From d65d9b724d9a43e81cc6694000e111dfb02800da Mon Sep 17 00:00:00 2001 From: OskarGauffin <7349924+OskarGauffin@users.noreply.github.com> Date: Thu, 18 Jan 2024 19:46:14 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20OskarGau?= =?UTF-8?q?ffin/pvda@4f05b74ce02316578d2c322aa12dd0844ca44970=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- 404.html | 9 ++++++++- LICENSE.html | 10 ++++++++-- apple-touch-icon-120x120.png | Bin 21167 -> 21167 bytes apple-touch-icon-152x152.png | Bin 30062 -> 30062 bytes apple-touch-icon-180x180.png | Bin 38269 -> 38269 bytes apple-touch-icon-60x60.png | Bin 7189 -> 7189 bytes apple-touch-icon-76x76.png | Bin 10428 -> 10428 bytes apple-touch-icon.png | Bin 38269 -> 38269 bytes articles/Disproportionality_analysis.html | 11 +++++++++-- articles/index.html | 8 +++++++- authors.html | 10 ++++++++-- favicon-16x16.png | Bin 1286 -> 1286 bytes favicon-32x32.png | Bin 2730 -> 2730 bytes index.html | 13 +++++++++++-- news/index.html | 10 ++++++++-- pkgdown.yml | 2 +- reference/add_disproportionality.html | 10 ++++++++-- reference/add_expected_counts.html | 10 ++++++++-- reference/apply_rule_of_N.html | 10 ++++++++-- reference/build_colnames_da.html | 10 ++++++++-- reference/ci_for_ic.html | 10 ++++++++-- reference/ci_for_prr.html | 10 ++++++++-- reference/ci_for_ror.html | 10 ++++++++-- reference/conf_lvl_to_quantile_prob.html | 10 ++++++++-- reference/count_expected_prr.html | 10 ++++++++-- reference/count_expected_ror.html | 10 ++++++++-- reference/count_expected_rrr.html | 10 ++++++++-- reference/da.html | 10 ++++++++-- reference/drug_event_df.html | 10 ++++++++-- reference/grouped_da.html | 10 ++++++++-- reference/ic.html | 10 ++++++++-- reference/index.html | 8 +++++++- reference/print.da.html | 10 ++++++++-- reference/prr.html | 10 ++++++++-- reference/ror.html | 10 ++++++++-- .../round_and_sort_by_lower_da_limit.html | 10 ++++++++-- .../round_columns_with_many_decimals.html | 10 ++++++++-- reference/summary.da.html | 10 ++++++++-- reference/tiny_dataset.html | 10 ++++++++-- reference/write_to_excel.html | 10 ++++++++-- 40 files changed, 251 insertions(+), 60 deletions(-) diff --git a/404.html b/404.html index 9627f3b..d47744e 100644 --- a/404.html +++ b/404.html @@ -57,7 +57,14 @@ - + diff --git a/LICENSE.html b/LICENSE.html index 32efe34..6df3887 100644 --- a/LICENSE.html +++ b/LICENSE.html @@ -33,7 +33,13 @@ - + @@ -41,7 +47,7 @@

GNU General Public License

- + Source: LICENSE.md
diff --git a/apple-touch-icon-120x120.png b/apple-touch-icon-120x120.png index 5361ab17b5c9fcfe4bdd837074a54a18afa2dca8..8bb176990b2bf741325221f60f322564ef9bb14d 100644 GIT binary patch delta 59 zcmZ3#lyUu1#t9SIbannJt~CkWnl2KD0uPYb0td1Vl(t#%TNAa Gk`Dl>M-|Kf delta 59 zcmaF&it*hm#t9SI)Oo#^he>Umu2I5oY-wd^tZiUmWnl2pb?%4B=Sq~2#Tq13eJ1}e G$p-+NuoVaZ diff --git a/apple-touch-icon-180x180.png b/apple-touch-icon-180x180.png index a7ee842c58597a8127cf5f74bf60fac74dfab3d9..e050ab537ca3106f88ed2a302d27d8a1f76f6368 100644 GIT binary patch delta 59 zcmeynis|nvrU?_-boEm-{+Dc=Za#(I#MH{fT-(6F%D|xRty9uad delta 57 zcmbPgG1X$iL^gF!pHq{VH%>n<#cynBWnigoU|?lnFmwJPg~_GTO2}d_4pq&Wyi7VD E046sRHUIzs diff --git a/apple-touch-icon-76x76.png b/apple-touch-icon-76x76.png index b4cdebfba48bc79491a9e3c5a6f813cc6a1505f2..01e2ef721eb9a5894b09c24b883f9fe1e50063b4 100644 GIT binary patch delta 57 zcmdlJxF>MJL^fURWLN9ljnm82`Atl%OpLV+46F;^|2@^oz8d)e DCan_V delta 57 zcmdlJxF>MJL^gHqMMpmCZ=7DH&TnjKWoW2vU|?lnkanx*=42TSC1f%2c9Yb}z8d)e DS3(k{ diff --git a/apple-touch-icon.png b/apple-touch-icon.png index 7866a989828ab9084a69b31e69525de8a830f14d..0da02b725d14a615935362d8c7b2c07ce3731d44 100644 GIT binary patch delta 59 zcmeynis|nvrU?_-bPZlAd}`b{-FynaiK&%|g|>l#m4QLWQlsR_cc&;Ji~ao3b$>G7 G)O-NIsTR`! delta 59 zcmeynis|nvrU?_-)CDvaS{>dv-Fynav89!vnYMv}m4U(H+D+k;?@m!d7Q3Xt^?EYj G)O-M!xD@9A diff --git a/articles/Disproportionality_analysis.html b/articles/Disproportionality_analysis.html index 02e7e26..071b8bd 100644 --- a/articles/Disproportionality_analysis.html +++ b/articles/Disproportionality_analysis.html @@ -59,7 +59,14 @@ -
    +
    @@ -74,7 +81,7 @@

    Disproportionality analysis

    - + Source: vignettes/Disproportionality_analysis.Rmd
    Disproportionality_analysis.Rmd
    diff --git a/articles/index.html b/articles/index.html index 10f630a..4036833 100644 --- a/articles/index.html +++ b/articles/index.html @@ -33,7 +33,13 @@ - + diff --git a/authors.html b/authors.html index ecaf5f7..839868d 100644 --- a/authors.html +++ b/authors.html @@ -33,7 +33,13 @@ - + @@ -54,7 +60,7 @@

    Authors

    Citation

    -

    +

    Source: DESCRIPTION

    Gauffin O (2024). pvda: Disproportionality Functions for Pharmacovigilance. diff --git a/favicon-16x16.png b/favicon-16x16.png index 972f4442c6f35849ceaa273aaddb9f0575245b7d..2ed059d3d79a7890df89d93243d6fb6719f6a723 100644 GIT binary patch delta 59 zcmZqUYUA1<#muH_#^4;jWwQdaIU~P`sgojjc- F9{|Mh5c>cC delta 59 zcmZqUYUA1<#muHIcJR>rZ<`gE%^CTPEv<}vU|?lnP=9Kc@MJD7C1f$a=}PM-TXW?D E035s#9RL6T diff --git a/index.html b/index.html index c573e11..6a176a5 100644 --- a/index.html +++ b/index.html @@ -59,7 +59,14 @@ -

    +
    @@ -75,7 +82,7 @@

    An R package for executing disproportionality analyses in pharmacovigilance, using the information component (IC), proportional reporting rate (PRR) and reporting odds ratio (ROR).

    -

    R-CMD-check

    +

    R-CMD-check CRAN status

    Installation @@ -107,6 +114,8 @@

    Example code
  • View on CRAN
    • +
  • Browse source code
    • +
  • Report a bug

    • diff --git a/news/index.html b/news/index.html index 94afecf..cb8cf6a 100644 --- a/news/index.html +++ b/news/index.html @@ -33,7 +33,13 @@ - + @@ -41,7 +47,7 @@

    Changelog

    - + Source: NEWS.md
    diff --git a/pkgdown.yml b/pkgdown.yml index 1497a10..7a65769 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -3,7 +3,7 @@ pkgdown: 2.0.7 pkgdown_sha: ~ articles: Disproportionality_analysis: Disproportionality_analysis.html -last_built: 2024-01-18T19:39Z +last_built: 2024-01-18T19:46Z urls: reference: https://oskargauffin.github.io/pvutils/reference article: https://oskargauffin.github.io/pvutils/articles diff --git a/reference/add_disproportionality.html b/reference/add_disproportionality.html index 90b9803..a1c1a90 100644 --- a/reference/add_disproportionality.html +++ b/reference/add_disproportionality.html @@ -37,7 +37,13 @@ -
      +
      @@ -46,7 +52,7 @@

      Add disproportionality estimates to data frame with expected counts

      - + Source: R/higher_level_disprop_analysis.R
      add_disproportionality.Rd
      diff --git a/reference/add_expected_counts.html b/reference/add_expected_counts.html index e6bc440..838ed6a 100644 --- a/reference/add_expected_counts.html +++ b/reference/add_expected_counts.html @@ -33,7 +33,13 @@ - + @@ -41,7 +47,7 @@

      Produces expected counts

      - + Source: R/higher_level_disprop_analysis.R
      add_expected_counts.Rd
      diff --git a/reference/apply_rule_of_N.html b/reference/apply_rule_of_N.html index 2418a0b..80abb57 100644 --- a/reference/apply_rule_of_N.html +++ b/reference/apply_rule_of_N.html @@ -33,7 +33,13 @@ -
        + @@ -41,7 +47,7 @@

        apply_rule_of_N

        - + Source: R/lower_level_disprop_analysis.R
        apply_rule_of_N.Rd
        diff --git a/reference/build_colnames_da.html b/reference/build_colnames_da.html index 75bd5f5..6b2b1d9 100644 --- a/reference/build_colnames_da.html +++ b/reference/build_colnames_da.html @@ -35,7 +35,13 @@ -
          + @@ -43,7 +49,7 @@

          An internal function creating colnames for da confidence/credibility bounds

          - + Source: R/lower_level_disprop_analysis.R
          build_colnames_da.Rd
          diff --git a/reference/ci_for_ic.html b/reference/ci_for_ic.html index 1d79875..d5020e7 100644 --- a/reference/ci_for_ic.html +++ b/reference/ci_for_ic.html @@ -37,7 +37,13 @@ -
            + @@ -45,7 +51,7 @@

            Confidence intervals for Information Component (IC)

            - + Source: R/lower_level_disprop_analysis.R
            ci_for_ic.Rd
            diff --git a/reference/ci_for_prr.html b/reference/ci_for_prr.html index 2cf9a5c..d5165cb 100644 --- a/reference/ci_for_prr.html +++ b/reference/ci_for_prr.html @@ -37,7 +37,13 @@ -
              + @@ -45,7 +51,7 @@

              Confidence intervals for Proportional Reporting Rate

              - + Source: R/lower_level_disprop_analysis.R
              ci_for_prr.Rd
              diff --git a/reference/ci_for_ror.html b/reference/ci_for_ror.html index b704bed..a8af77b 100644 --- a/reference/ci_for_ror.html +++ b/reference/ci_for_ror.html @@ -37,7 +37,13 @@ -
                + @@ -45,7 +51,7 @@

                Confidence intervals for Reporting Odds Ratio

                - + Source: R/lower_level_disprop_analysis.R
                ci_for_ror.Rd
                diff --git a/reference/conf_lvl_to_quantile_prob.html b/reference/conf_lvl_to_quantile_prob.html index 4236435..cf8013c 100644 --- a/reference/conf_lvl_to_quantile_prob.html +++ b/reference/conf_lvl_to_quantile_prob.html @@ -35,7 +35,13 @@ -
                  + @@ -43,7 +49,7 @@

                  Quantile probabilities from confidence level

                  - + Source: R/lower_level_disprop_analysis.R
                  conf_lvl_to_quantile_prob.Rd
                  diff --git a/reference/count_expected_prr.html b/reference/count_expected_prr.html index f8e7caa..2f2a2a0 100644 --- a/reference/count_expected_prr.html +++ b/reference/count_expected_prr.html @@ -33,7 +33,13 @@ -
                    + @@ -41,7 +47,7 @@

                    Count expected for Proportional Reporting Rate

                    - + Source: R/lower_level_disprop_analysis.R
                    count_expected_prr.Rd
                    diff --git a/reference/count_expected_ror.html b/reference/count_expected_ror.html index bf4011d..e4c666c 100644 --- a/reference/count_expected_ror.html +++ b/reference/count_expected_ror.html @@ -33,7 +33,13 @@ -
                      + @@ -41,7 +47,7 @@

                      Count expected for Reporting Odds Ratio

                      - + Source: R/lower_level_disprop_analysis.R
                      count_expected_ror.Rd
                      diff --git a/reference/count_expected_rrr.html b/reference/count_expected_rrr.html index 67130fd..4a9335e 100644 --- a/reference/count_expected_rrr.html +++ b/reference/count_expected_rrr.html @@ -33,7 +33,13 @@ -
                        + @@ -41,7 +47,7 @@

                        Count Expected for Relative Reporting Rate

                        - + Source: R/lower_level_disprop_analysis.R
                        count_expected_rrr.Rd
                        diff --git a/reference/da.html b/reference/da.html index ad50893..5661ebb 100644 --- a/reference/da.html +++ b/reference/da.html @@ -43,7 +43,13 @@ -
                          + @@ -51,7 +57,7 @@

                          Disproportionality Analysis

                          - + Source: R/da_object_oriented_functions.R
                          da.Rd
                          diff --git a/reference/drug_event_df.html b/reference/drug_event_df.html index 1047f07..76cc74c 100644 --- a/reference/drug_event_df.html +++ b/reference/drug_event_df.html @@ -35,7 +35,13 @@ -
                            + @@ -43,7 +49,7 @@

                            A simulated ICSR database

                            - + Source: R/drug_event_df.R
                            drug_event_df.Rd
                            diff --git a/reference/grouped_da.html b/reference/grouped_da.html index 8b4d28e..a4b56e6 100644 --- a/reference/grouped_da.html +++ b/reference/grouped_da.html @@ -33,7 +33,13 @@ -
                              + @@ -41,7 +47,7 @@

                              Disproportionality Analysis by Subgroups

                              - + Source: R/higher_level_disprop_analysis.R
                              grouped_da.Rd
                              diff --git a/reference/ic.html b/reference/ic.html index 2b682ce..ac26bdc 100644 --- a/reference/ic.html +++ b/reference/ic.html @@ -35,7 +35,13 @@ -
                                + @@ -43,7 +49,7 @@

                                Information component

                                - + Source: R/lower_level_disprop_analysis.R
                                ic.Rd
                                diff --git a/reference/index.html b/reference/index.html index 94d35d4..36cd39e 100644 --- a/reference/index.html +++ b/reference/index.html @@ -33,7 +33,13 @@ -
                                  + diff --git a/reference/print.da.html b/reference/print.da.html index 8e6304f..d43ff60 100644 --- a/reference/print.da.html +++ b/reference/print.da.html @@ -33,7 +33,13 @@ - + @@ -41,7 +47,7 @@

                                  print function for da objects

                                  - + Source: R/da_object_oriented_functions.R
                                  print.da.Rd
                                  diff --git a/reference/prr.html b/reference/prr.html index bdf2872..237224c 100644 --- a/reference/prr.html +++ b/reference/prr.html @@ -35,7 +35,13 @@ -
                                    + @@ -43,7 +49,7 @@

                                    Proportional Reporting Rate

                                    - + Source: R/lower_level_disprop_analysis.R
                                    prr.Rd
                                    diff --git a/reference/ror.html b/reference/ror.html index aa174c8..45ab430 100644 --- a/reference/ror.html +++ b/reference/ror.html @@ -35,7 +35,13 @@ -
                                      + @@ -43,7 +49,7 @@

                                      Reporting Odds Ratio

                                      - + Source: R/lower_level_disprop_analysis.R
                                      ror.Rd
                                      diff --git a/reference/round_and_sort_by_lower_da_limit.html b/reference/round_and_sort_by_lower_da_limit.html index 9db6755..10e4d09 100644 --- a/reference/round_and_sort_by_lower_da_limit.html +++ b/reference/round_and_sort_by_lower_da_limit.html @@ -33,7 +33,13 @@ -
                                        + @@ -41,7 +47,7 @@

                                        Sort a disproportionality analysis by the lower da conf. or cred. limit

                                        - + Source: R/lower_level_disprop_analysis.R
                                        round_and_sort_by_lower_da_limit.Rd
                                        diff --git a/reference/round_columns_with_many_decimals.html b/reference/round_columns_with_many_decimals.html index 46156a5..21cfe07 100644 --- a/reference/round_columns_with_many_decimals.html +++ b/reference/round_columns_with_many_decimals.html @@ -33,7 +33,13 @@ -
                                          + @@ -41,7 +47,7 @@

                                          Rounds columns in da_df with many decimals

                                          - + Source: R/lower_level_disprop_analysis.R
                                          round_columns_with_many_decimals.Rd
                                          diff --git a/reference/summary.da.html b/reference/summary.da.html index e59a211..2713848 100644 --- a/reference/summary.da.html +++ b/reference/summary.da.html @@ -33,7 +33,13 @@ -
                                            + @@ -41,7 +47,7 @@

                                            Summary function for disproportionality objects

                                            - + Source: R/da_object_oriented_functions.R
                                            summary.da.Rd
                                            diff --git a/reference/tiny_dataset.html b/reference/tiny_dataset.html index 3aa43d1..7408ea8 100644 --- a/reference/tiny_dataset.html +++ b/reference/tiny_dataset.html @@ -37,7 +37,13 @@ -
                                              + @@ -45,7 +51,7 @@

                                              A 110 reports big, simulated ICSR database

                                              - + Source: R/tiny_dataset.R
                                              tiny_dataset.Rd
                                              diff --git a/reference/write_to_excel.html b/reference/write_to_excel.html index 2809bb8..563ecde 100644 --- a/reference/write_to_excel.html +++ b/reference/write_to_excel.html @@ -33,7 +33,13 @@ -
                                                + @@ -41,7 +47,7 @@

                                                Write to excel

                                                - + Source: R/write_to_excel.R
                                                write_to_excel.Rd