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Added the option, controlled by the new TRANSMUTE_ICE runtime parameter, to transform ice and snow directly into seawater with a spatially variable rate, read from the file specified by TRANSMUTATION_RATE_FILE, as a form of simple outflow boundary condition on the sea ice. This commit includes the addition of two new allocatable arrays in the ice_ocean_flux_type to facilitate monitoring of pseudo-conservation of heat and salt (bearing in mind that the transmutation itself causes non-conservation of heat and salt). There is also a new optional argument to alloc_ice_ocean_flux. Also replaced calls to mpp_clock with calls to cpu_clock from the MOM_cpu_clock module, and replaced calls to file_exist from FMS_io_mod with calls to file_exists from MOM_io, both in the modules that are already being modified for this commit. All answers in the MOM6-examples test suite are bitwise identical, but there are new entries in the SIS_parameter_doc files, and there are two new elements in a public type and a new optional argument in a public subroutine interface.
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