{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":669145103,"defaultBranch":"main","name":"ionBench","ownerLogin":"CardiacModelling","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-07-21T13:00:21.000Z","ownerAvatar":"https://github.com/avatars/u/44775763?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1715174624.0","currentOid":""},"activityList":{"items":[{"before":"4bd19568d155751384b84ab193042174a5878c90","after":"1978b7c762d6fc37e97d8f4d7ad00e700cd0a5bb","ref":"refs/heads/main","pushedAt":"2024-09-03T15:50:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://github.com/avatars/u/57675972?s=80&v=4"},"commit":{"message":"removed lfs\n\noptimisation files are too large and there are too many - I'll store them somewhere else","shortMessageHtmlLink":"removed lfs"}},{"before":"d931de9449192df6bc0ff9fe1f4fa6738afe8edb","after":"4bd19568d155751384b84ab193042174a5878c90","ref":"refs/heads/main","pushedAt":"2024-09-03T14:57:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://github.com/avatars/u/57675972?s=80&v=4"},"commit":{"message":"removed error catching for steady state issues\n\npreviously, we report errors for these issues. Occasionally, there are differences between ionbench and myokit in steady states (ionbench is forced to use a fairly poor linear solver). we now just give a warning and use myokit when this happens","shortMessageHtmlLink":"removed error catching for steady state issues"}},{"before":"5cccbce757431b822760d3fd43a79740bd573ae5","after":"d931de9449192df6bc0ff9fe1f4fa6738afe8edb","ref":"refs/heads/main","pushedAt":"2024-09-02T17:13:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://github.com/avatars/u/57675972?s=80&v=4"},"commit":{"message":"moved profile likelihood to lfs zipped folder","shortMessageHtmlLink":"moved profile likelihood to lfs zipped folder"}},{"before":"c5fc9454560992ee6109e32728e9e784a19a1245","after":"5cccbce757431b822760d3fd43a79740bd573ae5","ref":"refs/heads/main","pushedAt":"2024-09-02T16:42:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://github.com/avatars/u/57675972?s=80&v=4"},"commit":{"message":"pickle files to be stored with git lfs","shortMessageHtmlLink":"pickle files to be stored with git lfs"}},{"before":"eb87d1c401189a81a28c1d22299db6ca6f727ebe","after":"c5fc9454560992ee6109e32728e9e784a19a1245","ref":"refs/heads/main","pushedAt":"2024-08-30T16:25:02.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://github.com/avatars/u/57675972?s=80&v=4"},"commit":{"message":"added scripts to run final significance checks\n\nlongRuns1 runs the TRR Wilhelms2012b approach for 1000 parameters\nlongRuns2 runs specified approaches and repeatedly performs the significance bootstrapping calculations and aborts once significant","shortMessageHtmlLink":"added scripts to run final significance checks"}},{"before":"cec77edf14aaf6c640e9e877c85e19023bf67ec4","after":"eb87d1c401189a81a28c1d22299db6ca6f727ebe","ref":"refs/heads/main","pushedAt":"2024-08-28T15:06:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://github.com/avatars/u/57675972?s=80&v=4"},"commit":{"message":"adjusted ylim on failed plot","shortMessageHtmlLink":"adjusted ylim on failed plot"}},{"before":"72f38ba7e60ba392bbf5cfdc24e0132d1678bf8f","after":"cec77edf14aaf6c640e9e877c85e19023bf67ec4","ref":"refs/heads/main","pushedAt":"2024-08-28T14:55:40.000Z","pushType":"push","commitsCount":6,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://github.com/avatars/u/57675972?s=80&v=4"},"commit":{"message":"moved sorting to a log scale for failed plot","shortMessageHtmlLink":"moved sorting to a log scale for failed plot"}},{"before":"9ef75650e719abb365657eb217879240a9bca7f0","after":"72f38ba7e60ba392bbf5cfdc24e0132d1678bf8f","ref":"refs/heads/main","pushedAt":"2024-08-23T17:27:00.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://github.com/avatars/u/57675972?s=80&v=4"},"commit":{"message":"improved sorting in failed results plot\n\nrather than sorting based on the individual sortings, it considered how important a particular sorting is by looking at the difference in cost/time","shortMessageHtmlLink":"improved sorting in failed results plot"}},{"before":"cdd5089259c812184f7e668f7280af069a6900e0","after":"9ef75650e719abb365657eb217879240a9bca7f0","ref":"refs/heads/main","pushedAt":"2024-08-21T09:50:18.000Z","pushType":"push","commitsCount":9,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://github.com/avatars/u/57675972?s=80&v=4"},"commit":{"message":"improved error catching in dokos","shortMessageHtmlLink":"improved error catching in dokos"}},{"before":"3fdd6c43bf4087f483fe79aa5a99b4f1ef982bf0","after":"cdd5089259c812184f7e668f7280af069a6900e0","ref":"refs/heads/main","pushedAt":"2024-08-19T12:47:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://github.com/avatars/u/57675972?s=80&v=4"},"commit":{"message":"updated rate bounds figure\n\nmoved upper bound from 1e5 to 1e4 to avoid confusion with 1e5 in penalty function","shortMessageHtmlLink":"updated rate bounds figure"}},{"before":"24aa2aec513330de6d41017c35ab50cdaa3c4b9c","after":"3fdd6c43bf4087f483fe79aa5a99b4f1ef982bf0","ref":"refs/heads/main","pushedAt":"2024-08-08T16:06:39.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://github.com/avatars/u/57675972?s=80&v=4"},"commit":{"message":"profile likelihood debug curves updated","shortMessageHtmlLink":"profile likelihood debug curves updated"}},{"before":"3574abe48b03e3f4a8051e82c3c67a98423577ac","after":"24aa2aec513330de6d41017c35ab50cdaa3c4b9c","ref":"refs/heads/main","pushedAt":"2024-08-02T15:27:13.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://github.com/avatars/u/57675972?s=80&v=4"},"commit":{"message":"removed spline from success rate samples\n\nspline had issues since it didnt remain inside (0,1)\nnow we use a linear interpolation of a digitized curve from the original work","shortMessageHtmlLink":"removed spline from success rate samples"}},{"before":"841c24e2b93dea1caf280022353ae15833698e68","after":"3574abe48b03e3f4a8051e82c3c67a98423577ac","ref":"refs/heads/main","pushedAt":"2024-07-23T11:37:18.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://github.com/avatars/u/57675972?s=80&v=4"},"commit":{"message":"tidy resultsFigures.py","shortMessageHtmlLink":"tidy resultsFigures.py"}},{"before":"a95ea9d2ed9c645d179a0967d2626c67d8f13b94","after":"841c24e2b93dea1caf280022353ae15833698e68","ref":"refs/heads/main","pushedAt":"2024-07-18T11:18:05.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://github.com/avatars/u/57675972?s=80&v=4"},"commit":{"message":"added further description on steady state to util readme","shortMessageHtmlLink":"added further description on steady state to util readme"}},{"before":"f56a8bd052b06d84863f876ea93567f5f0294b2c","after":"a95ea9d2ed9c645d179a0967d2626c67d8f13b94","ref":"refs/heads/main","pushedAt":"2024-07-16T13:39:12.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://github.com/avatars/u/57675972?s=80&v=4"},"commit":{"message":"added debug profile likelihood plots","shortMessageHtmlLink":"added debug profile likelihood plots"}},{"before":"09ed9f3c04cf27e0567f90364a0118953fb1f6df","after":"f56a8bd052b06d84863f876ea93567f5f0294b2c","ref":"refs/heads/main","pushedAt":"2024-07-16T10:49:16.000Z","pushType":"push","commitsCount":8,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://github.com/avatars/u/57675972?s=80&v=4"},"commit":{"message":"added scripts readme","shortMessageHtmlLink":"added scripts readme"}},{"before":"c2b582488aecae0f2e51ad15b61ba9a0461764ae","after":"09ed9f3c04cf27e0567f90364a0118953fb1f6df","ref":"refs/heads/main","pushedAt":"2024-07-12T09:59:18.000Z","pushType":"push","commitsCount":6,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://github.com/avatars/u/57675972?s=80&v=4"},"commit":{"message":"added uncertainty readme","shortMessageHtmlLink":"added uncertainty readme"}},{"before":"b4d4fcb5a55ba125f65caea72a59e9e34841a8d9","after":"c2b582488aecae0f2e51ad15b61ba9a0461764ae","ref":"refs/heads/main","pushedAt":"2024-07-11T10:52:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://github.com/avatars/u/57675972?s=80&v=4"},"commit":{"message":"changed name of Davies2011 to 2012","shortMessageHtmlLink":"changed name of Davies2011 to 2012"}},{"before":"3e7fb31191710332617b2f03ecb66a6092fef0b5","after":"b4d4fcb5a55ba125f65caea72a59e9e34841a8d9","ref":"refs/heads/main","pushedAt":"2024-07-10T10:04:25.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://github.com/avatars/u/57675972?s=80&v=4"},"commit":{"message":"fixes for profile likelihood with other optimisers\n\ncmaes requires some more settings in the profile manager from the benchmarker to work","shortMessageHtmlLink":"fixes for profile likelihood with other optimisers"}},{"before":"8399162033a576736eac6bd7d1c11b41d5b2b1e9","after":"3e7fb31191710332617b2f03ecb66a6092fef0b5","ref":"refs/heads/main","pushedAt":"2024-07-09T14:39:52.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://github.com/avatars/u/57675972?s=80&v=4"},"commit":{"message":"improved readability of some profile likelihoods\n\nsome plots have the y axis limits rounded to powers of 10","shortMessageHtmlLink":"improved readability of some profile likelihoods"}},{"before":"3e1f1dbffadc981d8b28b43d1377f62c7b90d5d1","after":"8399162033a576736eac6bd7d1c11b41d5b2b1e9","ref":"refs/heads/main","pushedAt":"2024-07-08T09:03:32.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://github.com/avatars/u/57675972?s=80&v=4"},"commit":{"message":"created optimiser readme","shortMessageHtmlLink":"created optimiser readme"}},{"before":"adc1a945aa83b34a7b617bdb72352abc825ecb2c","after":"3e1f1dbffadc981d8b28b43d1377f62c7b90d5d1","ref":"refs/heads/main","pushedAt":"2024-07-05T16:53:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://github.com/avatars/u/57675972?s=80&v=4"},"commit":{"message":"created modifications readme","shortMessageHtmlLink":"created modifications readme"}},{"before":"402dbdf582e2f2ad62d50d14e74843f3edff912a","after":"adc1a945aa83b34a7b617bdb72352abc825ecb2c","ref":"refs/heads/main","pushedAt":"2024-07-05T14:48:18.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://github.com/avatars/u/57675972?s=80&v=4"},"commit":{"message":"added readme for data directory","shortMessageHtmlLink":"added readme for data directory"}},{"before":"46f5fccd148ad72dc7d6b5e658af52466aa50014","after":"402dbdf582e2f2ad62d50d14e74843f3edff912a","ref":"refs/heads/main","pushedAt":"2024-07-05T08:49:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://github.com/avatars/u/57675972?s=80&v=4"},"commit":{"message":"changed profile likelihood optimiser\n\nchanged from lm (used to work well on some problems) to trr (seems to be the best)\nalso made it optional input, cmaes might be a good choice for its high success rate","shortMessageHtmlLink":"changed profile likelihood optimiser"}},{"before":"a21c5978850583d6457886020c0eaa3bbc1fdddf","after":"46f5fccd148ad72dc7d6b5e658af52466aa50014","ref":"refs/heads/main","pushedAt":"2024-07-05T08:37:08.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://github.com/avatars/u/57675972?s=80&v=4"},"commit":{"message":"print average cost and grad times in review","shortMessageHtmlLink":"print average cost and grad times in review"}},{"before":"4ee237518d82669a87b2d54993b81d4bb470e6ff","after":"a21c5978850583d6457886020c0eaa3bbc1fdddf","ref":"refs/heads/main","pushedAt":"2024-06-14T11:04:18.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://github.com/avatars/u/57675972?s=80&v=4"},"commit":{"message":"removed some exceptions from coverage","shortMessageHtmlLink":"removed some exceptions from coverage"}},{"before":"cf80ccf6156d9d1292632dc9169685cb479bf287","after":"4ee237518d82669a87b2d54993b81d4bb470e6ff","ref":"refs/heads/main","pushedAt":"2024-06-13T16:27:27.000Z","pushType":"push","commitsCount":20,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://github.com/avatars/u/57675972?s=80&v=4"},"commit":{"message":"bug fixing and improved tests for profile likelihood","shortMessageHtmlLink":"bug fixing and improved tests for profile likelihood"}},{"before":"25e2f9ee24b4bae5d6a9546c0482e807627d9f5f","after":"cf80ccf6156d9d1292632dc9169685cb479bf287","ref":"refs/heads/main","pushedAt":"2024-06-05T09:11:01.000Z","pushType":"push","commitsCount":7,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://github.com/avatars/u/57675972?s=80&v=4"},"commit":{"message":"removed \"run optimiser as script\" feature\n\ninterferes with test coverage","shortMessageHtmlLink":"removed \"run optimiser as script\" feature"}},{"before":"e9479abae82a5b6891037da831dd415a82bab0b8","after":"25e2f9ee24b4bae5d6a9546c0482e807627d9f5f","ref":"refs/heads/main","pushedAt":"2024-05-17T06:46:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://github.com/avatars/u/57675972?s=80&v=4"},"commit":{"message":"added missing ionbench import to utils/cache","shortMessageHtmlLink":"added missing ionbench import to utils/cache"}},{"before":"6fbd4c7ff53828994ef55ef6dd405eade145d0a1","after":"e9479abae82a5b6891037da831dd415a82bab0b8","ref":"refs/heads/main","pushedAt":"2024-05-17T06:25:03.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"mjowen","name":"Matt J Owen","path":"/mjowen","primaryAvatarUrl":"https://github.com/avatars/u/57675972?s=80&v=4"},"commit":{"message":"caching can now be disabled globally","shortMessageHtmlLink":"caching can now be disabled globally"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEq8TZOAA","startCursor":null,"endCursor":null}},"title":"Activity ยท CardiacModelling/ionBench"}