diff --git a/.github/dependabot.yml b/.github/dependabot.yml new file mode 100644 index 0000000..a048195 --- /dev/null +++ b/.github/dependabot.yml @@ -0,0 +1,11 @@ +version: 2 +updates: + # - package-ecosystem: pip + # directory: "/" + # schedule: + # interval: daily + - package-ecosystem: "github-actions" + directory: "/" + schedule: + # Check for updates once a week + interval: "weekly" diff --git a/.github/workflows/nightly-build.yaml b/.github/workflows/nightly-build.yaml new file mode 100644 index 0000000..7af7877 --- /dev/null +++ b/.github/workflows/nightly-build.yaml @@ -0,0 +1,17 @@ +name: nightly-build + +on: + workflow_dispatch: + schedule: + - cron: "0 0 * * *" # Daily “At 00:00” + +jobs: + build: + if: ${{ github.repository_owner == 'ProjectPythia' }} + uses: ProjectPythia/cookbook-actions/.github/workflows/build-book.yaml@main + with: + environment_name: cookbook-dev + + link-check: + if: ${{ github.repository_owner == 'ProjectPythia' }} + uses: ProjectPythia/cookbook-actions/.github/workflows/link-checker.yaml@main diff --git a/.github/workflows/publish-book.yaml b/.github/workflows/publish-book.yaml new file mode 100644 index 0000000..cc1d1a4 --- /dev/null +++ b/.github/workflows/publish-book.yaml @@ -0,0 +1,18 @@ +name: publish-book + +on: + # Trigger the workflow on push to main branch + push: + branches: + - main + workflow_dispatch: + +jobs: + build: + uses: ProjectPythia/cookbook-actions/.github/workflows/build-book.yaml@main + with: + environment_name: cookbook-dev + + deploy: + needs: build + uses: ProjectPythia/cookbook-actions/.github/workflows/deploy-book.yaml@main diff --git a/.github/workflows/trigger-book-build.yaml b/.github/workflows/trigger-book-build.yaml new file mode 100644 index 0000000..bd014bf --- /dev/null +++ b/.github/workflows/trigger-book-build.yaml @@ -0,0 +1,11 @@ +name: trigger-book-build +on: + pull_request: + +jobs: + build: + uses: ProjectPythia/cookbook-actions/.github/workflows/build-book.yaml@main + with: + environment_name: cookbook-dev + artifact_name: book-zip-${{ github.event.number }} + # Other input options are possible, see ProjectPythia/cookbook-actions/.github/workflows/build-book.yaml diff --git a/.github/workflows/trigger-delete-preview.yaml b/.github/workflows/trigger-delete-preview.yaml new file mode 100644 index 0000000..06e13e5 --- /dev/null +++ b/.github/workflows/trigger-delete-preview.yaml @@ -0,0 +1,9 @@ +name: trigger-delete-preview + +on: + pull_request_target: + types: closed + +jobs: + delete: + uses: ProjectPythia/cookbook-actions/.github/workflows/delete-preview.yaml@main diff --git a/.github/workflows/trigger-link-check.yaml b/.github/workflows/trigger-link-check.yaml new file mode 100644 index 0000000..e2402dd --- /dev/null +++ b/.github/workflows/trigger-link-check.yaml @@ -0,0 +1,7 @@ +name: trigger-link-check +on: + pull_request: + +jobs: + link-check: + uses: ProjectPythia/cookbook-actions/.github/workflows/link-checker.yaml@main diff --git a/.github/workflows/trigger-preview.yaml b/.github/workflows/trigger-preview.yaml new file mode 100644 index 0000000..049b5d0 --- /dev/null +++ b/.github/workflows/trigger-preview.yaml @@ -0,0 +1,27 @@ +name: trigger-preview +on: + workflow_run: + workflows: + - trigger-book-build + types: + - requested + - completed + +jobs: + find-pull-request: + uses: ProjectPythia/cookbook-actions/.github/workflows/find-pull-request.yaml@main + deploy-preview: + needs: find-pull-request + if: github.event.workflow_run.conclusion == 'success' + uses: ProjectPythia/cookbook-actions/.github/workflows/deploy-book.yaml@main + with: + artifact_name: book-zip-${{ needs.find-pull-request.outputs.number }} + destination_dir: _preview/${{ needs.find-pull-request.outputs.number }} # deploy to subdirectory labeled with PR number + is_preview: "true" + + preview-comment: + needs: find-pull-request + uses: ProjectPythia/cookbook-actions/.github/workflows/preview-comment.yaml@main + with: + pull_request_number: ${{ needs.find-pull-request.outputs.number }} + sha: ${{ needs.find-pull-request.outputs.sha }} diff --git a/.github/workflows/trigger-replace-links.yaml b/.github/workflows/trigger-replace-links.yaml new file mode 100644 index 0000000..4aa4b14 --- /dev/null +++ b/.github/workflows/trigger-replace-links.yaml @@ -0,0 +1,31 @@ +name: trigger-replace-links + +on: + workflow_dispatch: + +jobs: + build: + runs-on: ubuntu-latest + permissions: + contents: write + + steps: + - uses: actions/checkout@v4 + - name: Find and Replace Repository Name + uses: jacobtomlinson/gha-find-replace@v3 + with: + find: "ProjectPythia/cookbook-template" + replace: "${{ github.repository_owner }}/${{ github.event.repository.name }}" + regex: false + exclude: ".github/workflows/trigger-replace-links.yaml" + + - name: Find and Replace Repository ID + uses: jacobtomlinson/gha-find-replace@v3 + with: + find: "475509405" + replace: "${{ github.repository_id}}" + regex: false + exclude: ".github/workflows/trigger-replace-links.yml" + + - name: Push changes + uses: stefanzweifel/git-auto-commit-action@v5 diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..5a98549 --- /dev/null +++ b/.gitignore @@ -0,0 +1,136 @@ +# Default JupyterBook build output dir +_build/ + +# Byte-compiled / optimized / DLL files +__pycache__/ +*.py[cod] +*$py.class + +# C extensions +*.so + +# Distribution / packaging +.Python +build/ +notebooks/_build/ +develop-eggs/ +dist/ +downloads/ +eggs/ +.eggs/ +lib/ +lib64/ +parts/ +sdist/ +var/ +wheels/ +pip-wheel-metadata/ +share/python-wheels/ +*.egg-info/ +.installed.cfg +*.egg +MANIFEST + +# PyInstaller +# Usually these files are written by a python script from a template +# before PyInstaller builds the exe, so as to inject date/other infos into it. +*.manifest +*.spec + +# Installer logs +pip-log.txt +pip-delete-this-directory.txt + +# Unit test / coverage reports +htmlcov/ +.tox/ +.nox/ +.coverage +.coverage.* +.cache +nosetests.xml +coverage.xml +*.cover +*.py,cover +.hypothesis/ +.pytest_cache/ + +# Translations +*.mo +*.pot + +# Django stuff: +*.log +local_settings.py +db.sqlite3 +db.sqlite3-journal + +# Flask stuff: +instance/ +.webassets-cache + +# Scrapy stuff: +.scrapy + +# Sphinx documentation +docs/_build/ + +# PyBuilder +target/ + +# Jupyter Notebook +.ipynb_checkpoints + +# IPython +profile_default/ +ipython_config.py + +# pyenv +.python-version + +# pipenv +# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control. +# However, in case of collaboration, if having platform-specific dependencies or dependencies +# having no cross-platform support, pipenv may install dependencies that don't work, or not +# install all needed dependencies. +#Pipfile.lock + +# PEP 582; used by e.g. github.com/David-OConnor/pyflow +__pypackages__/ + +# Celery stuff +celerybeat-schedule +celerybeat.pid + +# SageMath parsed files +*.sage.py + +# Environments +.env +.venv +env/ +venv/ +ENV/ +env.bak/ +venv.bak/ + +# Spyder project settings +.spyderproject +.spyproject + +# Rope project settings +.ropeproject + +# mkdocs documentation +/site + +# mypy +.mypy_cache/ +.dmypy.json +dmypy.json + +# Pyre type checker +.pyre/ + +# Ephemeral .nfs files +.nfs* diff --git a/.isort.cfg b/.isort.cfg new file mode 100644 index 0000000..0fc010f --- /dev/null +++ b/.isort.cfg @@ -0,0 +1,2 @@ +[settings] +known_third_party = diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml new file mode 100644 index 0000000..e646345 --- /dev/null +++ b/.pre-commit-config.yaml @@ -0,0 +1,52 @@ +repos: + - repo: https://github.com/pre-commit/pre-commit-hooks + rev: v4.5.0 + hooks: + - id: trailing-whitespace + - id: end-of-file-fixer + - id: check-docstring-first + - id: check-json + - id: check-yaml + - id: double-quote-string-fixer + + - repo: https://github.com/psf/black + rev: 23.11.0 + hooks: + - id: black + + - repo: https://github.com/keewis/blackdoc + rev: v0.3.9 + hooks: + - id: blackdoc + + - repo: https://github.com/PyCQA/flake8 + rev: 6.1.0 + hooks: + - id: flake8 + + - repo: https://github.com/asottile/seed-isort-config + rev: v2.2.0 + hooks: + - id: seed-isort-config + + - repo: https://github.com/PyCQA/isort + rev: 5.12.0 + hooks: + - id: isort + + - repo: https://github.com/pre-commit/mirrors-prettier + rev: v3.1.0 + hooks: + - id: prettier + additional_dependencies: [prettier@v2.7.1] + + - repo: https://github.com/nbQA-dev/nbQA + rev: 1.7.0 + hooks: + - id: nbqa-black + additional_dependencies: [black] + - id: nbqa-pyupgrade + additional_dependencies: [pyupgrade] + exclude: foundations/quickstart.ipynb + - id: nbqa-isort + additional_dependencies: [isort] diff --git a/CITATION.cff b/CITATION.cff new file mode 100644 index 0000000..fe89c55 --- /dev/null +++ b/CITATION.cff @@ -0,0 +1,48 @@ +cff-version: 1.2.0 +message: "If you use this cookbook, please cite it as below." +authors: + # add additional entries for each author -- see https://github.com/citation-file-format/citation-file-format/blob/main/schema-guide.md + - family-names: Rose + given-names: Brian E. J. + orcid: https://orcid.org/0000-0002-9961-3821 # optional + website: https://github.com/brian-rose # optional + affiliation: University at Albany (State University of New York) # optional + - family-names: Kent + given-names: Julia + orcid: https://orcid.org/0000-0002-5611-8986 + website: https://github.com/jukent + affiliation: UCAR/NCAR + - family-names: Tyle + given-names: Kevin + orcid: https://orcid.org/0000-0001-5249-9665 + website: https://github.com/ktyle + affiliation: University at Albany (State University of New York) + - family-names: Clyne + given-names: John + orcid: https://orcid.org/0000-0003-2788-9017 + website: https://github.com/clyne + affiliation: UCAR/NCAR + - family-names: Camron + given-names: Drew + orcid: https://orcid.org/0000-0001-7246-6502 + website: https://github.com/dcamron + affiliation: UCAR/Unidata + - family-names: Grover + given-names: Maxwell + orcid: https://orcid.org/0000-0002-0370-8974 + website: https://github.com/mgrover1 + affiliation: Argonne National Laboratory + - family-names: Ford + given-names: Robert R. + orcid: https://orcid.org/0000-0001-5483-4965 + website: https://github.com/r-ford + affiliation: University at Albany (State University of New York) + - family-names: Paul + given-names: Kevin + orcid: https://orcid.org/0000-0001-8155-8038 + website: https://github.com/kmpaul + affiliation: NVIDIA + - name: "Cookbook Template contributors" # use the 'name' field to acknowledge organizations + website: "https://github.com/ProjectPythia/cookbook-template/graphs/contributors" +title: "Cookbook Template" +abstract: "A sample cookbook description." diff --git a/LICENSE b/LICENSE new file mode 100644 index 0000000..261eeb9 --- /dev/null +++ b/LICENSE @@ -0,0 +1,201 @@ + Apache License + Version 2.0, January 2004 + http://www.apache.org/licenses/ + + TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION + + 1. 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We also recommend that a + file or class name and description of purpose be included on the + same "printed page" as the copyright notice for easier + identification within third-party archives. + + Copyright [yyyy] [name of copyright owner] + + Licensed under the Apache License, Version 2.0 (the "License"); + you may not use this file except in compliance with the License. + You may obtain a copy of the License at + + http://www.apache.org/licenses/LICENSE-2.0 + + Unless required by applicable law or agreed to in writing, software + distributed under the License is distributed on an "AS IS" BASIS, + WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + See the License for the specific language governing permissions and + limitations under the License. diff --git a/README.md b/README.md new file mode 100644 index 0000000..25029ec --- /dev/null +++ b/README.md @@ -0,0 +1,83 @@ +thumbnail + +# (Replace_with_your_title) Cookbook + +[![nightly-build](https://github.com/ProjectPythia/cookbook-template/actions/workflows/nightly-build.yaml/badge.svg)](https://github.com/ProjectPythia/cookbook-template/actions/workflows/nightly-build.yaml) +[![Binder](https://binder.projectpythia.org/badge_logo.svg)](https://binder.projectpythia.org/v2/gh/ProjectPythia/cookbook-template/main?labpath=notebooks) +[![DOI](https://zenodo.org/badge/475509405.svg)](https://zenodo.org/badge/latestdoi/475509405) + +This Project Pythia Cookbook covers ... (replace `...` with the main subject of your cookbook ... e.g., _working with radar data in Python_) + +## Motivation + +(Add a few sentences stating why this cookbook will be useful. What skills will you, "the chef", gain once you have reached the end of the cookbook?) + +## Authors + +[First Author](@first-author), [Second Author](@second-author), etc. _Acknowledge primary content authors here_ + +### Contributors + + + + + +## Structure + +(State one or more sections that will comprise the notebook. E.g., _This cookbook is broken up into two main sections - "Foundations" and "Example Workflows."_ Then, describe each section below.) + +### Section 1 ( Replace with the title of this section, e.g. "Foundations" ) + +(Add content for this section, e.g., "The foundational content includes ... ") + +### Section 2 ( Replace with the title of this section, e.g. "Example workflows" ) + +(Add content for this section, e.g., "Example workflows include ... ") + +## Running the Notebooks + +You can either run the notebook using [Binder](https://binder.projectpythia.org/) or on your local machine. + +### Running on Binder + +The simplest way to interact with a Jupyter Notebook is through +[Binder](https://binder.projectpythia.org/), which enables the execution of a +[Jupyter Book](https://jupyterbook.org) in the cloud. The details of how this works are not +important for now. All you need to know is how to launch a Pythia +Cookbooks chapter via Binder. Simply navigate your mouse to +the top right corner of the book chapter you are viewing and click +on the rocket ship icon, (see figure below), and be sure to select +“launch Binder”. After a moment you should be presented with a +notebook that you can interact with. I.e. you’ll be able to execute +and even change the example programs. You’ll see that the code cells +have no output at first, until you execute them by pressing +{kbd}`Shift`\+{kbd}`Enter`. Complete details on how to interact with +a live Jupyter notebook are described in [Getting Started with +Jupyter](https://foundations.projectpythia.org/foundations/getting-started-jupyter.html). + +### Running on Your Own Machine + +If you are interested in running this material locally on your computer, you will need to follow this workflow: + +(Replace "cookbook-example" with the title of your cookbooks) + +1. Clone the `https://github.com/ProjectPythia/cookbook-example` repository: + + ```bash + git clone https://github.com/ProjectPythia/cookbook-example.git + ``` + +1. Move into the `cookbook-example` directory + ```bash + cd cookbook-example + ``` +1. Create and activate your conda environment from the `environment.yml` file + ```bash + conda env create -f environment.yml + conda activate cookbook-example + ``` +1. Move into the `notebooks` directory and start up Jupyterlab + ```bash + cd notebooks/ + jupyter lab + ``` diff --git a/_config.yml b/_config.yml new file mode 100644 index 0000000..b3c1065 --- /dev/null +++ b/_config.yml @@ -0,0 +1,72 @@ +# Book settings +# Learn more at https://jupyterbook.org/customize/config.html + +title: Project Pythia Cookbook Template +author: the Project Pythia Community +logo: notebooks/images/logos/pythia_logo-white-rtext.svg +copyright: "2023" + +execute: + # To execute notebooks via a Binder instead, replace 'cache' with 'binder' + execute_notebooks: cache + timeout: 600 + allow_errors: False # cells with expected failures must set the `raises-exception` cell tag + +# Add a few extensions to help with parsing content +parse: + myst_enable_extensions: # default extensions to enable in the myst parser. See https://myst-parser.readthedocs.io/en/latest/using/syntax-optional.html + - amsmath + - colon_fence + - deflist + - dollarmath + - html_admonition + - html_image + - replacements + - smartquotes + - substitution + +sphinx: + config: + linkcheck_ignore: ["https://doi.org/*", "https://zenodo.org/badge/*"] # don't run link checker on DOI links since they are immutable + nb_execution_raise_on_error: true # raise exception in build if there are notebook errors (this flag is ignored if building on binder) + html_favicon: notebooks/images/icons/favicon.ico + html_last_updated_fmt: "%-d %B %Y" + html_theme: sphinx_pythia_theme + html_permalinks_icon: '' + html_theme_options: + home_page_in_toc: true + repository_url: https://github.com/ProjectPythia/cookbook-template/ # Online location of your book + repository_branch: main # Which branch of the repository should be used when creating links (optional) + use_issues_button: true + use_repository_button: true + use_edit_page_button: true + google_analytics_id: G-T52X8HNYE8 + github_url: https://github.com/ProjectPythia + twitter_url: https://twitter.com/project_pythia + icon_links: + - name: YouTube + url: https://www.youtube.com/channel/UCoZPBqJal5uKpO8ZiwzavCw + icon: fab fa-youtube-square + type: fontawesome + launch_buttons: + binderhub_url: https://binder.projectpythia.org + notebook_interface: jupyterlab + extra_navbar: | + Theme by Project Pythia.

+ All code in Pythia Cookbooks is licensed under Apache 2.0. All other non-code content is licensed under Creative Commons BY 4.0 (CC BY 4.0).

+ logo_link: https://projectpythia.org + navbar_links: + - name: Home + url: https://projectpythia.org + - name: Foundations + url: https://foundations.projectpythia.org + - name: Cookbooks + url: https://cookbooks.projectpythia.org + - name: Resources + url: https://projectpythia.org/resource-gallery.html + - name: Community + url: https://projectpythia.org/index.html#join-us + footer_logos: + NCAR: notebooks/images/logos/NCAR-contemp-logo-blue.svg + Unidata: notebooks/images/logos/Unidata_logo_horizontal_1200x300.svg + UAlbany: notebooks/images/logos/UAlbany-A2-logo-purple-gold.svg diff --git a/_gallery_info.yml b/_gallery_info.yml new file mode 100644 index 0000000..8764ee4 --- /dev/null +++ b/_gallery_info.yml @@ -0,0 +1,6 @@ +thumbnail: thumbnail.png +tags: + domains: + - sampledomain + packages: + - samplepackage diff --git a/_toc.yml b/_toc.yml new file mode 100644 index 0000000..995f86b --- /dev/null +++ b/_toc.yml @@ -0,0 +1,9 @@ +format: jb-book +root: README +parts: + - caption: Preamble + chapters: + - file: notebooks/how-to-cite + - caption: Introduction + chapters: + - file: notebooks/notebook-template diff --git a/environment.yml b/environment.yml new file mode 100644 index 0000000..6fa3710 --- /dev/null +++ b/environment.yml @@ -0,0 +1,10 @@ +name: cookbook-dev +channels: + - conda-forge +dependencies: + - jupyter-book + - jupyterlab + - jupyter_server + - pip + - pip: + - sphinx-pythia-theme diff --git a/notebooks/how-to-cite.md b/notebooks/how-to-cite.md new file mode 100644 index 0000000..01390db --- /dev/null +++ b/notebooks/how-to-cite.md @@ -0,0 +1,7 @@ +# How to Cite This Cookbook + +The material in this Project Pythia Cookbook is licensed for free and open consumption and reuse. All code is served under [Apache 2.0](https://www.apache.org/licenses/LICENSE-2.0), while all non-code content is licensed under [Creative Commons BY 4.0 (CC BY 4.0)](https://creativecommons.org/licenses/by/4.0/). Effectively, this means you are free to share and adapt this material so long as you give appropriate credit to the Cookbook authors and the Project Pythia community. + +The source code for the book is [released on GitHub](https://github.com/ProjectPythia/cookbook-template) and archived on Zenodo. This DOI will always resolve to the latest release of the book source: + +[![DOI](https://zenodo.org/badge/475509405.svg)](https://zenodo.org/badge/latestdoi/475509405) diff --git a/notebooks/images/ProjectPythia_Logo_Final-01-Blue.svg b/notebooks/images/ProjectPythia_Logo_Final-01-Blue.svg new file mode 100644 index 0000000..961efc2 --- /dev/null +++ b/notebooks/images/ProjectPythia_Logo_Final-01-Blue.svg @@ -0,0 +1 @@ + diff --git a/notebooks/images/icons/favicon.ico b/notebooks/images/icons/favicon.ico new file mode 100644 index 0000000..da6ac73 Binary files /dev/null and b/notebooks/images/icons/favicon.ico differ diff --git a/notebooks/images/logos/NCAR-contemp-logo-blue.svg b/notebooks/images/logos/NCAR-contemp-logo-blue.svg new file mode 100644 index 0000000..3bcda63 --- /dev/null +++ b/notebooks/images/logos/NCAR-contemp-logo-blue.svg @@ -0,0 +1 @@ +NCAR-contemp-logo-blue.a diff --git a/notebooks/images/logos/UAlbany-A2-logo-purple-gold.svg b/notebooks/images/logos/UAlbany-A2-logo-purple-gold.svg new file mode 100644 index 0000000..4fdfe3a --- /dev/null +++ b/notebooks/images/logos/UAlbany-A2-logo-purple-gold.svg @@ -0,0 +1,1125 @@ + + + + + + image/svg+xml + + + + + + + + + + + diff --git a/notebooks/images/logos/Unidata_logo_horizontal_1200x300.svg b/notebooks/images/logos/Unidata_logo_horizontal_1200x300.svg new file mode 100644 index 0000000..0d9fd70 --- /dev/null +++ b/notebooks/images/logos/Unidata_logo_horizontal_1200x300.svg @@ -0,0 +1,891 @@ + + + + + + image/svg+xml + + + + + + + + + + diff --git a/notebooks/images/logos/pythia_logo-white-notext.svg b/notebooks/images/logos/pythia_logo-white-notext.svg new file mode 100644 index 0000000..73e2dfe --- /dev/null +++ b/notebooks/images/logos/pythia_logo-white-notext.svg @@ -0,0 +1,128 @@ + + + + + + image/svg+xml + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/notebooks/images/logos/pythia_logo-white-rtext.svg b/notebooks/images/logos/pythia_logo-white-rtext.svg new file mode 100644 index 0000000..fa2a5c6 --- /dev/null +++ b/notebooks/images/logos/pythia_logo-white-rtext.svg @@ -0,0 +1,225 @@ + + + + + + image/svg+xml + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/notebooks/notebook-template.ipynb b/notebooks/notebook-template.ipynb new file mode 100644 index 0000000..dad9f26 --- /dev/null +++ b/notebooks/notebook-template.ipynb @@ -0,0 +1,358 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Let's start here! If you can directly link to an image relevant to your notebook, such as [canonical logos](https://github.com/numpy/numpy/blob/main/doc/source/_static/numpylogo.svg), do so here at the top of your notebook. You can do this with Markdown syntax,\n", + "\n", + "> `![](http://link.com/to/image.png \"image alt text\")`\n", + "\n", + "or edit this cell to see raw HTML `img` demonstration. This is preferred if you need to shrink your embedded image. **Either way be sure to include `alt` text for any embedded images to make your content more accessible.**\n", + "\n", + "\"Project" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# Project Pythia Notebook Template\n", + "\n", + "Next, title your notebook appropriately with a top-level Markdown header, `#`. Do not use this level header anywhere else in the notebook. Our book build process will use this title in the navbar, table of contents, etc. Keep it short, keep it descriptive. Follow this with a `---` cell to visually distinguish the transition to the prerequisites section." + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "---" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Overview\n", + "If you have an introductory paragraph, lead with it here! Keep it short and tied to your material, then be sure to continue into the required list of topics below,\n", + "\n", + "1. This is a numbered list of the specific topics\n", + "1. These should map approximately to your main sections of content\n", + "1. Or each second-level, `##`, header in your notebook\n", + "1. Keep the size and scope of your notebook in check\n", + "1. And be sure to let the reader know up front the important concepts they'll be leaving with" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Prerequisites\n", + "This section was inspired by [this template](https://github.com/alan-turing-institute/the-turing-way/blob/master/book/templates/chapter-template/chapter-landing-page.md) of the wonderful [The Turing Way](https://the-turing-way.netlify.app) Jupyter Book.\n", + "\n", + "Following your overview, tell your reader what concepts, packages, or other background information they'll **need** before learning your material. Tie this explicitly with links to other pages here in Foundations or to relevant external resources. Remove this body text, then populate the Markdown table, denoted in this cell with `|` vertical brackets, below, and fill out the information following. In this table, lay out prerequisite concepts by explicitly linking to other Foundations material or external resources, or describe generally helpful concepts.\n", + "\n", + "Label the importance of each concept explicitly as **helpful/necessary**.\n", + "\n", + "| Concepts | Importance | Notes |\n", + "| --- | --- | --- |\n", + "| [Intro to Cartopy](https://foundations.projectpythia.org/core/cartopy/cartopy.html) | Necessary | |\n", + "| [Understanding of NetCDF](https://foundations.projectpythia.org/core/data-formats/netcdf-cf.html) | Helpful | Familiarity with metadata structure |\n", + "| Project management | Helpful | |\n", + "\n", + "- **Time to learn**: estimate in minutes. For a rough idea, use 5 mins per subsection, 10 if longer; add these up for a total. Safer to round up and overestimate.\n", + "- **System requirements**:\n", + " - Populate with any system, version, or non-Python software requirements if necessary\n", + " - Otherwise use the concepts table above and the Imports section below to describe required packages as necessary\n", + " - If no extra requirements, remove the **System requirements** point altogether" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "---" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Imports\n", + "Begin your body of content with another `---` divider before continuing into this section, then remove this body text and populate the following code cell with all necessary Python imports **up-front**:" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "import sys" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Your first content section" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "This is where you begin your first section of material, loosely tied to your objectives stated up front. Tie together your notebook as a narrative, with interspersed Markdown text, images, and more as necessary," + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# as well as any and all of your code cells\n", + "print(\"Hello world!\")" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "### A content subsection\n", + "Divide and conquer your objectives with Markdown subsections, which will populate the helpful navbar in Jupyter Lab and here on the Jupyter Book!" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# some subsection code\n", + "new = \"helpful information\"" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "### Another content subsection\n", + "Keep up the good work! A note, *try to avoid using code comments as narrative*, and instead let them only exist as brief clarifications where necessary." + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Your second content section\n", + "Here we can move on to our second objective, and we can demonstrate" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "### Subsection to the second section\n", + "\n", + "#### a quick demonstration\n", + "\n", + "##### of further and further\n", + "\n", + "###### header levels" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "as well $m = a * t / h$ text! Similarly, you have access to other $\\LaTeX$ equation [**functionality**](https://jupyter-notebook.readthedocs.io/en/stable/examples/Notebook/Typesetting%20Equations.html) via MathJax (demo below from link),\n", + "\n", + "\\begin{align}\n", + "\\dot{x} & = \\sigma(y-x) \\\\\n", + "\\dot{y} & = \\rho x - y - xz \\\\\n", + "\\dot{z} & = -\\beta z + xy\n", + "\\end{align}" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Check out [**any number of helpful Markdown resources**](https://www.markdownguide.org/basic-syntax/) for further customizing your notebooks and the [**Jupyter docs**](https://jupyter-notebook.readthedocs.io/en/stable/examples/Notebook/Working%20With%20Markdown%20Cells.html) for Jupyter-specific formatting information. Don't hesitate to ask questions if you have problems getting it to look *just right*." + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Last Section\n", + "\n", + "If you're comfortable, and as we briefly used for our embedded logo up top, you can embed raw html into Jupyter Markdown cells (edit to see):" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "
\n", + "

Info

\n", + " Your relevant information here!\n", + "
" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Feel free to copy this around and edit or play around with yourself. Some other `admonitions` you can put in:" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "
\n", + "

Success

\n", + " We got this done after all!\n", + "
" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "
\n", + "

Warning

\n", + " Be careful!\n", + "
" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "
\n", + "

Danger

\n", + " Scary stuff be here.\n", + "
" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "We also suggest checking out Jupyter Book's [brief demonstration](https://jupyterbook.org/content/metadata.html#jupyter-cell-tags) on adding cell tags to your cells in Jupyter Notebook, Lab, or manually. Using these cell tags can allow you to [customize](https://jupyterbook.org/interactive/hiding.html) how your code content is displayed and even [demonstrate errors](https://jupyterbook.org/content/execute.html#dealing-with-code-that-raises-errors) without altogether crashing our loyal army of machines!" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "---" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Summary\n", + "Add one final `---` marking the end of your body of content, and then conclude with a brief single paragraph summarizing at a high level the key pieces that were learned and how they tied to your objectives. Look to reiterate what the most important takeaways were.\n", + "\n", + "### What's next?\n", + "Let Jupyter book tie this to the next (sequential) piece of content that people could move on to down below and in the sidebar. However, if this page uniquely enables your reader to tackle other nonsequential concepts throughout this book, or even external content, link to it here!" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Resources and references\n", + "Finally, be rigorous in your citations and references as necessary. Give credit where credit is due. Also, feel free to link to relevant external material, further reading, documentation, etc. Then you're done! Give yourself a quick review, a high five, and send us a pull request. A few final notes:\n", + " - `Kernel > Restart Kernel and Run All Cells...` to confirm that your notebook will cleanly run from start to finish\n", + " - `Kernel > Restart Kernel and Clear All Outputs...` before committing your notebook, our machines will do the heavy lifting\n", + " - Take credit! Provide author contact information if you'd like; if so, consider adding information here at the bottom of your notebook\n", + " - Give credit! Attribute appropriate authorship for referenced code, information, images, etc.\n", + " - Only include what you're legally allowed: **no copyright infringement or plagiarism**\n", + " \n", + "Thank you for your contribution!" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3 (ipykernel)", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.10.8" + }, + "nbdime-conflicts": { + "local_diff": [ + { + "diff": [ + { + "diff": [ + { + "key": 0, + "op": "addrange", + "valuelist": [ + "Python 3" + ] + }, + { + "key": 0, + "length": 1, + "op": "removerange" + } + ], + "key": "display_name", + "op": "patch" + } + ], + "key": "kernelspec", + "op": "patch" + } + ], + "remote_diff": [ + { + "diff": [ + { + "diff": [ + { + "key": 0, + "op": "addrange", + "valuelist": [ + "Python3" + ] + }, + { + "key": 0, + "length": 1, + "op": "removerange" + } + ], + "key": "display_name", + "op": "patch" + } + ], + "key": "kernelspec", + "op": "patch" + } + ] + }, + "toc-autonumbering": false + }, + "nbformat": 4, + "nbformat_minor": 4 +} diff --git a/thumbnail.png b/thumbnail.png new file mode 100644 index 0000000..8d49fc2 Binary files /dev/null and b/thumbnail.png differ diff --git a/thumbnail.svg b/thumbnail.svg new file mode 100644 index 0000000..c8d0ab1 --- /dev/null +++ b/thumbnail.svg @@ -0,0 +1 @@ +