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ExtractGranulesWithLongFile.py
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ExtractGranulesWithLongFile.py
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import sys,os,time,glob,shutil,re,multiprocessing, errno
from distutils.dir_util import copy_tree
#with open('/media/fklingenberg/Expansion Drive/HentGranules/GranuleListe.csv', 'rb') as f:
# reader = csv.reader(f)
# your_list = list(reader)
#print your_list
#your_list2 = map(str,your_list)
#print your_list2
#your_list3 = []
#for i in your_list2:
# your_list3.append(i.replace('['
# Read list with Granules which should be used
GranuleList = open('/media/fklingenberg/Expansion Drive/HentGranules/GranuleListe.csv').read().splitlines()
#print GranuleList
#Path where your list of granules will be saved
newpath = '/media/fklingenberg/Expansion Drive/HentGranules/NewData/'
# Initalize list of granules with full path
granuleFilepathstring = ''
# Create single granule folders if not exist
for i in GranuleList:
granuleFilepathstring = newpath+i
print(granuleFilepathstring)
if not os.path.exists(granuleFilepathstring):
os.makedirs(granuleFilepathstring)
granuleFilePathList = glob.glob(newpath + '/*')
#print granuleFilePathList
# Path where your Sentinel-2 data exist, assuming their are unzipped before
s2DataPath = '/media/fklingenberg/Expansion Drive/HentGranules/Data'
# List of Sentinel-2 data which data should be extracted from
s2DataListe = glob.glob(s2DataPath + '/*')
#print s2DataListe
fc_list = glob.glob(s2DataPath+'/*/GRANULE/*/')
#print fc_list
# Initalize string of copy location
copyTooLocation = ''
nameS2A_OPER = 'S2A_OPER'
#Credits to https://stackoverflow.com/a/3368991
def find_between( s, first, last ):
try:
start = s.index( first ) + len( first )
end = s.index( last, start )
return s[start:end]
except ValueError:
return ''
def find_between_r( s, first, last ):
try:
start = s.rindex( first ) + len( first )
end = s.rindex( last, start )
return s[start:end]
except ValueError:
return ''
def copytree(src, dst, symlinks=False, ignore=None):
for item in os.listdir(src):
s = os.path.join(src, item)
d = os.path.join(dst, item)
if os.path.isdir(s):
shutil.copytree(s, d, symlinks, ignore)
else:
shutil.copy2(s, d)
t1 = ''
t2 = ''
t3 = ''
for x in GranuleList:
for y in fc_list:
if y.endswith(x+'/'):
print x
print('og ')
print y
print('og filepath ')
#File will be saved in this folder
copyTooLocation = newpath + x
(filepath, filename) = os.path.split(y)
print filepath
print('og filename ')
print filename
print ('og soeking: ')
betweenF = find_between(y,'S2A_OPER','.SAFE')
nameS2A_OPER = copyTooLocation + '/S2A_OPER' + betweenF + '.SAFE'
if not os.path.exists(nameS2A_OPER):
os.makedirs(nameS2A_OPER)
t1 = s2DataPath + '/S2A_OPER' + betweenF +'.SAFE/AUX_DATA'
t2 = copyTooLocation + '/S2A_OPER' + betweenF +'.SAFE/AUX_DATA'
print t1
print t2
if not os.path.exists(t2):
os.makedirs(t2)
#shutil.copytree(t1, t2)
#copytree(t1,t2)
t3 = t2 + '/'
copy_tree(t1, t3)
t1 = s2DataPath + '/S2A_OPER' + betweenF +'.SAFE/DATASTRIP'
t2 = copyTooLocation + '/S2A_OPER' + betweenF +'.SAFE/DATASTRIP'
print t1
print t2
if not os.path.exists(t2):
os.makedirs(t2)
#shutil.copytree(t1, t2)
#copytree(t1,t2)
t3 = t2 + '/'
copy_tree(t1, t3)
###############
betweenGranule = find_between(y,'_MSI_L1C_','N02.04')
t4 = s2DataPath + '/S2A_OPER' + betweenF +'.SAFE/GRANULE/S2A_OPER_MSI_L1C_' + betweenGranule + 'N02.04'
t2 = copyTooLocation + '/S2A_OPER' + betweenF +'.SAFE/GRANULE'
t5 = copyTooLocation + '/S2A_OPER' + betweenF +'.SAFE/GRANULE/S2A_OPER_MSI_L1C_' + betweenGranule + 'N02.04'
print t1
print t2
if not os.path.exists(t2):
os.makedirs(t2)
if not os.path.exists(t5):
os.makedirs(t5)
#shutil.copytree(t1, t2)
#copytree(t1,t2)
t6 = t4 #+ '/'
t7 = t5 + '/'
copy_tree(t4, t7)
#print t5
#print betweenGranule
############
t1 = s2DataPath + '/S2A_OPER' + betweenF +'.SAFE/HTML'
t2 = copyTooLocation + '/S2A_OPER' + betweenF +'.SAFE/HTML'
print t1
print t2
if not os.path.exists(t2):
os.makedirs(t2)
#shutil.copytree(t1, t2)
#copytree(t1,t2)
t3 = t2 + '/'
copy_tree(t1, t3)
t1 = s2DataPath + '/S2A_OPER' + betweenF +'.SAFE/rep_info'
t2 = copyTooLocation + '/S2A_OPER' + betweenF +'.SAFE/rep_info'
print t1
print t2
if not os.path.exists(t2):
os.makedirs(t2)
#shutil.copytree(t1, t2)
#copytree(t1,t2)
t3 = t2 + '/'
copy_tree(t1, t3)
t1 = glob.glob(s2DataPath + '/S2A_OPER' + betweenF +'.SAFE/INSPIRE.xml')
strTemp = ''.join(t1)
t2 = copyTooLocation + '/S2A_OPER' + betweenF +'.SAFE'
print t1
print strTemp
print t2
if not os.path.exists(t2):
os.makedirs(t2)
#shutil.copytree(t1, t2)
#copytree(t1,t2)
t3 = t2 + '/'
shutil.copy2(strTemp, t3)
t1 = glob.glob(s2DataPath + '/S2A_OPER' + betweenF +'.SAFE/*.safe')
strTemp = ''.join(t1)
t2 = copyTooLocation + '/S2A_OPER' + betweenF +'.SAFE'
print t1
print t2
if not os.path.exists(t2):
os.makedirs(t2)
#shutil.copytree(t1, t2)
#copytree(t1,t2)
t3 = t2 + '/'
shutil.copy2(strTemp, t3)
t1 = glob.glob(s2DataPath + '/S2A_OPER' + betweenF +'.SAFE/S2A*.xml')
strTemp = ''.join(t1)
t2 = copyTooLocation + '/S2A_OPER' + betweenF +'.SAFE'
print t1
print t2
if not os.path.exists(t2):
os.makedirs(t2)
#shutil.copytree(t1, t2)
#copytree(t1,t2)
t3 = t2 + '/'
shutil.copy2(strTemp, t3)
#for longfilename in fc_list:
# if any (x in longfilename for x in GranuleList):
# if any (y in longfilename for y in granuleFilePathList):
# print longfilename
#(filepath, filename) = os.path.split(name)
#outName = glob.glob(filepath+"\\GRANULE\*\\S2A*.xml")
#strTemp = ''.join(outName)
## Change end of filename with correct file extention
#(filepath, filename) = os.path.split(strTemp)
#OutputImage = filepathresultat+"\\"+filename[:-4]+"_10m.pix"
#for i in s2DataListe:
# if any (x in (glob.glob(i+'/GRANULE/*/IMG_DATA/')) for x in GranuleList:
# print i