From 3e0f604e7a5fc2fb60b606197a23043c94fd86f7 Mon Sep 17 00:00:00 2001
From: Harpo Harbert <ryan_harbert@wgbh.org>
Date: Fri, 23 Feb 2024 11:34:19 -0800
Subject: [PATCH] Updates dependencies to latest

---
 fastclam/__init__.py |   4 +-
 fastclam/_version.py |   2 +-
 fastclam/app.py      |   2 +-
 pdm.lock             | 694 ++++++++++++++++++++++---------------------
 pyproject.toml       |  24 +-
 5 files changed, 380 insertions(+), 346 deletions(-)

diff --git a/fastclam/__init__.py b/fastclam/__init__.py
index aba8f1d..724e9ac 100644
--- a/fastclam/__init__.py
+++ b/fastclam/__init__.py
@@ -10,6 +10,8 @@
         [localhost:8000/docs](http://localhost:8000/docs)
 
 """
+
 from ._version import __version__
+from .app import app
 
-__all__ = ['__version__']
+__all__ = ['__version__', 'app']
diff --git a/fastclam/_version.py b/fastclam/_version.py
index 7fd229a..0404d81 100644
--- a/fastclam/_version.py
+++ b/fastclam/_version.py
@@ -1 +1 @@
-__version__ = '0.2.0'
+__version__ = '0.3.0'
diff --git a/fastclam/app.py b/fastclam/app.py
index 2635028..61d9d90 100644
--- a/fastclam/app.py
+++ b/fastclam/app.py
@@ -4,7 +4,7 @@
 from xml.etree.ElementTree import ParseError
 
 import requests
-from clams.source import generate_source_mmif_from_file
+from clams.mmif_utils.source import generate_source_mmif_from_file
 from fastapi import FastAPI, HTTPException
 from fastapi.responses import PlainTextResponse
 from starlette.exceptions import HTTPException as StarletteHTTPException
diff --git a/pdm.lock b/pdm.lock
index 6e5dbfe..ff50847 100644
--- a/pdm.lock
+++ b/pdm.lock
@@ -3,10 +3,9 @@
 
 [metadata]
 groups = ["default", "dev", "test"]
-cross_platform = true
-static_urls = false
-lock_version = "4.3"
-content_hash = "sha256:f2e616705b95c064cb6f65beb6ba67ebbf57acb1958812fbf41bf944374c1c61"
+strategy = ["cross_platform"]
+lock_version = "4.4.1"
+content_hash = "sha256:48c27e80061c675a11708cf1db1605b533c1ab09e8feafb11c293312b5f10a76"
 
 [[package]]
 name = "aniso8601"
@@ -19,31 +18,31 @@ files = [
 
 [[package]]
 name = "anyio"
-version = "3.7.1"
-requires_python = ">=3.7"
+version = "4.3.0"
+requires_python = ">=3.8"
 summary = "High level compatibility layer for multiple asynchronous event loop implementations"
 dependencies = [
     "idna>=2.8",
     "sniffio>=1.1",
 ]
 files = [
-    {file = "anyio-3.7.1-py3-none-any.whl", hash = "sha256:91dee416e570e92c64041bd18b900d1d6fa78dff7048769ce5ac5ddad004fbb5"},
-    {file = "anyio-3.7.1.tar.gz", hash = "sha256:44a3c9aba0f5defa43261a8b3efb97891f2bd7d804e0e1f56419befa1adfc780"},
+    {file = "anyio-4.3.0-py3-none-any.whl", hash = "sha256:048e05d0f6caeed70d731f3db756d35dcc1f35747c8c403364a8332c630441b8"},
+    {file = "anyio-4.3.0.tar.gz", hash = "sha256:f75253795a87df48568485fd18cdd2a3fa5c4f7c5be8e5e36637733fce06fed6"},
 ]
 
 [[package]]
 name = "attrs"
-version = "23.1.0"
+version = "23.2.0"
 requires_python = ">=3.7"
 summary = "Classes Without Boilerplate"
 files = [
-    {file = "attrs-23.1.0-py3-none-any.whl", hash = "sha256:1f28b4522cdc2fb4256ac1a020c78acf9cba2c6b461ccd2c126f3aa8e8335d04"},
-    {file = "attrs-23.1.0.tar.gz", hash = "sha256:6279836d581513a26f1bf235f9acd333bc9115683f14f7e8fae46c98fc50e015"},
+    {file = "attrs-23.2.0-py3-none-any.whl", hash = "sha256:99b87a485a5820b23b879f04c2305b44b951b502fd64be915879d77a7e8fc6f1"},
+    {file = "attrs-23.2.0.tar.gz", hash = "sha256:935dc3b529c262f6cf76e50877d35a4bd3c1de194fd41f47a2b7ae8f19971f30"},
 ]
 
 [[package]]
 name = "black"
-version = "23.7.0"
+version = "24.2.0"
 requires_python = ">=3.8"
 summary = "The uncompromising code formatter."
 dependencies = [
@@ -54,63 +53,81 @@ dependencies = [
     "platformdirs>=2",
 ]
 files = [
-    {file = "black-23.7.0-cp311-cp311-macosx_10_16_arm64.whl", hash = "sha256:b5b0ee6d96b345a8b420100b7d71ebfdd19fab5e8301aff48ec270042cd40ac2"},
-    {file = "black-23.7.0-cp311-cp311-macosx_10_16_universal2.whl", hash = "sha256:893695a76b140881531062d48476ebe4a48f5d1e9388177e175d76234ca247cd"},
-    {file = "black-23.7.0-cp311-cp311-macosx_10_16_x86_64.whl", hash = "sha256:c333286dc3ddca6fdff74670b911cccedacb4ef0a60b34e491b8a67c833b343a"},
-    {file = "black-23.7.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:831d8f54c3a8c8cf55f64d0422ee875eecac26f5f649fb6c1df65316b67c8926"},
-    {file = "black-23.7.0-cp311-cp311-win_amd64.whl", hash = "sha256:7f3bf2dec7d541b4619b8ce526bda74a6b0bffc480a163fed32eb8b3c9aed8ad"},
-    {file = "black-23.7.0-py3-none-any.whl", hash = "sha256:9fd59d418c60c0348505f2ddf9609c1e1de8e7493eab96198fc89d9f865e7a96"},
-    {file = "black-23.7.0.tar.gz", hash = "sha256:022a582720b0d9480ed82576c920a8c1dde97cc38ff11d8d8859b3bd6ca9eedb"},
+    {file = "black-24.2.0-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:163baf4ef40e6897a2a9b83890e59141cc8c2a98f2dda5080dc15c00ee1e62cd"},
+    {file = "black-24.2.0-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:e37c99f89929af50ffaf912454b3e3b47fd64109659026b678c091a4cd450fb2"},
+    {file = "black-24.2.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:4f9de21bafcba9683853f6c96c2d515e364aee631b178eaa5145fc1c61a3cc92"},
+    {file = "black-24.2.0-cp311-cp311-win_amd64.whl", hash = "sha256:9db528bccb9e8e20c08e716b3b09c6bdd64da0dd129b11e160bf082d4642ac23"},
+    {file = "black-24.2.0-cp312-cp312-macosx_10_9_x86_64.whl", hash = "sha256:d84f29eb3ee44859052073b7636533ec995bd0f64e2fb43aeceefc70090e752b"},
+    {file = "black-24.2.0-cp312-cp312-macosx_11_0_arm64.whl", hash = "sha256:1e08fb9a15c914b81dd734ddd7fb10513016e5ce7e6704bdd5e1251ceee51ac9"},
+    {file = "black-24.2.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:810d445ae6069ce64030c78ff6127cd9cd178a9ac3361435708b907d8a04c693"},
+    {file = "black-24.2.0-cp312-cp312-win_amd64.whl", hash = "sha256:ba15742a13de85e9b8f3239c8f807723991fbfae24bad92d34a2b12e81904982"},
+    {file = "black-24.2.0-py3-none-any.whl", hash = "sha256:e8a6ae970537e67830776488bca52000eaa37fa63b9988e8c487458d9cd5ace6"},
+    {file = "black-24.2.0.tar.gz", hash = "sha256:bce4f25c27c3435e4dace4815bcb2008b87e167e3bf4ee47ccdc5ce906eb4894"},
 ]
 
 [[package]]
 name = "blinker"
-version = "1.6.2"
-requires_python = ">=3.7"
+version = "1.7.0"
+requires_python = ">=3.8"
 summary = "Fast, simple object-to-object and broadcast signaling"
 files = [
-    {file = "blinker-1.6.2-py3-none-any.whl", hash = "sha256:c3d739772abb7bc2860abf5f2ec284223d9ad5c76da018234f6f50d6f31ab1f0"},
-    {file = "blinker-1.6.2.tar.gz", hash = "sha256:4afd3de66ef3a9f8067559fb7a1cbe555c17dcbe15971b05d1b625c3e7abe213"},
+    {file = "blinker-1.7.0-py3-none-any.whl", hash = "sha256:c3f865d4d54db7abc53758a01601cf343fe55b84c1de4e3fa910e420b438d5b9"},
+    {file = "blinker-1.7.0.tar.gz", hash = "sha256:e6820ff6fa4e4d1d8e2747c2283749c3f547e4fee112b98555cdcdae32996182"},
 ]
 
 [[package]]
 name = "certifi"
-version = "2023.7.22"
+version = "2024.2.2"
 requires_python = ">=3.6"
 summary = "Python package for providing Mozilla's CA Bundle."
 files = [
-    {file = "certifi-2023.7.22-py3-none-any.whl", hash = "sha256:92d6037539857d8206b8f6ae472e8b77db8058fec5937a1ef3f54304089edbb9"},
-    {file = "certifi-2023.7.22.tar.gz", hash = "sha256:539cc1d13202e33ca466e88b2807e29f4c13049d6d87031a3c110744495cb082"},
+    {file = "certifi-2024.2.2-py3-none-any.whl", hash = "sha256:dc383c07b76109f368f6106eee2b593b04a011ea4d55f652c6ca24a754d1cdd1"},
+    {file = "certifi-2024.2.2.tar.gz", hash = "sha256:0569859f95fc761b18b45ef421b1290a0f65f147e92a1e5eb3e635f9a5e4e66f"},
 ]
 
 [[package]]
 name = "charset-normalizer"
-version = "3.2.0"
+version = "3.3.2"
 requires_python = ">=3.7.0"
 summary = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
 files = [
-    {file = "charset-normalizer-3.2.0.tar.gz", hash = "sha256:3bb3d25a8e6c0aedd251753a79ae98a093c7e7b471faa3aa9a93a81431987ace"},
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 ]
 
 [[package]]
 name = "clams-python"
-version = "1.0.9"
+version = "1.1.2"
 requires_python = ">=3.8"
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-version = "6.3.1"
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 summary = "Deep Difference and Search of any Python object/data. Recreate objects by adding adding deltas to each other."
 dependencies = [
     "ordered-set<4.2.0,>=4.0.2",
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+version = "0.109.2"
+requires_python = ">=3.8"
 summary = "FastAPI framework, high performance, easy to learn, fast to code, ready for production"
 dependencies = [
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-    "starlette<0.28.0,>=0.27.0",
-    "typing-extensions>=4.5.0",
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+    "starlette<0.37.0,>=0.36.3",
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 [[package]]
 name = "flask"
-version = "2.3.2"
+version = "3.0.2"
 requires_python = ">=3.8"
 summary = "A simple framework for building complex web applications."
 dependencies = [
     "Jinja2>=3.1.2",
-    "Werkzeug>=2.3.3",
+    "Werkzeug>=3.0.0",
     "blinker>=1.6.2",
     "click>=8.1.3",
     "itsdangerous>=2.1.2",
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 ]
 
 [[package]]
@@ -296,44 +315,43 @@ files = [
 
 [[package]]
 name = "httpcore"
-version = "0.17.3"
-requires_python = ">=3.7"
+version = "1.0.4"
+requires_python = ">=3.8"
 summary = "A minimal low-level HTTP client."
 dependencies = [
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     "certifi",
     "h11<0.15,>=0.13",
-    "sniffio==1.*",
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 [[package]]
 name = "httpx"
-version = "0.24.1"
-requires_python = ">=3.7"
+version = "0.27.0"
+requires_python = ">=3.8"
 summary = "The next generation HTTP client."
 dependencies = [
+    "anyio",
     "certifi",
-    "httpcore<0.18.0,>=0.15.0",
+    "httpcore==1.*",
     "idna",
     "sniffio",
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 files = [
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 [[package]]
 name = "idna"
-version = "3.4"
+version = "3.6"
 requires_python = ">=3.5"
 summary = "Internationalized Domain Names in Applications (IDNA)"
 files = [
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 [[package]]
@@ -370,20 +388,20 @@ files = [
 
 [[package]]
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-version = "3.1.2"
+version = "3.1.3"
 requires_python = ">=3.7"
 summary = "A very fast and expressive template engine."
 dependencies = [
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 files = [
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 [[package]]
 name = "jsonschema"
-version = "4.18.6"
+version = "4.21.1"
 requires_python = ">=3.8"
 summary = "An implementation of JSON Schema validation for Python"
 dependencies = [
@@ -393,21 +411,21 @@ dependencies = [
     "rpds-py>=0.7.1",
 ]
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 [[package]]
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-version = "2023.7.1"
+version = "2023.12.1"
 requires_python = ">=3.8"
 summary = "The JSON Schema meta-schemas and vocabularies, exposed as a Registry"
 dependencies = [
-    "referencing>=0.28.0",
+    "referencing>=0.31.0",
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 files = [
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 [[package]]
@@ -424,7 +442,7 @@ files = [
 
 [[package]]
 name = "loguru"
-version = "0.7.0"
+version = "0.7.2"
 requires_python = ">=3.5"
 summary = "Python logging made (stupidly) simple"
 dependencies = [
@@ -432,46 +450,49 @@ dependencies = [
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 ]
 files = [
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+version = "5.1.0"
+requires_python = ">=3.6"
 summary = "Powerful and Pythonic XML processing library combining libxml2/libxslt with the ElementTree API."
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 [[package]]
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 [[package]]
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+version = "1.0.9"
 requires_python = ">=3.8"
 summary = "Python implementation of MultiMedia Interchange Format specification. (https://mmif.clams.ai)"
 dependencies = [
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 requires_python = ">=3.7"
 summary = "Core utilities for Python packages"
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 [[package]]
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 [[package]]
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+    {file = "ruff-0.2.2-py3-none-manylinux_2_17_ppc64.manylinux2014_ppc64.whl", hash = "sha256:b0c232af3d0bd8f521806223723456ffebf8e323bd1e4e82b0befb20ba18388e"},
+    {file = "ruff-0.2.2-py3-none-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:f63d96494eeec2fc70d909393bcd76c69f35334cdbd9e20d089fb3f0640216ca"},
+    {file = "ruff-0.2.2-py3-none-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:6a61ea0ff048e06de273b2e45bd72629f470f5da8f71daf09fe481278b175001"},
+    {file = "ruff-0.2.2-py3-none-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:5e1439c8f407e4f356470e54cdecdca1bd5439a0673792dbe34a2b0a551a2fe3"},
+    {file = "ruff-0.2.2-py3-none-musllinux_1_2_aarch64.whl", hash = "sha256:940de32dc8853eba0f67f7198b3e79bc6ba95c2edbfdfac2144c8235114d6726"},
+    {file = "ruff-0.2.2-py3-none-musllinux_1_2_armv7l.whl", hash = "sha256:0c126da55c38dd917621552ab430213bdb3273bb10ddb67bc4b761989210eb6e"},
+    {file = "ruff-0.2.2-py3-none-musllinux_1_2_i686.whl", hash = "sha256:3b65494f7e4bed2e74110dac1f0d17dc8e1f42faaa784e7c58a98e335ec83d7e"},
+    {file = "ruff-0.2.2-py3-none-musllinux_1_2_x86_64.whl", hash = "sha256:1ec49be4fe6ddac0503833f3ed8930528e26d1e60ad35c2446da372d16651ce9"},
+    {file = "ruff-0.2.2-py3-none-win32.whl", hash = "sha256:d920499b576f6c68295bc04e7b17b6544d9d05f196bb3aac4358792ef6f34325"},
+    {file = "ruff-0.2.2-py3-none-win_amd64.whl", hash = "sha256:cc9a91ae137d687f43a44c900e5d95e9617cb37d4c989e462980ba27039d239d"},
+    {file = "ruff-0.2.2-py3-none-win_arm64.whl", hash = "sha256:c9d15fc41e6054bfc7200478720570078f0b41c9ae4f010bcc16bd6f4d1aacdd"},
+    {file = "ruff-0.2.2.tar.gz", hash = "sha256:e62ed7f36b3068a30ba39193a14274cd706bc486fad521276458022f7bccb31d"},
 ]
 
 [[package]]
@@ -841,40 +873,40 @@ files = [
 
 [[package]]
 name = "starlette"
-version = "0.27.0"
-requires_python = ">=3.7"
+version = "0.36.3"
+requires_python = ">=3.8"
 summary = "The little ASGI library that shines."
 dependencies = [
     "anyio<5,>=3.4.0",
 ]
 files = [
-    {file = "starlette-0.27.0-py3-none-any.whl", hash = "sha256:918416370e846586541235ccd38a474c08b80443ed31c578a418e2209b3eef91"},
-    {file = "starlette-0.27.0.tar.gz", hash = "sha256:6a6b0d042acb8d469a01eba54e9cda6cbd24ac602c4cd016723117d6a7e73b75"},
+    {file = "starlette-0.36.3-py3-none-any.whl", hash = "sha256:13d429aa93a61dc40bf503e8c801db1f1bca3dc706b10ef2434a36123568f044"},
+    {file = "starlette-0.36.3.tar.gz", hash = "sha256:90a671733cfb35771d8cc605e0b679d23b992f8dcfad48cc60b38cb29aeb7080"},
 ]
 
 [[package]]
 name = "typing-extensions"
-version = "4.7.1"
-requires_python = ">=3.7"
-summary = "Backported and Experimental Type Hints for Python 3.7+"
+version = "4.9.0"
+requires_python = ">=3.8"
+summary = "Backported and Experimental Type Hints for Python 3.8+"
 files = [
-    {file = "typing_extensions-4.7.1-py3-none-any.whl", hash = "sha256:440d5dd3af93b060174bf433bccd69b0babc3b15b1a8dca43789fd7f61514b36"},
-    {file = "typing_extensions-4.7.1.tar.gz", hash = "sha256:b75ddc264f0ba5615db7ba217daeb99701ad295353c45f9e95963337ceeeffb2"},
+    {file = "typing_extensions-4.9.0-py3-none-any.whl", hash = "sha256:af72aea155e91adfc61c3ae9e0e342dbc0cba726d6cba4b6c72c1f34e47291cd"},
+    {file = "typing_extensions-4.9.0.tar.gz", hash = "sha256:23478f88c37f27d76ac8aee6c905017a143b0b1b886c3c9f66bc2fd94f9f5783"},
 ]
 
 [[package]]
 name = "urllib3"
-version = "2.0.4"
-requires_python = ">=3.7"
+version = "2.2.1"
+requires_python = ">=3.8"
 summary = "HTTP library with thread-safe connection pooling, file post, and more."
 files = [
-    {file = "urllib3-2.0.4-py3-none-any.whl", hash = "sha256:de7df1803967d2c2a98e4b11bb7d6bd9210474c46e8a0401514e3a42a75ebde4"},
-    {file = "urllib3-2.0.4.tar.gz", hash = "sha256:8d22f86aae8ef5e410d4f539fde9ce6b2113a001bb4d189e0aed70642d602b11"},
+    {file = "urllib3-2.2.1-py3-none-any.whl", hash = "sha256:450b20ec296a467077128bff42b73080516e71b56ff59a60a02bef2232c4fa9d"},
+    {file = "urllib3-2.2.1.tar.gz", hash = "sha256:d0570876c61ab9e520d776c38acbbb5b05a776d3f9ff98a5c8fd5162a444cf19"},
 ]
 
 [[package]]
 name = "uvicorn"
-version = "0.23.2"
+version = "0.27.1"
 requires_python = ">=3.8"
 summary = "The lightning-fast ASGI server."
 dependencies = [
@@ -882,21 +914,21 @@ dependencies = [
     "h11>=0.8",
 ]
 files = [
-    {file = "uvicorn-0.23.2-py3-none-any.whl", hash = "sha256:1f9be6558f01239d4fdf22ef8126c39cb1ad0addf76c40e760549d2c2f43ab53"},
-    {file = "uvicorn-0.23.2.tar.gz", hash = "sha256:4d3cc12d7727ba72b64d12d3cc7743124074c0a69f7b201512fc50c3e3f1569a"},
+    {file = "uvicorn-0.27.1-py3-none-any.whl", hash = "sha256:5c89da2f3895767472a35556e539fd59f7edbe9b1e9c0e1c99eebeadc61838e4"},
+    {file = "uvicorn-0.27.1.tar.gz", hash = "sha256:3d9a267296243532db80c83a959a3400502165ade2c1338dea4e67915fd4745a"},
 ]
 
 [[package]]
 name = "werkzeug"
-version = "2.3.6"
+version = "3.0.1"
 requires_python = ">=3.8"
 summary = "The comprehensive WSGI web application library."
 dependencies = [
     "MarkupSafe>=2.1.1",
 ]
 files = [
-    {file = "Werkzeug-2.3.6-py3-none-any.whl", hash = "sha256:935539fa1413afbb9195b24880778422ed620c0fc09670945185cce4d91a8890"},
-    {file = "Werkzeug-2.3.6.tar.gz", hash = "sha256:98c774df2f91b05550078891dee5f0eb0cb797a522c757a2452b9cee5b202330"},
+    {file = "werkzeug-3.0.1-py3-none-any.whl", hash = "sha256:90a285dc0e42ad56b34e696398b8122ee4c681833fb35b8334a095d82c56da10"},
+    {file = "werkzeug-3.0.1.tar.gz", hash = "sha256:507e811ecea72b18a404947aded4b3390e1db8f826b494d76550ef45bb3b1dcc"},
 ]
 
 [[package]]
diff --git a/pyproject.toml b/pyproject.toml
index aa037ad..5e2945d 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -4,12 +4,12 @@ dynamic = ['version']
 description = "FastAPI for CLAMS utilities"
 authors = [{ name = "WGBH-MLA", email = "ryan_harbert@wgbh.org" }]
 dependencies = [
-    "clams-python~=1.0",
-    "mmif-python~=1.0",
-    "pydantic~=1.10",
-    "fastapi~=0.100",
-    "loguru~=0.7",
-    "rich~=13.5",
+    "clams-python>=1.1.2",
+    "mmif-python>=1.0.9",
+    "pydantic>=1.10.14",
+    "fastapi>=0.109.2",
+    "loguru>=0.7.2",
+    "rich>=13.7.0",
 ]
 requires-python = ">=3.11"
 readme = "README.md"
@@ -27,12 +27,12 @@ version = { source = 'file', path = 'fastclam/_version.py' }
 
 [tool.pdm.dev-dependencies]
 dev = [
-    "uvicorn~=0.23",
-    "black~=23.7",
-    "ruff~=0.0",
+    "uvicorn>=0.27.1",
+    "black>=24.2.0",
+    "ruff>=0.2.2",
 ]
 test = [
-    "pytest~=7.4",
-    "pytest-cov~=4.1",
-    "httpx~=0.24",
+    "pytest>=8.0.1",
+    "pytest-cov>=4.1.0",
+    "httpx>=0.27.0",
 ]