{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":667559682,"defaultBranch":"main","name":"WASITAMATchISAW","ownerLogin":"TravisWheelerLab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-07-17T19:36:51.000Z","ownerAvatar":"https://github.com/avatars/u/19337416?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1689622949.0","currentOid":""},"activityList":{"items":[{"before":"827fa33bc5f202e9934aa94a018003e01a5587ac","after":"e8baedef240a72f9081a27ad40e308b1b79be5ba","ref":"refs/heads/main","pushedAt":"2024-01-05T18:23:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"georgeglidden","name":"george","path":"/georgeglidden","primaryAvatarUrl":"https://github.com/avatars/u/47768122?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"9f1fa3a46b48982dd219ea7708799b25c034193e","after":"827fa33bc5f202e9934aa94a018003e01a5587ac","ref":"refs/heads/main","pushedAt":"2024-01-05T18:13:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"georgeglidden","name":"george","path":"/georgeglidden","primaryAvatarUrl":"https://github.com/avatars/u/47768122?s=80&v=4"},"commit":{"message":"a typo","shortMessageHtmlLink":"a typo"}},{"before":"f98263aa5b4c737e39adedf344e2778d34ae8304","after":"9f1fa3a46b48982dd219ea7708799b25c034193e","ref":"refs/heads/main","pushedAt":"2024-01-05T18:13:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"georgeglidden","name":"george","path":"/georgeglidden","primaryAvatarUrl":"https://github.com/avatars/u/47768122?s=80&v=4"},"commit":{"message":"Create README.md","shortMessageHtmlLink":"Create README.md"}},{"before":"5a41a85be3da8fbd2fbcf2effd0358de647f5211","after":"f98263aa5b4c737e39adedf344e2778d34ae8304","ref":"refs/heads/main","pushedAt":"2024-01-05T18:00:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"georgeglidden","name":"george","path":"/georgeglidden","primaryAvatarUrl":"https://github.com/avatars/u/47768122?s=80&v=4"},"commit":{"message":"new notebooks for revisions","shortMessageHtmlLink":"new notebooks for revisions"}},{"before":"88aba51e6155ece2fb3690db31fb27d9f6ba7f06","after":"5a41a85be3da8fbd2fbcf2effd0358de647f5211","ref":"refs/heads/main","pushedAt":"2023-12-09T18:32:56.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"georgeglidden","name":"george","path":"/georgeglidden","primaryAvatarUrl":"https://github.com/avatars/u/47768122?s=80&v=4"},"commit":{"message":"cleaned up notebook, made plots prettier","shortMessageHtmlLink":"cleaned up notebook, made plots prettier"}},{"before":"7130cf62935c3f0cdd0fa2a589449f71c9b43a03","after":"88aba51e6155ece2fb3690db31fb27d9f6ba7f06","ref":"refs/heads/main","pushedAt":"2023-12-06T16:09:19.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"georgeglidden","name":"george","path":"/georgeglidden","primaryAvatarUrl":"https://github.com/avatars/u/47768122?s=80&v=4"},"commit":{"message":"reorganized Gumbel distribution analysis, added pdf/cdf calculations","shortMessageHtmlLink":"reorganized Gumbel distribution analysis, added pdf/cdf calculations"}},{"before":"9b2b35801d22faee1bf1a847b579f1e3afb25cc7","after":"7130cf62935c3f0cdd0fa2a589449f71c9b43a03","ref":"refs/heads/main","pushedAt":"2023-10-20T20:22:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"georgeglidden","name":"george","path":"/georgeglidden","primaryAvatarUrl":"https://github.com/avatars/u/47768122?s=80&v=4"},"commit":{"message":"cleanup notebook","shortMessageHtmlLink":"cleanup notebook"}},{"before":"ca85198bc29490b97b7ef8a2c7a96b3dc9941826","after":"9b2b35801d22faee1bf1a847b579f1e3afb25cc7","ref":"refs/heads/main","pushedAt":"2023-10-20T19:25:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"georgeglidden","name":"george","path":"/georgeglidden","primaryAvatarUrl":"https://github.com/avatars/u/47768122?s=80&v=4"},"commit":{"message":"revision: replicated LPS/LCS analysis of Swiss-Prot sequences on tryptic fragments and on DNA sequences; prettified all the plots, streamlined their generation scripts, and added full documentation; optimized alignment logic and provided BLAST alternatives using BioAlignments.jl; fixed a bunch of little bugs and clarified some weird decisions... etc.","shortMessageHtmlLink":"revision: replicated LPS/LCS analysis of Swiss-Prot sequences on tryp…"}},{"before":"d12c89d27b5fb490b15a0504cff5ac39ea37d5ad","after":"ca85198bc29490b97b7ef8a2c7a96b3dc9941826","ref":"refs/heads/main","pushedAt":"2023-10-19T00:54:54.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"georgeglidden","name":"george","path":"/georgeglidden","primaryAvatarUrl":"https://github.com/avatars/u/47768122?s=80&v=4"},"commit":{"message":"Merge branch 'main' of https://github.com/TravisWheelerLab/WASITAMATchISAW","shortMessageHtmlLink":"Merge branch 'main' of https://github.com/TravisWheelerLab/WASITAMATc…"}},{"before":"c7f966d76c550bc206dc2da37d6d3cfc60798e66","after":"d12c89d27b5fb490b15a0504cff5ac39ea37d5ad","ref":"refs/heads/main","pushedAt":"2023-10-17T19:27:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"georgeglidden","name":"george","path":"/georgeglidden","primaryAvatarUrl":"https://github.com/avatars/u/47768122?s=80&v=4"},"commit":{"message":"Delete PLOTS_py.ipynb\n\nvery old","shortMessageHtmlLink":"Delete PLOTS_py.ipynb"}},{"before":"31571a40a56ec5b678530994758c7d26047d115b","after":"c7f966d76c550bc206dc2da37d6d3cfc60798e66","ref":"refs/heads/main","pushedAt":"2023-10-17T19:27:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"georgeglidden","name":"george","path":"/georgeglidden","primaryAvatarUrl":"https://github.com/avatars/u/47768122?s=80&v=4"},"commit":{"message":"Delete README_jl.ipynb\n\nvery old","shortMessageHtmlLink":"Delete README_jl.ipynb"}},{"before":"4f07f40681196c218d8a57b82c09c9dc9901f7fe","after":"31571a40a56ec5b678530994758c7d26047d115b","ref":"refs/heads/main","pushedAt":"2023-10-17T19:26:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"georgeglidden","name":"george","path":"/georgeglidden","primaryAvatarUrl":"https://github.com/avatars/u/47768122?s=80&v=4"},"commit":{"message":"Delete fig7.jl\n\nvery old","shortMessageHtmlLink":"Delete fig7.jl"}},{"before":"55de93220d0b66d5a8c99a4c9a8ade9289c8e88b","after":"4f07f40681196c218d8a57b82c09c9dc9901f7fe","ref":"refs/heads/main","pushedAt":"2023-10-17T19:26:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"georgeglidden","name":"george","path":"/georgeglidden","primaryAvatarUrl":"https://github.com/avatars/u/47768122?s=80&v=4"},"commit":{"message":"Delete fig6.jl\n\nvery old","shortMessageHtmlLink":"Delete fig6.jl"}},{"before":"35d256877503ae07946b11e68fb9fcef7ae2dd2c","after":"55de93220d0b66d5a8c99a4c9a8ade9289c8e88b","ref":"refs/heads/main","pushedAt":"2023-10-17T19:24:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"georgeglidden","name":"george","path":"/georgeglidden","primaryAvatarUrl":"https://github.com/avatars/u/47768122?s=80&v=4"},"commit":{"message":"release","shortMessageHtmlLink":"release"}},{"before":"5e1a5633f58bd252285b3ad8acb516ecd5856c11","after":"35d256877503ae07946b11e68fb9fcef7ae2dd2c","ref":"refs/heads/main","pushedAt":"2023-10-17T06:44:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"georgeglidden","name":"george","path":"/georgeglidden","primaryAvatarUrl":"https://github.com/avatars/u/47768122?s=80&v=4"},"commit":{"message":"reworked in silico trypsin digest","shortMessageHtmlLink":"reworked in silico trypsin digest"}},{"before":"8d4ee51a147dabc993b8d0e5e4e3a6dd79b9e2e3","after":"5e1a5633f58bd252285b3ad8acb516ecd5856c11","ref":"refs/heads/main","pushedAt":"2023-10-17T06:43:45.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"georgeglidden","name":"george","path":"/georgeglidden","primaryAvatarUrl":"https://github.com/avatars/u/47768122?s=80&v=4"},"commit":{"message":"finalized LPSLCS plots","shortMessageHtmlLink":"finalized LPSLCS plots"}},{"before":"1c0b0d8a50b3340007ea317006efe9a502c32db7","after":"8d4ee51a147dabc993b8d0e5e4e3a6dd79b9e2e3","ref":"refs/heads/main","pushedAt":"2023-10-13T01:12:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"georgeglidden","name":"george","path":"/georgeglidden","primaryAvatarUrl":"https://github.com/avatars/u/47768122?s=80&v=4"},"commit":{"message":"implemented intron and intergenic region sampling in FIG6 notebook + utils.jl to finalize chr22 data generation","shortMessageHtmlLink":"implemented intron and intergenic region sampling in FIG6 notebook + …"}},{"before":"db7ec1d3c3e5aa39666fda3a5ca469691e141709","after":"1c0b0d8a50b3340007ea317006efe9a502c32db7","ref":"refs/heads/main","pushedAt":"2023-10-10T23:47:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"georgeglidden","name":"george","path":"/georgeglidden","primaryAvatarUrl":"https://github.com/avatars/u/47768122?s=80&v=4"},"commit":{"message":"wrote docs, parsing scripts for GffRead step. scaffolded around the (todo) sampling code","shortMessageHtmlLink":"wrote docs, parsing scripts for GffRead step. scaffolded around the (…"}},{"before":"32064b101aefeb21916753479c2ba2cf3360600a","after":"db7ec1d3c3e5aa39666fda3a5ca469691e141709","ref":"refs/heads/main","pushedAt":"2023-10-05T22:10:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"georgeglidden","name":"george","path":"/georgeglidden","primaryAvatarUrl":"https://github.com/avatars/u/47768122?s=80&v=4"},"commit":{"message":"rebuilt chromosome.jl (and associated functions in io.jl) to use UCSC Gene Browser's data for genome and annotation formats rather than NCBI Nucleotide and NCBI Gene; this change supports a more nuanced handling of exons (protein-coding and rna), introns, and intergenic regions, and should address issues with excessive dynamic range in the final LPS/LCS data for chromosome 22.","shortMessageHtmlLink":"rebuilt chromosome.jl (and associated functions in io.jl) to use UCSC…"}},{"before":"019084dcf371b35ff31b65412634c310bed0feed","after":"32064b101aefeb21916753479c2ba2cf3360600a","ref":"refs/heads/main","pushedAt":"2023-10-04T01:18:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"georgeglidden","name":"george","path":"/georgeglidden","primaryAvatarUrl":"https://github.com/avatars/u/47768122?s=80&v=4"},"commit":{"message":"final final commit","shortMessageHtmlLink":"final final commit"}},{"before":"7cdbd6f0acd03f1e8c304329efac679eeda3bc97","after":"019084dcf371b35ff31b65412634c310bed0feed","ref":"refs/heads/main","pushedAt":"2023-10-04T00:59:26.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"georgeglidden","name":"george","path":"/georgeglidden","primaryAvatarUrl":"https://github.com/avatars/u/47768122?s=80&v=4"},"commit":{"message":"final commit","shortMessageHtmlLink":"final commit"}},{"before":"a27e50ccde159f08a8fabf3b9c3cf567322b669b","after":"7cdbd6f0acd03f1e8c304329efac679eeda3bc97","ref":"refs/heads/main","pushedAt":"2023-10-02T22:09:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"georgeglidden","name":"george","path":"/georgeglidden","primaryAvatarUrl":"https://github.com/avatars/u/47768122?s=80&v=4"},"commit":{"message":"finalized figure generation script for LCS/LPS plots","shortMessageHtmlLink":"finalized figure generation script for LCS/LPS plots"}},{"before":"400d0a06e722279a11e29ddaf581435a72d299c5","after":"a27e50ccde159f08a8fabf3b9c3cf567322b669b","ref":"refs/heads/main","pushedAt":"2023-10-02T21:09:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"georgeglidden","name":"george","path":"/georgeglidden","primaryAvatarUrl":"https://github.com/avatars/u/47768122?s=80&v=4"},"commit":{"message":"initial SwissProt LCS/LPS figure patch: Plots.jl does weird things in Jupyter notebooks so the figure generation script has been rewritten in Python. this effectively changes the scripts for the Chromosome22 and Trypsin LCS/LPS figures since they're the same procedure.","shortMessageHtmlLink":"initial SwissProt LCS/LPS figure patch: Plots.jl does weird things in…"}},{"before":"9d6d7684a027e4f82213da3a3fbc49ca80728147","after":"400d0a06e722279a11e29ddaf581435a72d299c5","ref":"refs/heads/main","pushedAt":"2023-09-29T02:37:22.000Z","pushType":"push","commitsCount":10,"pusher":{"login":"georgeglidden","name":"george","path":"/georgeglidden","primaryAvatarUrl":"https://github.com/avatars/u/47768122?s=80&v=4"},"commit":{"message":"aggregating leftover changes i forgot to commit: completed pipeline prototype in README_jl.ipynb, isolate figure scripts 1-3 in separate notebooks. completed source code.","shortMessageHtmlLink":"aggregating leftover changes i forgot to commit: completed pipeline p…"}},{"before":"246811a181391c2555779f03631ee068a0c6aa44","after":"9d6d7684a027e4f82213da3a3fbc49ca80728147","ref":"refs/heads/main","pushedAt":"2023-08-03T00:14:23.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"georgeglidden","name":"george","path":"/georgeglidden","primaryAvatarUrl":"https://github.com/avatars/u/47768122?s=80&v=4"},"commit":{"message":"added the rest of the shell commands and most of the text.","shortMessageHtmlLink":"added the rest of the shell commands and most of the text."}},{"before":"30f4ce1ec55a57aaf2a2af019fd7899812bec3af","after":"246811a181391c2555779f03631ee068a0c6aa44","ref":"refs/heads/main","pushedAt":"2023-08-02T15:40:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"georgeglidden","name":"george","path":"/georgeglidden","primaryAvatarUrl":"https://github.com/avatars/u/47768122?s=80&v=4"},"commit":{"message":"refactored trypsin.jl, eliminated memory errors and increased performance 20x (SwissProt in 30 minutes to 90 seconds)","shortMessageHtmlLink":"refactored trypsin.jl, eliminated memory errors and increased perform…"}},{"before":"14497a9dfd2453e0ae07e155e1ec2ae06ec531c9","after":"30f4ce1ec55a57aaf2a2af019fd7899812bec3af","ref":"refs/heads/main","pushedAt":"2023-08-02T05:48:45.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"georgeglidden","name":"george","path":"/georgeglidden","primaryAvatarUrl":"https://github.com/avatars/u/47768122?s=80&v=4"},"commit":{"message":"implemented a semigroup for constructing notation, tweaked fi6 colors","shortMessageHtmlLink":"implemented a semigroup for constructing notation, tweaked fi6 colors"}},{"before":"35ee8ba1cd59fab0d98e4f8b454f1a6613308410","after":"14497a9dfd2453e0ae07e155e1ec2ae06ec531c9","ref":"refs/heads/main","pushedAt":"2023-07-31T21:15:03.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"georgeglidden","name":"george","path":"/georgeglidden","primaryAvatarUrl":"https://github.com/avatars/u/47768122?s=80&v=4"},"commit":{"message":"figure 7 pipeline; tweaked plot colors and pen sizes; implemented masking","shortMessageHtmlLink":"figure 7 pipeline; tweaked plot colors and pen sizes; implemented mas…"}},{"before":"3a53be649490da82b831f5f9d4b1b2edb8667437","after":"35ee8ba1cd59fab0d98e4f8b454f1a6613308410","ref":"refs/heads/main","pushedAt":"2023-07-31T15:58:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"georgeglidden","name":"george","path":"/georgeglidden","primaryAvatarUrl":"https://github.com/avatars/u/47768122?s=80&v=4"},"commit":{"message":"implemented tantan masking, reworked outline for remaining figures.","shortMessageHtmlLink":"implemented tantan masking, reworked outline for remaining figures."}},{"before":"286d8c33ccb276bd922bbcf19d1f85a3f52fc353","after":"3a53be649490da82b831f5f9d4b1b2edb8667437","ref":"refs/heads/main","pushedAt":"2023-07-31T15:23:10.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"georgeglidden","name":"george","path":"/georgeglidden","primaryAvatarUrl":"https://github.com/avatars/u/47768122?s=80&v=4"},"commit":{"message":"added assets, colors","shortMessageHtmlLink":"added assets, colors"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAD2M6BTgA","startCursor":null,"endCursor":null}},"title":"Activity · TravisWheelerLab/WASITAMATchISAW"}