README.md

PointFISH

This repository gathers the code used for the following paper published in ECCV 2022 BioImage Computing workshop:

Title: PointFISH: learning point cloud representations for RNA localization patterns

Authors: Arthur Imbert^1,2,3*, Florian Mueller^{4, 5}, Thomas Walter^1,2,3*

¹Centre for Computational Biology, Mines Paris, PSL University, Paris, France
²Institut Curie, PSL University, Paris, France
³INSERM, U900, Paris, France
⁴Imaging and Modeling Unit, Institut Pasteur and UMR 3691 CNRS, Paris, France
⁵C3BI, USR 3756 IP CNRS, Paris, France

^*To whom correspondence should be addressed.

Pipeline

Below, we list the different steps performed in the paper:

1. simulate_patterns.py
2. build_tfrecords_clf.py
3. train_clf.py