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mksurfdat.F90
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mksurfdat.F90
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program mksurfdat
!-----------------------------------------------------------------------
!BOP
!
! !PROGRAM: mksurfdat
!
! !DESCRIPTION:
! Creates land model surface dataset from original "raw" data files.
! Surface dataset contains model grid, pfts, inland water, glacier,
! soil texture, soil color, LAI and SAI, urban fraction, and urban
! parameters.
!
! !USES:
use shr_kind_mod , only : r8 => shr_kind_r8, r4 => shr_kind_r4
use fileutils , only : opnfil, getavu
use mklaiMod , only : mklai
use mkpctPftTypeMod , only : pct_pft_type, get_pct_p2l_array, get_pct_l2g_array, update_max_array
use mkpftConstantsMod , only : natpft_lb, natpft_ub, cft_lb, cft_ub, num_cft
use mkpftMod , only : pft_idx, pft_frc, mkpft, mkpftInit, mkpft_parse_oride
use mksoilMod , only : soil_sand, soil_clay, mksoiltex, mksoilInit, &
soil_color, mksoilcol, mkorganic, &
soil_fmax, mkfmax
use mkvocefMod , only : mkvocef
use mklanwatMod , only : mklakwat, mkwetlnd, mklakparams
use mkglacierregionMod , only : mkglacierregion
use mkglcmecMod , only : nglcec, mkglcmec, mkglcmecInit, mkglacier
use mkharvestMod , only : mkharvest, mkharvest_init, mkharvest_fieldname
use mkharvestMod , only : mkharvest_numtypes, mkharvest_parse_oride
use mkharvestMod , only : harvestDataType
use mkurbanparCommonMod, only : mkelev
use mkurbanparMod , only : mkurbanInit, mkurban, mkurbanpar, numurbl
use mkutilsMod , only : normalize_classes_by_gcell
use mkfileMod , only : mkfile
use mkvarpar , only : nlevsoi, elev_thresh, numstdpft
use mkvarctl
use nanMod , only : nan, bigint
use mkncdio , only : check_ret, ncd_put_time_slice
use mkdomainMod , only : domain_type, domain_read_map, domain_read, &
domain_write
use mkgdpMod , only : mkgdp
use mkpeatMod , only : mkpeat
use mksoildepthMod , only : mksoildepth
use mkagfirepkmonthMod , only : mkagfirepkmon
use mktopostatsMod , only : mktopostats
use mkVICparamsMod , only : mkVICparams
!
! !ARGUMENTS:
implicit none
include 'netcdf.inc'
!
! !REVISION HISTORY:
! Authors: Gordon Bonan, Sam Levis and Mariana Vertenstein
! Revised: Nan Rosenbloom to add fmax processing.
! 3/18/08: David Lawrence added organic matter processing
! 1/22/09: Keith Oleson added urban parameter processing
! 2/11/13: Sam Levis added abm, peat, and gdp processing for new fire model
!
!
! !LOCAL VARIABLES:
!EOP
integer :: nsoicol ! number of model color classes
integer :: k,m,n ! indices
integer :: ni,nj,ns_o ! indices
integer :: ier ! error status
integer :: ndiag,nfdyn ! unit numbers
integer :: ncid ! netCDF id
integer :: omode ! netCDF output mode
integer :: varid ! netCDF variable id
integer :: ret ! netCDF return status
integer :: ntim ! time sample for dynamic land use
integer :: year ! year for dynamic land use
integer :: year2 ! year for dynamic land use for harvest file
logical :: all_veg ! if gridcell will be 100% vegetated land-cover
real(r8) :: suma ! sum for error check
character(len=256) :: fgrddat ! grid data file
character(len=256) :: fsurdat ! output surface data file name (if blank, do not output a surface dataset)
character(len=256) :: fsurlog ! output surface log file name
character(len=256) :: fdyndat ! dynamic landuse data file name
character(len=256) :: fname ! generic filename
character(len=256) :: fhrvname ! generic harvest filename
character(len=256) :: string ! string read in
integer :: t1 ! timer
real(r8),parameter :: p5 = 0.5_r8 ! constant
real(r8),parameter :: p25 = 0.25_r8 ! constant
real(r8), allocatable :: landfrac_pft(:) ! PFT data: % land per gridcell
real(r8), allocatable :: pctlnd_pft(:) ! PFT data: % of gridcell for PFTs
real(r8), allocatable :: pctlnd_pft_dyn(:) ! PFT data: % of gridcell for dyn landuse PFTs
integer , allocatable :: pftdata_mask(:) ! mask indicating real or fake land type
type(pct_pft_type), allocatable :: pctnatpft(:) ! % of grid cell that is nat veg, and breakdown into PFTs
type(pct_pft_type), allocatable :: pctnatpft_max(:) ! % of grid cell maximum PFTs of the time series
type(pct_pft_type), allocatable :: pctcft(:) ! % of grid cell that is crop, and breakdown into CFTs
type(pct_pft_type), allocatable :: pctcft_max(:) ! % of grid cell maximum CFTs of the time series
real(r8) :: harvest_initval ! initial value for harvest variables
real(r8), pointer :: harvest1D(:) ! harvest 1D data: normalized harvesting
real(r8), pointer :: harvest2D(:,:) ! harvest 1D data: normalized harvesting
real(r8), allocatable :: pctgla(:) ! percent of grid cell that is glacier
real(r8), allocatable :: pctglc_gic(:) ! percent of grid cell that is gic (% of glc landunit)
real(r8), allocatable :: pctglc_icesheet(:) ! percent of grid cell that is ice sheet (% of glc landunit)
real(r8), allocatable :: pctglcmec(:,:) ! glacier_mec pct coverage in each class (% of landunit)
real(r8), allocatable :: topoglcmec(:,:) ! glacier_mec sfc elevation in each gridcell and class
real(r8), allocatable :: pctglcmec_gic(:,:) ! GIC pct coverage in each class (% of landunit)
real(r8), allocatable :: pctglcmec_icesheet(:,:) ! icesheet pct coverage in each class (% of landunit)
real(r8), allocatable :: elevclass(:) ! glacier_mec elevation classes
integer, allocatable :: glacier_region(:) ! glacier region ID
real(r8), allocatable :: pctlak(:) ! percent of grid cell that is lake
real(r8), allocatable :: pctwet(:) ! percent of grid cell that is wetland
real(r8), allocatable :: pcturb(:) ! percent of grid cell that is urbanized (total across all urban classes)
real(r8), allocatable :: urbn_classes(:,:) ! percent cover of each urban class, as % of total urban area
real(r8), allocatable :: urbn_classes_g(:,:)! percent cover of each urban class, as % of grid cell
real(r8), allocatable :: elev(:) ! glc elevation (m)
real(r8), allocatable :: fmax(:) ! fractional saturated area
integer , allocatable :: soicol(:) ! soil color
real(r8), allocatable :: pctsand(:,:) ! soil texture: percent sand
real(r8), allocatable :: pctclay(:,:) ! soil texture: percent clay
real(r8), allocatable :: ef1_btr(:) ! Isoprene emission factor for broadleaf
real(r8), allocatable :: ef1_fet(:) ! Isoprene emission factor for fine/everg
real(r8), allocatable :: ef1_fdt(:) ! Isoprene emission factor for fine/dec
real(r8), allocatable :: ef1_shr(:) ! Isoprene emission factor for shrubs
real(r8), allocatable :: ef1_grs(:) ! Isoprene emission factor for grasses
real(r8), allocatable :: ef1_crp(:) ! Isoprene emission factor for crops
real(r8), allocatable :: organic(:,:) ! organic matter density (kg/m3)
real(r8), allocatable :: gdp(:) ! GDP (x1000 1995 US$/capita)
real(r8), allocatable :: fpeat(:) ! peatland fraction of gridcell
real(r8), allocatable :: soildepth(:) ! soil depth (m)
integer , allocatable :: agfirepkmon(:) ! agricultural fire peak month
integer , allocatable :: urban_region(:) ! urban region ID
real(r8), allocatable :: topo_stddev(:) ! standard deviation of elevation (m)
real(r8), allocatable :: slope(:) ! topographic slope (degrees)
real(r8), allocatable :: vic_binfl(:) ! VIC b parameter (unitless)
real(r8), allocatable :: vic_ws(:) ! VIC Ws parameter (unitless)
real(r8), allocatable :: vic_dsmax(:) ! VIC Dsmax parameter (mm/day)
real(r8), allocatable :: vic_ds(:) ! VIC Ds parameter (unitless)
real(r8), allocatable :: lakedepth(:) ! lake depth (m)
real(r8) :: std_elev = -999.99_r8 ! Standard deviation of elevation (m) to use for entire grid
integer, allocatable :: harvind1D(:) ! Indices of 1D harvest fields
integer, allocatable :: harvind2D(:) ! Indices of 2D harvest fields
! NOTE(bja, 2015-01) added to work around a ?bug? causing 1x1_urbanc_alpha to abort. See
!/glade/p/cesm/cseg/inputdata/lnd/clm2/surfdata_map/README_c141219
logical :: urban_skip_abort_on_invalid_data_check
type(domain_type) :: ldomain
character(len=32) :: subname = 'mksrfdat' ! program name
type(harvestDataType) :: harvdata
namelist /clmexp/ &
mksrf_fgrid, &
mksrf_gridtype, &
mksrf_fvegtyp, &
mksrf_fhrvtyp, &
mksrf_fsoitex, &
mksrf_forganic, &
mksrf_fsoicol, &
mksrf_fvocef, &
mksrf_flakwat, &
mksrf_fwetlnd, &
mksrf_fglacier, &
mksrf_fglacierregion, &
mksrf_furbtopo, &
mksrf_fmax, &
mksrf_furban, &
mksrf_flai, &
mksrf_fdynuse, &
mksrf_fgdp, &
mksrf_fpeat, &
mksrf_fsoildepth, &
mksrf_fabm, &
mksrf_ftopostats, &
mksrf_fvic, &
mksrf_fch4, &
nglcec, &
numpft, &
soil_color, &
soil_sand, &
soil_fmax, &
soil_clay, &
pft_idx, &
all_veg, &
pft_frc, &
all_urban, &
no_inlandwet, &
map_fpft, &
map_flakwat, &
map_fwetlnd, &
map_fglacier, &
map_fglacierregion, &
map_fsoitex, &
map_fsoicol, &
map_furban, &
map_furbtopo, &
map_fmax, &
map_forganic, &
map_fvocef, &
map_flai, &
map_fharvest, &
map_fgdp, &
map_fpeat, &
map_fsoildepth, &
map_fabm, &
map_ftopostats, &
map_fvic, &
map_fch4, &
gitdescribe, &
outnc_large_files, &
outnc_double, &
outnc_dims, &
outnc_vic, &
outnc_3dglc, &
fsurdat, &
fdyndat, &
fsurlog, &
std_elev, &
urban_skip_abort_on_invalid_data_check
!-----------------------------------------------------------------------
! ======================================================================
! Read input namelist
! ======================================
! Must specify settings for the output grid:
! ======================================
! mksrf_fgrid -- Grid dataset
! ======================================
! Must specify settings for input high resolution datafiles
! ======================================
! mksrf_fglacier - Glacier dataset
! mksrf_fglacierregion - Glacier region ID dataset
! mksrf_flai ----- Leaf Area Index dataset
! mksrf_flakwat -- Lake water dataset
! mksrf_fwetlnd -- Wetland water dataset
! mksrf_forganic - Organic soil carbon dataset
! mksrf_fmax ----- Max fractional saturated area dataset
! mksrf_fsoicol -- Soil color dataset
! mksrf_fsoitex -- Soil texture dataset
! mksrf_furbtopo-- Topography dataset (for limiting urban areas)
! mksrf_furban --- Urban dataset
! mksrf_fvegtyp -- PFT vegetation type dataset
! mksrf_fhrvtyp -- harvest type dataset
! mksrf_fvocef -- Volatile Organic Compund Emission Factor dataset
! mksrf_fgdp ----- GDP dataset
! mksrf_fpeat ---- Peatland dataset
! mksrf_fsoildepth Soil depth dataset
! mksrf_fabm ----- Agricultural fire peak month dataset
! mksrf_ftopostats Topography statistics dataset
! mksrf_fvic ----- VIC parameters dataset
! mksrf_fch4 ----- inversion-derived CH4 parameters dataset
! ======================================
! Must specify mapping file for the different datafiles above
! ======================================
! map_fpft -------- Mapping for mksrf_fvegtyp
! map_flakwat ----- Mapping for mksrf_flakwat
! map_fwetlnd ----- Mapping for mksrf_fwetlnd
! map_fglacier ---- Mapping for mksrf_fglacier
! map_fglacierregion - Mapping for mksrf_fglacierregion
! map_fsoitex ----- Mapping for mksrf_fsoitex
! map_fsoicol ----- Mapping for mksrf_fsoicol
! map_furban ------ Mapping for mksrf_furban
! map_furbtopo ---- Mapping for mksrf_furbtopo
! map_fmax -------- Mapping for mksrf_fmax
! map_forganic ---- Mapping for mksrf_forganic
! map_fvocef ------ Mapping for mksrf_fvocef
! map_flai -------- Mapping for mksrf_flai
! map_fharvest ---- Mapping for mksrf_flai harvesting
! map_fgdp -------- Mapping for mksrf_fgdp
! map_fpeat ------- Mapping for mksrf_fpeat
! map_fsoildepth -- Mapping for mksrf_fsoildepth
! map_fabm -------- Mapping for mksrf_fabm
! map_ftopostats -- Mapping for mksrf_ftopostats
! map_fvic -------- Mapping for mksrf_fvic
! map_fch4 -------- Mapping for mksrf_fch4
! ======================================
! Optionally specify setting for:
! ======================================
! mksrf_fdynuse ----- ASCII text file that lists each year of pft files to use
! mksrf_gridtype ---- Type of grid (default is 'global')
! outnc_double ------ If output should be in double precision
! outnc_large_files - If output should be in NetCDF large file format
! outnc_vic --------- Output fields needed for VIC
! outnc_3dglc ------- Output 3D glacier fields (normally only needed for comparasion)
! nglcec ------------ If you want to change the number of Glacier elevation classes
! gitdescribe ------- Description of this version from git
! ======================================
! Optional settings to change values for entire area
! ======================================
! all_urban --------- If entire area is urban
! all_veg ----------- If entire area is to be vegetated (pft_idx and pft_frc then required)
! no_inlandwet ------ If wetland should be set to 0% over land
! soil_color -------- If you want to change the soil_color to this value everywhere
! soil_clay --------- If you want to change the soil_clay % to this value everywhere
! soil_fmax --------- If you want to change the soil_fmax to this value everywhere
! soil_sand --------- If you want to change the soil_sand % to this value everywhere
! pft_idx ----------- If you want to change to 100% veg covered with given PFT indices
! pft_frc ----------- Fractions that correspond to the pft_idx above
! ==================
! numpft (if different than default of 16)
! ======================================
! Optional settings to work around urban bug?
! ======================================
! urban_skip_abort_on_invalid_data_check
! ======================================================================
write(6,*) 'Attempting to initialize control settings .....'
mksrf_gridtype = 'global'
outnc_large_files = .false.
outnc_double = .true.
outnc_vic = .false.
outnc_3dglc = .false.
all_urban = .false.
all_veg = .false.
no_inlandwet = .true.
! default value for bug work around
urban_skip_abort_on_invalid_data_check = .false.
read(5, clmexp, iostat=ier)
if (ier /= 0) then
write(6,*)'error: namelist input resulted in error code ',ier
call abort()
endif
write (6,*) 'Attempting to create surface boundary data .....'
write (6,'(72a1)') ("-",n=1,60)
! ----------------------------------------------------------------------
! Error check namelist input
! ----------------------------------------------------------------------
if (urban_skip_abort_on_invalid_data_check) then
write(6, *) "WARNING: aborting on invalid data check in urban has been disabled!"
write(6, *) "WARNING: urban data may be invalid!"
end if
if (mksrf_fgrid /= ' ')then
fgrddat = mksrf_fgrid
write(6,*)'mksrf_fgrid = ',mksrf_fgrid
else
write (6,*)'must specify mksrf_fgrid'
call abort()
endif
if (trim(mksrf_gridtype) == 'global' .or. &
trim(mksrf_gridtype) == 'regional') then
write(6,*)'mksrf_gridtype = ',trim(mksrf_gridtype)
else
write(6,*)'mksrf_gridtype = ',trim(mksrf_gridtype)
write (6,*)'illegal mksrf_gridtype, must be global or regional '
call abort()
endif
if ( outnc_large_files )then
write(6,*)'Output file in NetCDF 64-bit large_files format'
end if
if ( outnc_double )then
write(6,*)'Output ALL data in file as 64-bit'
end if
if ( outnc_vic )then
write(6,*)'Output VIC fields'
end if
if ( outnc_3dglc )then
write(6,*)'Output optional 3D glacier fields (mostly used for verification of the glacier model)'
end if
if ( outnc_3dglc )then
write(6,*)'Output optional 3D glacier fields (mostly used for verification of the glacier model)'
end if
if ( all_urban )then
write(6,*) 'Output ALL data in file as 100% urban'
end if
if ( no_inlandwet )then
write(6,*) 'Set wetland to 0% over land'
end if
if (nglcec <= 0) then
write(6,*) 'nglcec must be at least 1'
call abort()
end if
!
! Call module initialization routines
!
call mksoilInit( )
call mkpftInit( zero_out_l=all_urban, all_veg_l=all_veg )
allocate ( elevclass(nglcec+1) )
call mkglcmecInit (elevclass)
call mkurbanInit (mksrf_furban)
if ( all_veg )then
write(6,*) 'Output ALL data in file as 100% vegetated'
end if
! ----------------------------------------------------------------------
! Determine land model grid, fractional land and land mask
! ----------------------------------------------------------------------
write(6,*)'calling domain_read'
if ( .not. domain_read_map(ldomain, fgrddat) )then
call domain_read(ldomain, fgrddat)
end if
write(6,*)'finished domain_read'
! Invalidate mask and frac for ldomain
!ldomain%mask = bigint
!ldomain%frac = nan
! Determine if will have 1d output
if (ldomain%ni /= -9999 .and. ldomain%nj /= -9999) then
write(6,*)'fsurdat is 2d lat/lon grid'
write(6,*)'nlon= ',ldomain%ni,' nlat= ',ldomain%nj
if (outnc_dims == 1) then
write(6,*)' writing output file in 1d gridcell format'
end if
else
write(6,*)'fsurdat is 1d gridcell grid'
outnc_dims = 1
end if
outnc_1d = .false.
if ((ldomain%ni == -9999 .and. ldomain%nj == -9999) .or. outnc_dims==1) then
outnc_1d = .true.
write(6,*)'output file will be 1d'
end if
! ----------------------------------------------------------------------
! Allocate and initialize dynamic memory
! ----------------------------------------------------------------------
ns_o = ldomain%ns
allocate ( landfrac_pft(ns_o) , &
pctlnd_pft(ns_o) , &
pftdata_mask(ns_o) , &
pctnatpft(ns_o) , &
pctnatpft_max(ns_o) , &
pctcft(ns_o) , &
pctcft_max(ns_o) , &
pctgla(ns_o) , &
pctlak(ns_o) , &
pctwet(ns_o) , &
pcturb(ns_o) , &
urban_region(ns_o) , &
urbn_classes(ns_o,numurbl) , &
urbn_classes_g(ns_o,numurbl) , &
pctsand(ns_o,nlevsoi) , &
pctclay(ns_o,nlevsoi) , &
soicol(ns_o) , &
gdp(ns_o) , &
fpeat(ns_o) , &
soildepth(ns_o) , &
agfirepkmon(ns_o) , &
topo_stddev(ns_o) , &
slope(ns_o) , &
vic_binfl(ns_o) , &
vic_ws(ns_o) , &
vic_dsmax(ns_o) , &
vic_ds(ns_o) , &
lakedepth(ns_o) , &
glacier_region(ns_o) )
landfrac_pft(:) = spval
pctlnd_pft(:) = spval
pftdata_mask(:) = -999
pctgla(:) = spval
pctlak(:) = spval
pctwet(:) = spval
pcturb(:) = spval
urban_region(:) = -999
urbn_classes(:,:) = spval
urbn_classes_g(:,:) = spval
pctsand(:,:) = spval
pctclay(:,:) = spval
soicol(:) = -999
gdp(:) = spval
fpeat(:) = spval
soildepth(:) = spval
agfirepkmon(:) = -999
topo_stddev(:) = spval
slope(:) = spval
vic_binfl(:) = spval
vic_ws(:) = spval
vic_dsmax(:) = spval
vic_ds(:) = spval
lakedepth(:) = spval
glacier_region(:) = -999
! ----------------------------------------------------------------------
! Open diagnostic output log file
! ----------------------------------------------------------------------
if (fsurlog == ' ') then
write(6,*)' must specify fsurlog in namelist'
stop
else
ndiag = getavu(); call opnfil (fsurlog, ndiag, 'f')
end if
if (urban_skip_abort_on_invalid_data_check) then
write(ndiag, *) "WARNING: aborting on invalid data check in urban has been disabled!"
write(ndiag, *) "WARNING: urban data may be invalid!"
end if
if (mksrf_fgrid /= ' ')then
write (ndiag,*)'using fractional land data from file= ', &
trim(mksrf_fgrid),' to create the surface dataset'
endif
if (trim(mksrf_gridtype) == 'global' .or. &
trim(mksrf_gridtype) == 'regional') then
write(6,*)'mksrf_gridtype = ',trim(mksrf_gridtype)
endif
write(ndiag,*) 'PFTs from: ',trim(mksrf_fvegtyp)
write(ndiag,*) 'harvest from: ',trim(mksrf_fhrvtyp)
write(ndiag,*) 'fmax from: ',trim(mksrf_fmax)
write(ndiag,*) 'glaciers from: ',trim(mksrf_fglacier)
write(ndiag,*) ' with: ', nglcec, ' glacier elevation classes'
write(ndiag,*) 'glacier region ID from: ',trim(mksrf_fglacierregion)
write(ndiag,*) 'urban topography from: ',trim(mksrf_furbtopo)
write(ndiag,*) 'urban from: ',trim(mksrf_furban)
write(ndiag,*) 'inland lake from: ',trim(mksrf_flakwat)
write(ndiag,*) 'inland wetland from: ',trim(mksrf_fwetlnd)
write(ndiag,*) 'soil texture from: ',trim(mksrf_fsoitex)
write(ndiag,*) 'soil organic from: ',trim(mksrf_forganic)
write(ndiag,*) 'soil color from: ',trim(mksrf_fsoicol)
write(ndiag,*) 'VOC emission factors from: ',trim(mksrf_fvocef)
write(ndiag,*) 'gdp from: ',trim(mksrf_fgdp)
write(ndiag,*) 'peat from: ',trim(mksrf_fpeat)
write(ndiag,*) 'soil depth from: ',trim(mksrf_fsoildepth)
write(ndiag,*) 'abm from: ',trim(mksrf_fabm)
write(ndiag,*) 'topography statistics from: ',trim(mksrf_ftopostats)
write(ndiag,*) 'VIC parameters from: ',trim(mksrf_fvic)
write(ndiag,*) 'CH4 parameters from: ',trim(mksrf_fch4)
write(ndiag,*)' mapping for pft ',trim(map_fpft)
write(ndiag,*)' mapping for lake water ',trim(map_flakwat)
write(ndiag,*)' mapping for wetland ',trim(map_fwetlnd)
write(ndiag,*)' mapping for glacier ',trim(map_fglacier)
write(ndiag,*)' mapping for glacier region ',trim(map_fglacierregion)
write(ndiag,*)' mapping for soil texture ',trim(map_fsoitex)
write(ndiag,*)' mapping for soil color ',trim(map_fsoicol)
write(ndiag,*)' mapping for soil organic ',trim(map_forganic)
write(ndiag,*)' mapping for urban ',trim(map_furban)
write(ndiag,*)' mapping for fmax ',trim(map_fmax)
write(ndiag,*)' mapping for VOC pct emis ',trim(map_fvocef)
write(ndiag,*)' mapping for harvest ',trim(map_fharvest)
write(ndiag,*)' mapping for lai/sai ',trim(map_flai)
write(ndiag,*)' mapping for urb topography ',trim(map_furbtopo)
write(ndiag,*)' mapping for GDP ',trim(map_fgdp)
write(ndiag,*)' mapping for peatlands ',trim(map_fpeat)
write(ndiag,*)' mapping for soil depth ',trim(map_fsoildepth)
write(ndiag,*)' mapping for ag fire pk month ',trim(map_fabm)
write(ndiag,*)' mapping for topography stats ',trim(map_ftopostats)
write(ndiag,*)' mapping for VIC parameters ',trim(map_fvic)
write(ndiag,*)' mapping for CH4 parameters ',trim(map_fch4)
if (mksrf_fdynuse /= ' ') then
write(6,*)'mksrf_fdynuse = ',trim(mksrf_fdynuse)
end if
! ----------------------------------------------------------------------
! Make surface dataset fields
! ----------------------------------------------------------------------
! Make PFTs [pctnatpft, pctcft] from dataset [fvegtyp]
call mkpft(ldomain, mapfname=map_fpft, fpft=mksrf_fvegtyp, &
ndiag=ndiag, pctlnd_o=pctlnd_pft, pctnatpft_o=pctnatpft, pctcft_o=pctcft)
! Create harvesting data at model resolution
if (all_veg) then
! In this case, we don't call mkharvest, so we want the harvest variables to be
! initialized reasonably.
harvest_initval = 0._r8
else
harvest_initval = spval
end if
call mkharvest_init( ns_o, harvest_initval, harvdata, mksrf_fhrvtyp )
if ( .not. all_veg )then
call mkharvest( ldomain, mapfname=map_fharvest, datfname=mksrf_fhrvtyp, &
ndiag=ndiag, harvdata=harvdata )
end if
! Make inland water [pctlak, pctwet] [flakwat] [fwetlnd]
call mklakwat (ldomain, mapfname=map_flakwat, datfname=mksrf_flakwat, &
ndiag=ndiag, zero_out=all_urban.or.all_veg, lake_o=pctlak)
call mkwetlnd (ldomain, mapfname=map_fwetlnd, datfname=mksrf_fwetlnd, &
ndiag=ndiag, zero_out=all_urban.or.all_veg.or.no_inlandwet, swmp_o=pctwet)
! Make glacier fraction [pctgla] from [fglacier] dataset
call mkglacier (ldomain, mapfname=map_fglacier, datfname=mksrf_fglacier, &
ndiag=ndiag, zero_out=all_urban.or.all_veg, glac_o=pctgla)
! Make glacier region ID [glacier_region] from [fglacierregion] dataset
call mkglacierregion (ldomain, mapfname=map_fglacierregion, &
datfname=mksrf_fglacierregion, ndiag=ndiag, &
glacier_region_o = glacier_region)
! Make soil texture [pctsand, pctclay] [fsoitex]
call mksoiltex (ldomain, mapfname=map_fsoitex, datfname=mksrf_fsoitex, &
ndiag=ndiag, sand_o=pctsand, clay_o=pctclay)
! Make soil color classes [soicol] [fsoicol]
call mksoilcol (ldomain, mapfname=map_fsoicol, datfname=mksrf_fsoicol, &
ndiag=ndiag, soil_color_o=soicol, nsoicol=nsoicol)
! Make fmax [fmax] from [fmax] dataset
allocate(fmax(ns_o))
fmax(:) = spval
call mkfmax (ldomain, mapfname=map_fmax, datfname=mksrf_fmax, &
ndiag=ndiag, fmax_o=fmax)
! Make GDP data [gdp] from [gdp]
call mkgdp (ldomain, mapfname=map_fgdp, datfname=mksrf_fgdp, &
ndiag=ndiag, gdp_o=gdp)
! Make peat data [fpeat] from [peatf]
call mkpeat (ldomain, mapfname=map_fpeat, datfname=mksrf_fpeat, &
ndiag=ndiag, peat_o=fpeat)
! Make soil depth data [soildepth] from [soildepthf]
call mksoildepth (ldomain, mapfname=map_fsoildepth, datfname=mksrf_fsoildepth, &
ndiag=ndiag, soildepth_o=soildepth)
! Make agricultural fire peak month data [abm] from [abm]
call mkagfirepkmon (ldomain, mapfname=map_fabm, datfname=mksrf_fabm, &
ndiag=ndiag, agfirepkmon_o=agfirepkmon)
! Make urban fraction [pcturb] from [furban] dataset
call mkurban (ldomain, mapfname=map_furban, datfname=mksrf_furban, &
ndiag=ndiag, zero_out=all_veg, urbn_o=pcturb, urbn_classes_o=urbn_classes, &
region_o=urban_region)
! Make elevation [elev] from [ftopo, ffrac] dataset
! Used only to screen pcturb
! Screen pcturb by elevation threshold from elev dataset
if ( .not. all_urban .and. .not. all_veg )then
allocate(elev(ns_o))
elev(:) = spval
! NOTE(wjs, 2016-01-15) This uses the 'TOPO_ICE' variable for historical reasons
! (this same dataset used to be used for glacier-related purposes as well).
! TODO(wjs, 2016-01-15) A better solution for this urban screening would probably
! be to modify the raw urban data; in that case, I believe we could remove
! furbtopo.
call mkelev (ldomain, mapfname=map_furbtopo, datfname=mksrf_furbtopo, &
varname='TOPO_ICE', ndiag=ndiag, elev_o=elev)
where (elev .gt. elev_thresh)
pcturb = 0._r8
end where
deallocate(elev)
end if
! Compute topography statistics [topo_stddev, slope] from [ftopostats]
call mktopostats (ldomain, mapfname=map_ftopostats, datfname=mksrf_ftopostats, &
ndiag=ndiag, topo_stddev_o=topo_stddev, slope_o=slope, std_elev=std_elev)
! Make VIC parameters [binfl, ws, dsmax, ds] from [fvic]
if ( outnc_vic )then
call mkVICparams (ldomain, mapfname=map_fvic, datfname=mksrf_fvic, ndiag=ndiag, &
binfl_o=vic_binfl, ws_o=vic_ws, dsmax_o=vic_dsmax, ds_o=vic_ds)
end if
! Make lake depth [lakedepth] from [flakwat]
call mklakparams (ldomain, mapfname=map_flakwat, datfname=mksrf_flakwat, ndiag=ndiag, &
lakedepth_o=lakedepth)
! Make organic matter density [organic] [forganic]
allocate (organic(ns_o,nlevsoi))
organic(:,:) = spval
call mkorganic (ldomain, mapfname=map_forganic, datfname=mksrf_forganic, &
ndiag=ndiag, organic_o=organic)
! Make VOC emission factors for isoprene &
! [ef1_btr,ef1_fet,ef1_fdt,ef1_shr,ef1_grs,ef1_crp]
allocate ( ef1_btr(ns_o) , &
ef1_fet(ns_o) , &
ef1_fdt(ns_o) , &
ef1_shr(ns_o) , &
ef1_grs(ns_o) , &
ef1_crp(ns_o) )
ef1_btr(:) = 0._r8
ef1_fet(:) = 0._r8
ef1_fdt(:) = 0._r8
ef1_shr(:) = 0._r8
ef1_grs(:) = 0._r8
ef1_crp(:) = 0._r8
call mkvocef (ldomain, mapfname=map_fvocef, datfname=mksrf_fvocef, ndiag=ndiag, &
ef_btr_o=ef1_btr, ef_fet_o=ef1_fet, ef_fdt_o=ef1_fdt, &
ef_shr_o=ef1_shr, ef_grs_o=ef1_grs, ef_crp_o=ef1_crp)
! Do landuse changes such as for the poles, etc.
call change_landuse( ldomain, dynpft=.false. )
do n = 1,ns_o
! Assume wetland, glacier and/or lake when dataset landmask implies ocean
! (assume medium soil color (15) and loamy texture).
! Also set pftdata_mask here
if (pctlnd_pft(n) < 1.e-6_r8) then
pftdata_mask(n) = 0
soicol(n) = 15
if (pctgla(n) < 1.e-6_r8) then
pctwet(n) = 100._r8 - pctlak(n)
pctgla(n) = 0._r8
else
pctwet(n) = max(100._r8 - pctgla(n) - pctlak(n), 0.0_r8)
end if
pcturb(n) = 0._r8
call pctnatpft(n)%set_pct_l2g(0._r8)
call pctcft(n)%set_pct_l2g(0._r8)
pctsand(n,:) = 43._r8
pctclay(n,:) = 18._r8
organic(n,:) = 0._r8
else
pftdata_mask(n) = 1
end if
! Truncate all percentage fields on output grid. This is needed to
! insure that wt is zero (not a very small number such as
! 1e-16) where it really should be zero
do k = 1,nlevsoi
pctsand(n,k) = float(nint(pctsand(n,k)))
pctclay(n,k) = float(nint(pctclay(n,k)))
end do
pctlak(n) = float(nint(pctlak(n)))
pctwet(n) = float(nint(pctwet(n)))
pctgla(n) = float(nint(pctgla(n)))
! Make sure sum of land cover types does not exceed 100. If it does,
! subtract excess from most dominant land cover.
suma = pctlak(n) + pctwet(n) + pcturb(n) + pctgla(n)
if (suma > 250._r4) then
write (6,*) subname, ' error: sum of pctlak, pctwet,', &
'pcturb and pctgla is greater than 250%'
write (6,*)'n,pctlak,pctwet,pcturb,pctgla= ', &
n,pctlak(n),pctwet(n),pcturb(n),pctgla(n)
call abort()
else if (suma > 100._r4) then
pctlak(n) = pctlak(n) * 100._r8/suma
pctwet(n) = pctwet(n) * 100._r8/suma
pcturb(n) = pcturb(n) * 100._r8/suma
pctgla(n) = pctgla(n) * 100._r8/suma
end if
end do
call normalizencheck_landuse(ldomain)
! Write out sum of PFT's
do k = natpft_lb,natpft_ub
suma = 0._r8
do n = 1,ns_o
suma = suma + pctnatpft(n)%get_one_pct_p2g(k)
enddo
write(6,*) 'sum over domain of pft ',k,suma
enddo
write(6,*)
do k = cft_lb,cft_ub
suma = 0._r8
do n = 1,ns_o
suma = suma + pctcft(n)%get_one_pct_p2g(k)
enddo
write(6,*) 'sum over domain of cft ',k,suma
enddo
write(6,*)
! Make final values of percent urban by class
! This call needs to occur after all corrections are made to pcturb
call normalize_classes_by_gcell(urbn_classes, pcturb, urbn_classes_g)
! Make glacier multiple elevation classes [pctglcmec,topoglcmec] from [fglacier] dataset
! This call needs to occur after pctgla has been adjusted for the final time
allocate (pctglcmec(ns_o,nglcec), &
topoglcmec(ns_o,nglcec) )
if ( outnc_3dglc )then
allocate( &
pctglcmec_gic(ns_o,nglcec), &
pctglcmec_icesheet(ns_o,nglcec))
allocate (pctglc_gic(ns_o))
allocate (pctglc_icesheet(ns_o))
end if
pctglcmec(:,:) = spval
topoglcmec(:,:) = spval
if ( outnc_3dglc )then
call mkglcmec (ldomain, mapfname=map_fglacier, &
datfname_fglacier=mksrf_fglacier, ndiag=ndiag, &
pctglcmec_o=pctglcmec, topoglcmec_o=topoglcmec, &
pctglcmec_gic_o=pctglcmec_gic, pctglcmec_icesheet_o=pctglcmec_icesheet, &
pctglc_gic_o=pctglc_gic, pctglc_icesheet_o=pctglc_icesheet)
else
call mkglcmec (ldomain, mapfname=map_fglacier, &
datfname_fglacier=mksrf_fglacier, ndiag=ndiag, &
pctglcmec_o=pctglcmec, topoglcmec_o=topoglcmec )
end if
! Determine fractional land from pft dataset
do n = 1,ns_o
landfrac_pft(n) = pctlnd_pft(n)/100._r8
end do
! ----------------------------------------------------------------------
! Create surface dataset
! ----------------------------------------------------------------------
! Create netCDF surface dataset.
! If fsurdat is blank, then we do not write a surface dataset - but we may still
! write a dynamic landuse file. This is useful if we are creating many datasets at
! once, and don't want duplicate surface datasets.
!
! TODO(wjs, 2016-01-26) Ideally, we would also avoid doing the processing of
! variables that are just needed by the surface dataset (not by the dynamic landuse
! file). However, this would require some analysis of the above code, to determine
! which processing is needed (directly or indirectly) in order to create a dynamic
! landuse file.
if (fsurdat /= ' ') then
call mkfile(ldomain, trim(fsurdat), harvdata, dynlanduse = .false.)
call domain_write(ldomain, fsurdat)
call check_ret(nf_open(trim(fsurdat), nf_write, ncid), subname)
call check_ret(nf_set_fill (ncid, nf_nofill, omode), subname)
! Write fields OTHER THAN lai, sai, heights, and urban parameters to netcdf surface dataset
call check_ret(nf_inq_varid(ncid, 'natpft', varid), subname)
call check_ret(nf_put_var_int(ncid, varid, (/(n,n=natpft_lb,natpft_ub)/)), subname)
if (num_cft > 0) then
call check_ret(nf_inq_varid(ncid, 'cft', varid), subname)
call check_ret(nf_put_var_int(ncid, varid, (/(n,n=cft_lb,cft_ub)/)), subname)
end if
call check_ret(nf_inq_varid(ncid, 'PFTDATA_MASK', varid), subname)
call check_ret(nf_put_var_int(ncid, varid, pftdata_mask), subname)
call check_ret(nf_inq_varid(ncid, 'LANDFRAC_PFT', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, landfrac_pft), subname)
call check_ret(nf_inq_varid(ncid, 'mxsoil_color', varid), subname)
call check_ret(nf_put_var_int(ncid, varid, nsoicol), subname)
call check_ret(nf_inq_varid(ncid, 'SOIL_COLOR', varid), subname)
call check_ret(nf_put_var_int(ncid, varid, soicol), subname)
call check_ret(nf_inq_varid(ncid, 'PCT_SAND', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, pctsand), subname)
call check_ret(nf_inq_varid(ncid, 'PCT_CLAY', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, pctclay), subname)
call check_ret(nf_inq_varid(ncid, 'PCT_WETLAND', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, pctwet), subname)
call check_ret(nf_inq_varid(ncid, 'PCT_LAKE', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, pctlak), subname)
call check_ret(nf_inq_varid(ncid, 'PCT_GLACIER', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, pctgla), subname)
call check_ret(nf_inq_varid(ncid, 'GLACIER_REGION', varid), subname)
call check_ret(nf_put_var_int(ncid, varid, glacier_region), subname)
call check_ret(nf_inq_varid(ncid, 'PCT_GLC_MEC', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, pctglcmec), subname)
call check_ret(nf_inq_varid(ncid, 'GLC_MEC', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, elevclass), subname)
call check_ret(nf_inq_varid(ncid, 'TOPO_GLC_MEC', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, topoglcmec), subname)
if ( outnc_3dglc )then
call check_ret(nf_inq_varid(ncid, 'PCT_GLC_MEC_GIC', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, pctglcmec_gic), subname)
call check_ret(nf_inq_varid(ncid, 'PCT_GLC_MEC_ICESHEET', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, pctglcmec_icesheet), subname)
call check_ret(nf_inq_varid(ncid, 'PCT_GLC_GIC', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, pctglc_gic), subname)
call check_ret(nf_inq_varid(ncid, 'PCT_GLC_ICESHEET', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, pctglc_icesheet), subname)
end if
if ( outnc_3dglc )then
call check_ret(nf_inq_varid(ncid, 'PCT_GLC_MEC_GIC', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, pctglcmec_gic), subname)
call check_ret(nf_inq_varid(ncid, 'PCT_GLC_MEC_ICESHEET', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, pctglcmec_icesheet), subname)
call check_ret(nf_inq_varid(ncid, 'PCT_GLC_GIC', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, pctglc_gic), subname)
call check_ret(nf_inq_varid(ncid, 'PCT_GLC_ICESHEET', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, pctglc_icesheet), subname)
end if
call check_ret(nf_inq_varid(ncid, 'PCT_URBAN', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, urbn_classes_g), subname)
call check_ret(nf_inq_varid(ncid, 'PCT_NATVEG', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, get_pct_l2g_array(pctnatpft)), subname)
call check_ret(nf_inq_varid(ncid, 'PCT_CROP', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, get_pct_l2g_array(pctcft)), subname)
call check_ret(nf_inq_varid(ncid, 'PCT_NAT_PFT', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, get_pct_p2l_array(pctnatpft)), subname)
if (num_cft > 0) then
call check_ret(nf_inq_varid(ncid, 'PCT_CFT', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, get_pct_p2l_array(pctcft)), subname)
end if
call harvdata%getFieldsIdx( harvind1D, harvind2D )
do k = 1, harvdata%num1Dfields()
call check_ret(nf_inq_varid(ncid, trim(mkharvest_fieldname(harvind1D(k),constant=.true.)), varid), subname)
harvest1D => harvdata%get1DFieldPtr( harvind1D(k), output=.true. )
call check_ret(nf_put_var_double(ncid, varid, harvest1D), subname)
end do
do k = 1, harvdata%num2Dfields()
call check_ret(nf_inq_varid(ncid, trim(mkharvest_fieldname(harvind2D(k),constant=.true.)), varid), subname)
harvest2D => harvdata%get2DFieldPtr( harvind2D(k), output=.true. )
call check_ret(nf_put_var_double(ncid, varid, harvest2D), subname)
end do
deallocate( harvind1D, harvind2D )
call check_ret(nf_inq_varid(ncid, 'FMAX', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, fmax), subname)
call check_ret(nf_inq_varid(ncid, 'gdp', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, gdp), subname)
call check_ret(nf_inq_varid(ncid, 'peatf', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, fpeat), subname)
! call check_ret(nf_inq_varid(ncid, 'Avg_Depth_Median', varid), subname)
call check_ret(nf_inq_varid(ncid, 'zbedrock', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, soildepth), subname)
call check_ret(nf_inq_varid(ncid, 'abm', varid), subname)
call check_ret(nf_put_var_int(ncid, varid, agfirepkmon), subname)
call check_ret(nf_inq_varid(ncid, 'SLOPE', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, slope), subname)
call check_ret(nf_inq_varid(ncid, 'STD_ELEV', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, topo_stddev), subname)
if ( outnc_vic )then
call check_ret(nf_inq_varid(ncid, 'binfl', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, vic_binfl), subname)
call check_ret(nf_inq_varid(ncid, 'Ws', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, vic_ws), subname)
call check_ret(nf_inq_varid(ncid, 'Dsmax', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, vic_dsmax), subname)
call check_ret(nf_inq_varid(ncid, 'Ds', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, vic_ds), subname)
end if
call check_ret(nf_inq_varid(ncid, 'LAKEDEPTH', varid), subname)
call check_ret(nf_put_var_double(ncid, varid, lakedepth), subname)