test/solver_tests/sharedmutationjoiner_test.py ERROR test/solver_tests/spectral_test.py ERROR test/solver_tests/upgma_test.py ERROR test/solver_tests/vanillagreedy_test.py !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Interrupted: 35 errors during collection !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! ====================================== 1 warning, 35 errors in 38.52s ======================================= make: *** [Makefile:30: test] Error 2 ) (at easybuild/easybuild-framework/easybuild/framework/easyblock.py:3669 in _sanity_check_step) == 2024-03-25 18:33:26,418 build_log.py:267 INFO ... (took 2 mins 28 secs) == 2024-03-25 18:33:26,418 filetools.py:2012 INFO Removing lock /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_cascadelake-ampere-ib_software_Cassiopeia_2.0.0-foss-2023a.lock... == 2024-03-25 18:33:26,422 filetools.py:383 INFO Path /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_cascadelake-ampere-ib_software_Cassiopeia_2.0.0-foss-2023a.lock successfully removed. == 2024-03-25 18:33:26,422 filetools.py:2016 INFO Lock removed: /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/.locks/_scratch_gent_vo_001_gvo00117_easybuild_RHEL8_cascadelake-ampere-ib_software_Cassiopeia_2.0.0-foss-2023a.lock == 2024-03-25 18:33:26,422 easyblock.py:4291 WARNING build failed (first 300 chars): Sanity check failed: sanity check command cd /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-* && make test exited with code 2 (output: python -m pytest -vv ./test ============================================ test session starts ======================================= == 2024-03-25 18:33:26,425 easyblock.py:328 INFO Closing log for application name Cassiopeia version 2.0.0 == 2024-03-25 18:33:26,425 build_log.py:267 INFO FAILED: Installation ended unsuccessfully (build directory: /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a): build failed (first 300 chars): Sanity check failed: sanity check command cd /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-* && make test exited with code 2 (output: python -m pytest -vv ./test ============================================ test session starts ======================================= (took 7 mins 2 secs) == 2024-03-25 18:33:26,425 easyblock.py:4429 WARNING 71 possible error(s) were detected in the build logs, please verify the build. == 2024-03-25 18:33:26,425 build_log.py:267 INFO Results of the build can be found in the log file(s) /tmp/vsc47063/eb-78i3uhl1/easybuild-Cassiopeia-2.0.0-20240325.182623.luQUf.log == 2024-03-25 18:33:26,426 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/easybuild-framework/easybuild/base/exceptions.py:126 in __init__): build failed (first 300 chars): Sanity check failed: sanity check command cd /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-* && make test exited with code 2 (output: python -m pytest -vv ./test ============================================ test session starts ======================================= (at easybuild/easybuild-framework/easybuild/main.py:138 in build_and_install_software) == 2024-03-25 18:33:26,427 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/easybuild-framework/easybuild/base/exceptions.py:126 in __init__): Build of /kyukon/data/gent/470/vsc47063/vsc-software-stack/214_Single-cell_python_bundle/cassiopeia_pybundle.eb failed (err: 'build failed (first 300 chars): Sanity check failed: sanity check command cd /tmp/vsc47063/easybuild/build/Cassiopeia/2.0.0/foss-2023a/Cassiopeia/Cassiopeia-* && make test exited with code 2 (output: python -m pytest -vv ./test\n============================================ test session starts =======================================') (at easybuild/easybuild-framework/easybuild/main.py:176 in build_and_install_software)