{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":124354582,"defaultBranch":"master","name":"BALSAMIC","ownerLogin":"Clinical-Genomics","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2018-03-08T07:34:46.000Z","ownerAvatar":"https://github.com/avatars/u/6412433?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1724933387.0","currentOid":""},"activityList":{"items":[{"before":"5b6a784692789091017526a686219cce2efbc67c","after":"b77bb7027a0ef667527be5e1e0342fe1b180971c","ref":"refs/heads/merge_vardict_tnscope","pushedAt":"2024-09-11T16:27:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mathiasbio","name":"Mathias Johansson","path":"/mathiasbio","primaryAvatarUrl":"https://github.com/avatars/u/14308912?s=80&v=4"},"commit":{"message":"bug fix","shortMessageHtmlLink":"bug fix"}},{"before":"aacc622ca546198d1dbecb6b91b996a2fb47f655","after":"5b6a784692789091017526a686219cce2efbc67c","ref":"refs/heads/merge_vardict_tnscope","pushedAt":"2024-09-11T16:19:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mathiasbio","name":"Mathias Johansson","path":"/mathiasbio","primaryAvatarUrl":"https://github.com/avatars/u/14308912?s=80&v=4"},"commit":{"message":"revert sentieon alignmetrics to picard due to missing values","shortMessageHtmlLink":"revert sentieon alignmetrics to picard due to missing values"}},{"before":"408f2f1b2458b1a899d5752e86598d9eb9583b4f","after":"aacc622ca546198d1dbecb6b91b996a2fb47f655","ref":"refs/heads/merge_vardict_tnscope","pushedAt":"2024-09-11T09:34:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mathiasbio","name":"Mathias Johansson","path":"/mathiasbio","primaryAvatarUrl":"https://github.com/avatars/u/14308912?s=80&v=4"},"commit":{"message":"add trim soft clip to tnscope tga","shortMessageHtmlLink":"add trim soft clip to tnscope tga"}},{"before":"2a07bb10d2c0cb1a14288c46152a92be9434886f","after":"9569ebdd5954ac0c377fd798b8a7106cb49427fe","ref":"refs/heads/cnvkit_to_gens","pushedAt":"2024-09-10T12:03:53.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"mathiasbio","name":"Mathias Johansson","path":"/mathiasbio","primaryAvatarUrl":"https://github.com/avatars/u/14308912?s=80&v=4"},"commit":{"message":"Merge branch 'update_cnvkit_pons' into cnvkit_to_gens","shortMessageHtmlLink":"Merge branch 'update_cnvkit_pons' into cnvkit_to_gens"}},{"before":"f4e631b9dc59ca6f246389940c78f5c64ffdfc65","after":"408f2f1b2458b1a899d5752e86598d9eb9583b4f","ref":"refs/heads/merge_vardict_tnscope","pushedAt":"2024-09-09T17:27:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mathiasbio","name":"Mathias Johansson","path":"/mathiasbio","primaryAvatarUrl":"https://github.com/avatars/u/14308912?s=80&v=4"},"commit":{"message":"pon consent doc added","shortMessageHtmlLink":"pon consent doc added"}},{"before":"9979f336c09b46dc1914aad365fc64f484548c58","after":"f4e631b9dc59ca6f246389940c78f5c64ffdfc65","ref":"refs/heads/merge_vardict_tnscope","pushedAt":"2024-09-09T14:09:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mathiasbio","name":"Mathias Johansson","path":"/mathiasbio","primaryAvatarUrl":"https://github.com/avatars/u/14308912?s=80&v=4"},"commit":{"message":"update docs","shortMessageHtmlLink":"update docs"}},{"before":"259bb16e7181830e3583398e3b4464599b15c020","after":"9979f336c09b46dc1914aad365fc64f484548c58","ref":"refs/heads/merge_vardict_tnscope","pushedAt":"2024-09-09T12:30:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mathiasbio","name":"Mathias Johansson","path":"/mathiasbio","primaryAvatarUrl":"https://github.com/avatars/u/14308912?s=80&v=4"},"commit":{"message":"remove alt_f1r2 filter from tga","shortMessageHtmlLink":"remove alt_f1r2 filter from tga"}},{"before":"ac34d119728f76572f850c572927e9fb9a66a320","after":"259bb16e7181830e3583398e3b4464599b15c020","ref":"refs/heads/merge_vardict_tnscope","pushedAt":"2024-09-04T14:00:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mathiasbio","name":"Mathias Johansson","path":"/mathiasbio","primaryAvatarUrl":"https://github.com/avatars/u/14308912?s=80&v=4"},"commit":{"message":"change final umi bamfile name","shortMessageHtmlLink":"change final umi bamfile name"}},{"before":"7065b55a032709c63d4e259f71282ed689c9a991","after":"ac34d119728f76572f850c572927e9fb9a66a320","ref":"refs/heads/merge_vardict_tnscope","pushedAt":"2024-09-03T15:37:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mathiasbio","name":"Mathias Johansson","path":"/mathiasbio","primaryAvatarUrl":"https://github.com/avatars/u/14308912?s=80&v=4"},"commit":{"message":"add filters to constants","shortMessageHtmlLink":"add filters to constants"}},{"before":"2027f512624497c7ae383076b1d95892964398d1","after":"7065b55a032709c63d4e259f71282ed689c9a991","ref":"refs/heads/merge_vardict_tnscope","pushedAt":"2024-09-03T15:12:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mathiasbio","name":"Mathias Johansson","path":"/mathiasbio","primaryAvatarUrl":"https://github.com/avatars/u/14308912?s=80&v=4"},"commit":{"message":"update docs and to tga tnscope filters","shortMessageHtmlLink":"update docs and to tga tnscope filters"}},{"before":"608d6c2b90c3cf05d7337a82d245fedcd264a0a1","after":"2027f512624497c7ae383076b1d95892964398d1","ref":"refs/heads/merge_vardict_tnscope","pushedAt":"2024-09-03T10:56:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mathiasbio","name":"Mathias Johansson","path":"/mathiasbio","primaryAvatarUrl":"https://github.com/avatars/u/14308912?s=80&v=4"},"commit":{"message":"remove annotated vardict and tnscope intermediate files","shortMessageHtmlLink":"remove annotated vardict and tnscope intermediate files"}},{"before":"0217a9234e88cf37f404916ddad15fec20cf8809","after":"608d6c2b90c3cf05d7337a82d245fedcd264a0a1","ref":"refs/heads/merge_vardict_tnscope","pushedAt":"2024-09-02T13:28:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mathiasbio","name":"Mathias Johansson","path":"/mathiasbio","primaryAvatarUrl":"https://github.com/avatars/u/14308912?s=80&v=4"},"commit":{"message":"clean up","shortMessageHtmlLink":"clean up"}},{"before":"c1aabe1f65cd528e6d6cbb1b9e5f520296dbc0ff","after":"0217a9234e88cf37f404916ddad15fec20cf8809","ref":"refs/heads/merge_vardict_tnscope","pushedAt":"2024-09-02T13:22:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mathiasbio","name":"Mathias Johansson","path":"/mathiasbio","primaryAvatarUrl":"https://github.com/avatars/u/14308912?s=80&v=4"},"commit":{"message":"black","shortMessageHtmlLink":"black"}},{"before":"1e19d652df1071b270d2df6ca1621fe09ed20d14","after":"c1aabe1f65cd528e6d6cbb1b9e5f520296dbc0ff","ref":"refs/heads/merge_vardict_tnscope","pushedAt":"2024-09-02T13:21:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mathiasbio","name":"Mathias Johansson","path":"/mathiasbio","primaryAvatarUrl":"https://github.com/avatars/u/14308912?s=80&v=4"},"commit":{"message":"add tmp variables","shortMessageHtmlLink":"add tmp variables"}},{"before":"11fb4a500b0f5eeebbe38956134c5ccd96d4eae7","after":"1e19d652df1071b270d2df6ca1621fe09ed20d14","ref":"refs/heads/merge_vardict_tnscope","pushedAt":"2024-09-02T11:30:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mathiasbio","name":"Mathias Johansson","path":"/mathiasbio","primaryAvatarUrl":"https://github.com/avatars/u/14308912?s=80&v=4"},"commit":{"message":"clean up","shortMessageHtmlLink":"clean up"}},{"before":"430da216efc16283dc0bc4365541b9e268eae222","after":"11fb4a500b0f5eeebbe38956134c5ccd96d4eae7","ref":"refs/heads/merge_vardict_tnscope","pushedAt":"2024-09-02T11:06:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mathiasbio","name":"Mathias Johansson","path":"/mathiasbio","primaryAvatarUrl":"https://github.com/avatars/u/14308912?s=80&v=4"},"commit":{"message":"fix pytests","shortMessageHtmlLink":"fix pytests"}},{"before":"80257eb050f613f92368d254208f4bc7165b40f0","after":"430da216efc16283dc0bc4365541b9e268eae222","ref":"refs/heads/merge_vardict_tnscope","pushedAt":"2024-09-02T10:44:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mathiasbio","name":"Mathias Johansson","path":"/mathiasbio","primaryAvatarUrl":"https://github.com/avatars/u/14308912?s=80&v=4"},"commit":{"message":"fix rules","shortMessageHtmlLink":"fix rules"}},{"before":"f75b72734d47a0e88b13848071eac4e022139f00","after":"80257eb050f613f92368d254208f4bc7165b40f0","ref":"refs/heads/merge_vardict_tnscope","pushedAt":"2024-09-02T09:43:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mathiasbio","name":"Mathias Johansson","path":"/mathiasbio","primaryAvatarUrl":"https://github.com/avatars/u/14308912?s=80&v=4"},"commit":{"message":"fix","shortMessageHtmlLink":"fix"}},{"before":"5198a0aab5103a20078f8cce0772389b9c64a7cc","after":"f75b72734d47a0e88b13848071eac4e022139f00","ref":"refs/heads/merge_vardict_tnscope","pushedAt":"2024-08-29T14:44:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mathiasbio","name":"Mathias Johansson","path":"/mathiasbio","primaryAvatarUrl":"https://github.com/avatars/u/14308912?s=80&v=4"},"commit":{"message":"fix","shortMessageHtmlLink":"fix"}},{"before":"055bda00a90ff305d80b853a1ca83f7dfcd85a89","after":"5198a0aab5103a20078f8cce0772389b9c64a7cc","ref":"refs/heads/merge_vardict_tnscope","pushedAt":"2024-08-29T14:40:06.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"mathiasbio","name":"Mathias Johansson","path":"/mathiasbio","primaryAvatarUrl":"https://github.com/avatars/u/14308912?s=80&v=4"},"commit":{"message":"fic","shortMessageHtmlLink":"fic"}},{"before":"25dc5e3038b474142851349c8ee49826cc27351a","after":"055bda00a90ff305d80b853a1ca83f7dfcd85a89","ref":"refs/heads/merge_vardict_tnscope","pushedAt":"2024-08-29T14:17:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mathiasbio","name":"Mathias Johansson","path":"/mathiasbio","primaryAvatarUrl":"https://github.com/avatars/u/14308912?s=80&v=4"},"commit":{"message":"fix","shortMessageHtmlLink":"fix"}},{"before":"9de7fa18f1fe074bb7ebb85784a861a7526c2f6d","after":"25dc5e3038b474142851349c8ee49826cc27351a","ref":"refs/heads/merge_vardict_tnscope","pushedAt":"2024-08-29T13:54:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mathiasbio","name":"Mathias Johansson","path":"/mathiasbio","primaryAvatarUrl":"https://github.com/avatars/u/14308912?s=80&v=4"},"commit":{"message":"add threads","shortMessageHtmlLink":"add threads"}},{"before":"d8a71b0954d41e1055d3d4fc232d24e0b0bb883d","after":"9de7fa18f1fe074bb7ebb85784a861a7526c2f6d","ref":"refs/heads/merge_vardict_tnscope","pushedAt":"2024-08-29T13:38:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mathiasbio","name":"Mathias Johansson","path":"/mathiasbio","primaryAvatarUrl":"https://github.com/avatars/u/14308912?s=80&v=4"},"commit":{"message":"fix","shortMessageHtmlLink":"fix"}},{"before":"1aa5e95bca1a15e8c4806df4ac71c888ab5321e7","after":"d8a71b0954d41e1055d3d4fc232d24e0b0bb883d","ref":"refs/heads/merge_vardict_tnscope","pushedAt":"2024-08-29T13:32:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mathiasbio","name":"Mathias Johansson","path":"/mathiasbio","primaryAvatarUrl":"https://github.com/avatars/u/14308912?s=80&v=4"},"commit":{"message":"fix sort","shortMessageHtmlLink":"fix sort"}},{"before":"fd0c5b51d356f29a837b78293be54a09b7325438","after":"1aa5e95bca1a15e8c4806df4ac71c888ab5321e7","ref":"refs/heads/merge_vardict_tnscope","pushedAt":"2024-08-29T12:45:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mathiasbio","name":"Mathias Johansson","path":"/mathiasbio","primaryAvatarUrl":"https://github.com/avatars/u/14308912?s=80&v=4"},"commit":{"message":"change LC","shortMessageHtmlLink":"change LC"}},{"before":"9cd21ece1292e6187f570608887d2a0715bb96fd","after":"fd0c5b51d356f29a837b78293be54a09b7325438","ref":"refs/heads/merge_vardict_tnscope","pushedAt":"2024-08-29T12:32:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mathiasbio","name":"Mathias Johansson","path":"/mathiasbio","primaryAvatarUrl":"https://github.com/avatars/u/14308912?s=80&v=4"},"commit":{"message":"fix","shortMessageHtmlLink":"fix"}},{"before":null,"after":"b8d77f348cd8d58941da2eef67ff0e15e8f53a5c","ref":"refs/heads/update_qc_thresholds","pushedAt":"2024-08-29T12:09:47.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mathiasbio","name":"Mathias Johansson","path":"/mathiasbio","primaryAvatarUrl":"https://github.com/avatars/u/14308912?s=80&v=4"},"commit":{"message":"update gc thresholds for panels","shortMessageHtmlLink":"update gc thresholds for panels"}},{"before":"02fe2632e609aa474aa3fd3c8b66fbbc7dca409e","after":"9cd21ece1292e6187f570608887d2a0715bb96fd","ref":"refs/heads/merge_vardict_tnscope","pushedAt":"2024-08-29T11:23:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mathiasbio","name":"Mathias Johansson","path":"/mathiasbio","primaryAvatarUrl":"https://github.com/avatars/u/14308912?s=80&v=4"},"commit":{"message":"replace picard with bcftools","shortMessageHtmlLink":"replace picard with bcftools"}},{"before":"4569bb5372b8ae7fdd57a08a512474967de92f62","after":"02fe2632e609aa474aa3fd3c8b66fbbc7dca409e","ref":"refs/heads/merge_vardict_tnscope","pushedAt":"2024-08-28T12:37:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mathiasbio","name":"Mathias Johansson","path":"/mathiasbio","primaryAvatarUrl":"https://github.com/avatars/u/14308912?s=80&v=4"},"commit":{"message":"update","shortMessageHtmlLink":"update"}},{"before":"158c696ea8e77c71f6bfdaedb05b2994c26377e2","after":"4569bb5372b8ae7fdd57a08a512474967de92f62","ref":"refs/heads/merge_vardict_tnscope","pushedAt":"2024-08-28T11:24:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mathiasbio","name":"Mathias Johansson","path":"/mathiasbio","primaryAvatarUrl":"https://github.com/avatars/u/14308912?s=80&v=4"},"commit":{"message":"fix","shortMessageHtmlLink":"fix"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEs29TqgA","startCursor":null,"endCursor":null}},"title":"Activity ยท Clinical-Genomics/BALSAMIC"}