WARNING: Tensor flow backened message when running deepbgc info into the CLI

[zagonzalez]

Hi,

I currently have deepbgc installed onto a conda environment. The program works but when I run it, I am getting a warning message that looks like the following:

`Using TensorFlow backend.
WARNING 04/10 11:54:59 From /EFS/tools/miniconda/envs/deepbgc2/lib/python3.7/site-packages/keras/backend/tensorflow_backend.py:74: The name tf.get_default_graph is deprecated. Please use tf.compat.v1.get_default_graph instead.

WARNING 04/10 11:54:59 From /EFS/tools/miniconda/envs/deepbgc2/lib/python3.7/site-packages/keras/backend/tensorflow_backend.py:517: The name tf.placeholder is deprecated. Please use tf.compat.v1.placeholder instead.

WARNING 04/10 11:54:59 From /EFS/tools/miniconda/envs/deepbgc2/lib/python3.7/site-packages/keras/backend/tensorflow_backend.py:4138: The name tf.random_uniform is deprecated. Please use tf.random.uniform instead.

WARNING 04/10 11:54:59 From /EFS/tools/miniconda/envs/deepbgc2/lib/python3.7/site-packages/keras/backend/tensorflow_backend.py:133: The name tf.placeholder_with_default is deprecated. Please use tf.compat.v1.placeholder_with_default instead.

WARNING 04/10 11:54:59 From /EFS/tools/miniconda/envs/deepbgc2/lib/python3.7/site-packages/keras/backend/tensorflow_backend.py:3445: calling dropout (from tensorflow.python.ops.nn_ops) with keep_prob is deprecated and will be removed in a future version.
Instructions for updating:
Please use rate instead of keep_prob. Rate should be set to rate = 1 - keep_prob.
WARNING 04/10 11:55:00 From /EFS/tools/miniconda/envs/deepbgc2/lib/python3.7/site-packages/keras/backend/tensorflow_backend.py:174: The name tf.get_default_session is deprecated. Please use tf.compat.v1.get_default_session instead.

WARNING 04/10 11:55:00 From /EFS/tools/miniconda/envs/deepbgc2/lib/python3.7/site-packages/keras/backend/tensorflow_backend.py:181: The name tf.ConfigProto is deprecated. Please use tf.compat.v1.ConfigProto instead.

WARNING 04/10 11:55:00 From /EFS/tools/miniconda/envs/deepbgc2/lib/python3.7/site-packages/keras/backend/tensorflow_backend.py:186: The name tf.Session is deprecated. Please use tf.compat.v1.Session instead.

WARNING 04/10 11:55:00 From /EFS/tools/miniconda/envs/deepbgc2/lib/python3.7/site-packages/keras/backend/tensorflow_backend.py:190: The name tf.global_variables is deprecated. Please use tf.compat.v1.global_variables instead.

WARNING 04/10 11:55:00 From /EFS/tools/miniconda/envs/deepbgc2/lib/python3.7/site-packages/keras/backend/tensorflow_backend.py:199: The name tf.is_variable_initialized is deprecated. Please use tf.compat.v1.is_variable_initialized instead.

WARNING 04/10 11:55:00 From /EFS/tools/miniconda/envs/deepbgc2/lib/python3.7/site-packages/keras/backend/tensorflow_backend.py:206: The name tf.variables_initializer is deprecated. Please use tf.compat.v1.variables_initializer instead.`

Any way to deal with these message flags? I currently have version 1.15.4 of the tensorflow package installed onto the environment and version 0.1.30 of deepbgc installed

[prihoda]

Hi @zagonzalez these warnings are due to the fact that we are dependent on an old version of Tensorflow. We are not planning to upgrade since it would take a significant amount of effort, but it should actually not cause any issues.