CIME Users Guide

CIME User's Guide

1. Introduction and Overview

• What is CIME?
  • Overview
  • Where is CIME located?
  • Stand-alone capability and download if not using as part of CESM or ACME download
• CIME directory structure and overview of contents
  • Style definitions
  • CIME version naming
  • Prerequisites
• CIME components and component sets
  • CESM specific compsets (pointer to a table)
  • ACME specific compsets (pointer to a table)
• CIME grids
  • CESM specific grids (pointer to a table)
  • ACME specific grids (pointer to a table)
• CIME supported machines
  • CESM supported machines (pointer to a table)
  • ACME supported machines (pointer to a table)
• Input data
• Diagnostics
• CIME quick start

2. Creating and Setting up a Case

• How to create a new case
  • New Component Set Naming Convention
  • New Overall Model Grid Naming Convention
  • Using create_newcase
• How to set up a case and customize the PE layout
  • Calling case.setup
  • Changing the PE layout
• Multi-instance component functionality
• Modifying an xml file
• Cloning a case (Experts only)

3. Building a case

• How do I build my model?
• Input data
  • User-created input data
  • Using the input data server
• Rebuilding the model

4. Running a case

• Customizing runtime settings
  • Controlling starting, stopping and restarting a run
  • Customizing component-specific namelist settings
  • Controlling output data
• Load balancing a case
  • Model timing data
  • Using model timing data
• How do I run a case?
  • Setting the time limits
  • Submitting the run
  • Restarting a run
  • Data flow during a model run
• Testing a case

5. Porting and Validating CIME on a new platform

• Porting Overview
• Step 1: Use create_newcase with a userdefined machine name
• Step 2: Enabling out-of-the box capability for your machine
• Step 3: Port Validation

6. Use Cases and FAQs

• BASICS 6.01: A basic example
• BASICS 6.02: How do I set up a branch or hybrid run?
• BASICS 6.03: What calendars are supported in CIME?
• BASICS 6.04: How do I change processor counts and component layouts on processors?
• BASICS 6.05: What are CIME xml variables and CIME environment variables?
• BASICS 6.06: How do I modify the value of CIME xml variables?
• BASICS 6.07: Why aren't my $CASEROOT xml variable changes working?
• BASICS 6.08: How do I run multiple cases all using a single executable?
• BASICS 6.09: How do I use the ESMF library and ESMF interfaces?
• BASICS 6.10: Why is there file locking and how does it work?
• BASICS 6.11: What are the directories and files in my case directory?
• IO 6.12: What is pio?
• IO 6.13: How do I use pnetcdf?
• CAM 6.14: How do I customize CAM output fields?
• CAM 6.15: How do I customize CAM forcings?
• CAM/CLM 6.16: How do I change history file output frequency and content for CAM and CLM during a run?
• CAM 6.17: How do I use B compset history output to create SST/ICE data files to drive an F compset?
• POP/CICE 6.18: How are CICE and POP decompositions set and how do I override them?
• POP 6.19: How do I initialize POP2 with a spun-up initial condition?
• DRIVER 6.20: Is there more information about the coupler/driver implementation?
• DRIVER 6.21: How do I pass in new fields between components?
• EXPERTS 6.22: How do I add a new user-defined component set?
• EXPERTS 6.23: How do I add a new user-defined grid?
• EXPERTS 6.24: How do I carry out data assimilation using CAM and DART?
• EXPERTS 6.25: How do I add a new CIME model component?

7. CIME Testing

• Testing overview
• Using create_production_test
• Using query_tests
• Using create_test
• Debugging Tests That Fail

8. Troubleshooting

• Troubleshooting create_newcase
• Troubleshooting job submission problems
• Additional Troubleshooting Information

Glossary

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